Non-Coding RNA Search

Ss1.1-Pig4-TMW8042N18.5

Sequence:


               
               TGCTATGCACCCAACTCGGTATATTTTGGCTGGAGGTAATTCCAGTGGGAGGATACATGT
TTTTATGAATTAAGTAAGTTGCAGAGTTACTTAATTGGTTTGGCAACAGCAATTTGTACA
AATTAATCATTGTCTAAGGAGCCCACTAATTCATATGGCTAAGCCTGTTTACTTGGTAAT
ATGTTCTGTTTAGCAACTATAAAATTGCTTAGTTAATAAGAACCATGAGCAGAATGTACT
TTTAGTAAGGGAGAAGCCTTATATGCTGCTTCTACAGGGTGGGGAGGGAATTTGAGGGGA
GTCTGTGATGCTTCAGCACTTTTAAATCAAGCAGAATGTTGAGAAATTCTAACATTATTA
ATGATAAAGCTTTGAGTGATCAGTATTAAAAGTTTTTGTGGTTTTGATTATGTAGTGATA
TATATAGATTTGTCGTTTATTTTATAGTTTGGAGTGAATATTTATTTAGACTCATACACT
GGAAGGGGTCCTGAAAGGTCATCTAACTTGGTGATTTTGAAACTTAATTTTTTAAACTGA
GAACCTTTTTTCCCTCCGCCTTGAAATTTAATCTTACACGAAATCCCAGGATAATTGCTG
AGAAGCTTTGGTTTACTTGGGCAGGGCCTGTGTCTATGTGCATTGACCCTTTCCCTTCTC
TGTCATCTACGTGGCTCTTGAGACACAGCCAAGGAGTCCCAGGGCCTGAAGGTGCGGGGT
TTGGATCTACCCGATCCCTGTAATCCAGTGCCAGATTACCTTCAGACCAGTGTTTCCCCA
ATTGTGGGTTGTAGTTATCCATCCACATGAAATCAATTAACCGGCCATGAGCAGGGTTTA
AAAAAATGAAAAGGAGAGAAATAGTATAGAAAACATAATTAGAATAAGTATTCTTTTGTG
AAACTTAGTTCCATATGCATACATATTTGTAGGTATACATGCGTATGTATATTCTGATGT
AAAATGTGTTTATTACTGTGTACTTCGGGTCGCAGTTAAAGAAGTGAAAGCTTCCTCCCT
TAGAAGGTTGCAGAGAGCCTTATCCATCTCTGTCTTTAAACTCTCCAGAGGAGATTGTGT
AGCCTGGGGAAGTGTTGTGAAATATCATTTTTGTCATTTCTTCATAAAATTTTTTTTTCA
GAAGCTATGGCAATTTGAATGTGTCTGTTGCTGGAAGGGAAGCTACTAAATCGGTGACTA
CTATCACCCTGTGACATTACCTATCCAACTTTATTTCATTGTTCTTCATTGTCAAAGTAC
TACTGAAAGGGTATTGTAAATAGCTGCAGCAATATGTTTGATTTCTAAGAGGAACTATTA
TCTTTTCATAATTATATATCATAGAAATAAAGTGATGTGTATCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTATGCACCCAACTCGGTATATTTTGGCTGGAGGTAATTCCAGTGGGAGGATACATGT
TTTTATGAATTAAGTAAGTTGCAGAGTTACTTAATTGGTTTGGCAACAGCAATTTGTACA
AATTAATCATTGTCTAAGGAGCCCACTAATTCATATGGCTAAGCCTGTTTACTTGGTAAT
ATGTTCTGTTTAGCAACTATAAAATTGCTTAGTTAATAAGAACCATGAGCAGAATGTACT
TTTAGTAAGGGAGAAGCCTTATATGCTGCTTCTACAGGGTGGGGAGGGAATTTGAGGGGA
GTCTGTGATGCTTCAGCACTTTTAAATCAAGCAGAATGTTGAGAAATTCTAACATTATTA
ATGATAAAGCTTTGAGTGATCAGTATTAAAAGTTTTTGTGGTTTTGATTATGTAGTGATA
TATATAGATTTGTCGTTTATTTTATAGTTTGGAGTGAATATTTATTTAGACTCATACACT
GGAAGGGGTCCTGAAAGGTCATCTAACTTGGTGATTTTGAAACTTAATTTTTTAAACTGA
GAACCTTTTTTCCCTCCGCCTTGAAATTTAATCTTACACGAAATCCCAGGATAATTGCTG
AGAAGCTTTGGTTTACTTGGGCAGGGCCTGTGTCTATGTGCATTGACCCTTTCCCTTCTC
TGTCATCTACGTGGCTCTTGAGACACAGCCAAGGAGTCCCAGGGCCTGAAGGTGCGGGGT
TTGGATCTACCCGATCCCTGTAATCCAGTGCCAGATTACCTTCAGACCAGTGTTTCCCCA
ATTGTGGGTTGTAGTTATCCATCCACATGAAATCAATTAACCGGCCATGAGCAGGGTTTA
AAAAAATGAAAAGGAGAGAAATAGTATAGAAAACATAATTAGAATAAGTATTCTTTTGTG
AAACTTAGTTCCATATGCATACATATTTGTAGGTATACATGCGTATGTATATTCTGATGT
AAAATGTGTTTATTACTGTGTACTTCGGGTCGCAGTTAAAGAAGTGAAAGCTTCCTCCCT
TAGAAGGTTGCAGAGAGCCTTATCCATCTCTGTCTTTAAACTCTCCAGAGGAGATTGTGT
AGCCTGGGGAAGTGTTGTGAAATATCATTTTTGTCATTTCTTCATAAAATTTTTTTTTCA
GAAGCTATGGCAATTTGAATGTGTCTGTTGCTGGAAGGGAAGCTACTAAATCGGTGACTA
CTATCACCCTGTGACATTACCTATCCAACTTTATTTCATTGTTCTTCATTGTCAAAGTAC
TACTGAAAGGGTATTGTAAATAGCTGCAGCAATATGTTTGATTTCTAAGAGGAACTATTA
TCTTTTCATAATTATATATCATAGAAATAAAGTGATGTGTATCATTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               676-794, - strand, RNAz p=0.9538
               

               
               834-974, - strand, RNAz p=0.885572

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               676-794, - strand, RNAz p=0.9538
               

               
               834-974, - strand, RNAz p=0.885572

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1368, gnl|bosTau2|chr21 (34595384-34596730)
               

               
               1-1368, gnl|Hg17|chr15 (41945798-41947489)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1368, gnl|bosTau2|chr21 (34595384-34596730)
               

               
               1-1368, gnl|Hg17|chr15 (41945798-41947489)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               elu (0.385356)
               

               
               eye (0.341006)
               

               
               clu (0.239292)
               

               
               cmu (0.186393)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eye (0.341006)
               

               
               clu (0.239292)
               

               
               cmu (0.186393)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               med (0.116252)

	676-794, - strand, RNAz p=0.9538
	834-974, - strand, RNAz p=0.885572

	1-1368, gnl\|bosTau2\|chr21 (34595384-34596730)
	1-1368, gnl\|Hg17\|chr15 (41945798-41947489)

	elu (0.385356)
	eye (0.341006)
	clu (0.239292)
	cmu (0.186393)
	ute (0.132784)
	thg (0.126791)
	med (0.116252)