Non-Coding RNA Search

Ss1.1-Pig4-TMW8042N17.3

Sequence:


               
               CCACACTAGATAGAAAGTAGATGTTGCCTGTTGCTGTGCTTATAAATGAAAAAGCCTGGC
TGGAACTCTTGCAAACGCCAGAATGTAAGATAATAATTCACTATGCTCCTTGAGCCTTTA
AGATATAGGTTGACAGGATTTATTTCTTAAAATGAGCTTCATTTCATATTTATTATCTTC
ATTTATATCTCTGAGAATTAACTATATAAAAAAGCTTCTGTCTGCTTGTATTTATCTTCC
AAACCCAGTCTAATAGGATATTTTGACTTTTAAAAGAAGTGGAGAAAAGACCAGAATTTT
ATAGGAGAAAATTGGAAGAAAAAACGGGCACAAAACCTCAGAAGGCAGCTGTTCCCAGCG
GCTTTCTATTGAACAACCTCTATGCTGCCTCTTGTATCTGTGTCTGTATTCTACTTCTGT
GTTTAGTCTTCAGATTGTAAGCCTTTCTGGCAAGCTTGTTTTTGTTTTTTTTTTTTAAAG
CTCTTTTCCTGAAACTTTTTATGAAAGGCTATGGCACCATTAATGCTGCTGAGTATCTTT
AAACTCATTACAAAGACAAGTGCATAGCTTAAGGCCACTATTGGTAAGGAAGCCAGGTGT
CCTCTGTGCCTTTTTTCTTTCCTTGAAGTAATTTAAGAACACCCCAAAAATGAGACTAAA
AAATTATCATCTTGGTACAACATGGTATTTATATATGCACTTGGACACTTAAAGAGGTGT
TGTGTTATCCAGAATGCAGAAGCAGCTCTAAACTTATTAGAGCAAACTTTCTGATATATC
AAGTTTTGTGTGTTGGCTTTGCTAGGGTATGATAGGAAAATGAAGACTCTTTAATCAGCT
CTAGTATTGCTTTTTAAGAGGGTAATACTAAACTTGGAAAATTATTTAAGTAGGTTTTAT
CAAGCAATCTGGGTTGTTGTTTTTTTTAATATAGTTTTTAATAGATATTTGAAAAGTGAA
AGAAACTTCAGAGGTTTTTTAATGGTGCAGGTGAAGGTGCCGGTTGCTATTTGGTATCAC
ACCCTACAAAAGCTTCATTACTTTATTTGATGCTGGTTGCTAAGCAGCCATTGCACAGAG
CATAAGTCTACTGGGTGCCTTTACAAGCCAGAGGCTTGATGCTGCACTGTTGATGTCACG
TAAGAAAATAATGCACATGCTCTAACTGCTAAACAGGAAAAGAAACCTAGAAACAAAGAA
AATGAAGAACAAAATGACAAAAAAGTTTGATTGAAATAAAATTTGATCAACATAACTGTA
TTTGGAAACATTCCAGGAAGGTTACTTCTGATCAAACTTGCCTGGGGGTGTTTGTTCAAA
CTTGTATTTAATAAATGAACATCTGACTTACAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACACTAGATAGAAAGTAGATGTTGCCTGTTGCTGTGCTTATAAATGAAAAAGCCTGGC
TGGAACTCTTGCAAACGCCAGAATGTAAGATAATAATTCACTATGCTCCTTGAGCCTTTA
AGATATAGGTTGACAGGATTTATTTCTTAAAATGAGCTTCATTTCATATTTATTATCTTC
ATTTATATCTCTGAGAATTAACTATATAAAAAAGCTTCTGTCTGCTTGTATTTATCTTCC
AAACCCAGTCTAATAGGATATTTTGACTTTTAAAAGAAGTGGAGAAAAGACCAGAATTTT
ATAGGAGAAAATTGGAAGAAAAAACGGGCACAAAACCTCAGAAGGCAGCTGTTCCCAGCG
GCTTTCTATTGAACAACCTCTATGCTGCCTCTTGTATCTGTGTCTGTATTCTACTTCTGT
GTTTAGTCTTCAGATTGTAAGCCTTTCTGGCAAGCTTGTTTTTGTTTTTTTTTTTTAAAG
CTCTTTTCCTGAAACTTTTTATGAAAGGCTATGGCACCATTAATGCTGCTGAGTATCTTT
AAACTCATTACAAAGACAAGTGCATAGCTTAAGGCCACTATTGGTAAGGAAGCCAGGTGT
CCTCTGTGCCTTTTTTCTTTCCTTGAAGTAATTTAAGAACACCCCAAAAATGAGACTAAA
AAATTATCATCTTGGTACAACATGGTATTTATATATGCACTTGGACACTTAAAGAGGTGT
TGTGTTATCCAGAATGCAGAAGCAGCTCTAAACTTATTAGAGCAAACTTTCTGATATATC
AAGTTTTGTGTGTTGGCTTTGCTAGGGTATGATAGGAAAATGAAGACTCTTTAATCAGCT
CTAGTATTGCTTTTTAAGAGGGTAATACTAAACTTGGAAAATTATTTAAGTAGGTTTTAT
CAAGCAATCTGGGTTGTTGTTTTTTTTAATATAGTTTTTAATAGATATTTGAAAAGTGAA
AGAAACTTCAGAGGTTTTTTAATGGTGCAGGTGAAGGTGCCGGTTGCTATTTGGTATCAC
ACCCTACAAAAGCTTCATTACTTTATTTGATGCTGGTTGCTAAGCAGCCATTGCACAGAG
CATAAGTCTACTGGGTGCCTTTACAAGCCAGAGGCTTGATGCTGCACTGTTGATGTCACG
TAAGAAAATAATGCACATGCTCTAACTGCTAAACAGGAAAAGAAACCTAGAAACAAAGAA
AATGAAGAACAAAATGACAAAAAAGTTTGATTGAAATAAAATTTGATCAACATAACTGTA
TTTGGAAACATTCCAGGAAGGTTACTTCTGATCAAACTTGCCTGGGGGTGTTTGTTCAAA
CTTGTATTTAATAAATGAACATCTGACTTACAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               740-851, + strand, RNAz p=0.601158
               

               
               1045-1164, - strand, RNAz p=0.684769
               

               
               1205-1308, - strand, RNAz p=0.614426

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               740-851, + strand, RNAz p=0.601158
               

               
               1045-1164, - strand, RNAz p=0.684769
               

               
               1205-1308, - strand, RNAz p=0.614426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               800-906, + strand, RNAmicro p=0.939231

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               800-906, + strand, RNAmicro p=0.939231

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004788, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004788, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1353, gnl|bosTau2|chr15 (15129914-15128580)
               

               
               1-1353, gnl|Hg17|chr11 (117773812-117775136)
               

               
               1-1353, gnl|Mm7|chr9 (44858721-44857472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1353, gnl|bosTau2|chr15 (15129914-15128580)
               

               
               1-1353, gnl|Hg17|chr11 (117773812-117775136)
               

               
               1-1353, gnl|Mm7|chr9 (44858721-44857472)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               sug (0.381874)
               

               
               clu (0.358938)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.381874)
               

               
               clu (0.358938)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	740-851, + strand, RNAz p=0.601158
	1045-1164, - strand, RNAz p=0.684769
	1205-1308, - strand, RNAz p=0.614426

	1-1353, gnl\|bosTau2\|chr15 (15129914-15128580)
	1-1353, gnl\|Hg17\|chr11 (117773812-117775136)
	1-1353, gnl\|Mm7\|chr9 (44858721-44857472)

	sug (0.381874)
	clu (0.358938)
	sin (0.349895)
	spc (0.340097)
	fco (0.314416)
	tbr (0.308356)
	kid (0.259471)
	aor (0.195274)
	ldo (0.194005)
	cmu (0.186393)
	rec (0.17307)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ste (0.135208)
	lyg (0.133103)
	cov (0.132153)
	ova (0.129132)
	tra (0.123092)
	cbl (0.114797)