Ss1.1-Pig4-TMW8042O02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGCAAGCTCCGCTGAGGAGCCGGAGGTTGGGCCGCAGTTACAGCCGCGTCCGCTCCCG GTTCCTGGTCCCTCCGCGGCATGGCGTGCGGGGCGACGTTGAAGCGGCCCATGGAGTTCG AAGCGGCGCTGCTGAGCCCCGGCTCCCCGAAGCGTCGGCGCTGCGCCCCTCTCCCCGGCC CCACTCCGGGCCTCAGGCCCCCGGACGCCGAACCACCGCCGCCGCTGCTTCAGACCCAGA CCCCGCTGCCGACTCTGCAGCAGCCCGCCCCTCCCGGCAGCGAGCGGCGCCTTCCAACCC CGGAGCAAATTTTTCAGAACATAAAACAAGAATATAGTCGTTATCAAAGGTGGAGACATT TAGAAGTTGTTCTTAATCAGAGTGAAGCTTGTACTTCGGAAAGTCAGCCTCACTCCTCAG CACTTACAGCACCTAGTTCTCCAGGTTCCTCCTGGATGAAGAAGGACCAGCCCACCTTTA CCCTCCGACAGGTTGGGATAATATGTGAGCGTCTCTTAAAAGACTATGAAGATAAAATTC GGGAGGAGTATGAGCAAATCCTCAATACCAAACTAGCAGAACAATATGAATCTTTTGTGA AATTCACACATGATCAGATTATGCGACGATATGGGACAAGGCCTACAAGCTATGTGTCCT GAAGCTTTCTTGCATATCTGGGTACCAGGTTTGACCTCAAGAGATGGCTGCTGTACACTT TTTGCAACTGGTTTGATATCACATTTCAGCTCCAACTTTGCATCCTGAGAACACTTAAAC GTTTCTGCAGGTCCATTTTATACAACTTGAAAGACCTTAAAACTTTCTGGTTGCCACAAG CATATCTTTCTTTTCTGCTCATCCAATAAACAGCTGTGCCCTACTGTGATAGATTTTCCA AACAAAAATACCTGGAGCAGCAGTTTAGCAAAATATGCCCTCAGTGGCACTCAACAAATG GAGTTTCCCCAAGCACAGTTCTGTAAGAAGTGTGTGTGAGAGTGTGTGTATATGTATGTA TGTGTATTTTAAGTTATTATTTGTATCGTGCAAATTTTTTTGATCTTGGGGATTCTGGCT GTGAATTTGATGCACGACAATTATGGTTAAAAACATTTGCTTGGTCTACAGAAGATCATT AATGTTTTGTGACCATATAAGTTGTAACAGTGGATTGTTTAATGTGTAGGTATTATTGTT AAATACAGGGACTGTTTCCAGGCACAGAACATGAATCATAAGTTAGGATGGACATTAGAT GTGATTATGATGACATAGCAAAGGTCTGTGGTCCTAGGTCTATAAATGCGTGGTAAGTTG TTAGAACAAACCAGAGATAGGCCATTTGATACATGACTCTGCCTAGCCGTGTTAGAAAAT TACTTTGACTCCAAGCCTTAAAATACCCACATGGAGTCTGTGCTCACCTCATTCACACAA GGAGCTCCCGGGATACTGAACCTCTAAGAAGAAAAAGTCTTCTGGAGCGGGAGCATCAGG GTTATGCTTGGGAGCATAATAGGTGAGCACGGGGCTGGGCCAGGCCCCAGAGACACTGCT ACTTGGGAGGAGCCACTTAACCTTTGTACCAGTTATTAAAAATAGAATTTGGATCCTTTG GTCAGGTTCCCCCAAATTCTTTTAAGAGGTGTCCATGTTCAACTGCTTGAGCTTTGTTTT GGCAACCCCCTGCCTGAAGTTGCTTACAGACTGTTCTTTACCTTGTTTCCAAGGTTGAGG AACAGAAAGTAGCCTCTGTTTTGAGGAGGTGGAAGTTAAGTATACATTTATTTTTTACTG TGACTTGTTCAGGACCACATTTTACAAAATGCCTTGTTTCCTTTATTATTGTTTCTGGAA AGAAAAGTTCTATTAAAATTGTTTTAGTTTGAATATAGAGTAGTTTTTTTAATTAGGGCT TATTTTGAAAAACTCTGAGTTTAATTCAAATGTATGCCAGTACCTTCCAAAGTAAGGTAA TATTCAGAGACAATTGTCCTGATCAGATGGCTTAGAGAAATTTCTGGAATATTCACATTC GAAGATTCCTTATTAATGAATGTCTTTGACTTAAATCTAACCAAAAACTGCAACATTATT CTTTGTACATTTTCATTATATAGTGTTAACAAGCTTAGTTGCAAACAAATAAAATACTTA AGCTATTTGTTTACCTTGCCTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGCAAGCTCCGCTGAGGAGCCGGAGGTTGGGCCGCAGTTACAGCCGCGTCCGCTCCCG GTTCCTGGTCCCTCCGCGGCATGGCGTGCGGGGCGACGTTGAAGCGGCCCATGGAGTTCG AAGCGGCGCTGCTGAGCCCCGGCTCCCCGAAGCGTCGGCGCTGCGCCCCTCTCCCCGGCC CCACTCCGGGCCTCAGGCCCCCGGACGCCGAACCACCGCCGCCGCTGCTTCAGACCCAGA CCCCGCTGCCGACTCTGCAGCAGCCCGCCCCTCCCGGCAGCGAGCGGCGCCTTCCAACCC CGGAGCAAATTTTTCAGAACATAAAACAAGAATATAGTCGTTATCAAAGGTGGAGACATT TAGAAGTTGTTCTTAATCAGAGTGAAGCTTGTACTTCGGAAAGTCAGCCTCACTCCTCAG CACTTACAGCACCTAGTTCTCCAGGTTCCTCCTGGATGAAGAAGGACCAGCCCACCTTTA CCCTCCGACAGGTTGGGATAATATGTGAGCGTCTCTTAAAAGACTATGAAGATAAAATTC GGGAGGAGTATGAGCAAATCCTCAATACCAAACTAGCAGAACAATATGAATCTTTTGTGA AATTCACACATGATCAGATTATGCGACGATATGGGACAAGGCCTACAAGCTATGTGTCCT GAAGCTTTCTTGCATATCTGGGTACCAGGTTTGACCTCAAGAGATGGCTGCTGTACACTT TTTGCAACTGGTTTGATATCACATTTCAGCTCCAACTTTGCATCCTGAGAACACTTAAAC GTTTCTGCAGGTCCATTTTATACAACTTGAAAGACCTTAAAACTTTCTGGTTGCCACAAG CATATCTTTCTTTTCTGCTCATCCAATAAACAGCTGTGCCCTACTGTGATAGATTTTCCA AACAAAAATACCTGGAGCAGCAGTTTAGCAAAATATGCCCTCAGTGGCACTCAACAAATG GAGTTTCCCCAAGCACAGTTCTGTAAGAAGTGTGTGTGAGAGTGTGTGTATATGTATGTA TGTGTATTTTAAGTTATTATTTGTATCGTGCAAATTTTTTTGATCTTGGGGATTCTGGCT GTGAATTTGATGCACGACAATTATGGTTAAAAACATTTGCTTGGTCTACAGAAGATCATT AATGTTTTGTGACCATATAAGTTGTAACAGTGGATTGTTTAATGTGTAGGTATTATTGTT AAATACAGGGACTGTTTCCAGGCACAGAACATGAATCATAAGTTAGGATGGACATTAGAT GTGATTATGATGACATAGCAAAGGTCTGTGGTCCTAGGTCTATAAATGCGTGGTAAGTTG TTAGAACAAACCAGAGATAGGCCATTTGATACATGACTCTGCCTAGCCGTGTTAGAAAAT TACTTTGACTCCAAGCCTTAAAATACCCACATGGAGTCTGTGCTCACCTCATTCACACAA GGAGCTCCCGGGATACTGAACCTCTAAGAAGAAAAAGTCTTCTGGAGCGGGAGCATCAGG GTTATGCTTGGGAGCATAATAGGTGAGCACGGGGCTGGGCCAGGCCCCAGAGACACTGCT ACTTGGGAGGAGCCACTTAACCTTTGTACCAGTTATTAAAAATAGAATTTGGATCCTTTG GTCAGGTTCCCCCAAATTCTTTTAAGAGGTGTCCATGTTCAACTGCTTGAGCTTTGTTTT GGCAACCCCCTGCCTGAAGTTGCTTACAGACTGTTCTTTACCTTGTTTCCAAGGTTGAGG AACAGAAAGTAGCCTCTGTTTTGAGGAGGTGGAAGTTAAGTATACATTTATTTTTTACTG TGACTTGTTCAGGACCACATTTTACAAAATGCCTTGTTTCCTTTATTATTGTTTCTGGAA AGAAAAGTTCTATTAAAATTGTTTTAGTTTGAATATAGAGTAGTTTTTTTAATTAGGGCT TATTTTGAAAAACTCTGAGTTTAATTCAAATGTATGCCAGTACCTTCCAAAGTAAGGTAA TATTCAGAGACAATTGTCCTGATCAGATGGCTTAGAGAAATTTCTGGAATATTCACATTC GAAGATTCCTTATTAATGAATGTCTTTGACTTAAATCTAACCAAAAACTGCAACATTATT CTTTGTACATTTTCATTATATAGTGTTAACAAGCTTAGTTGCAAACAAATAAAATACTTA AGCTATTTGTTTACCTTGCCTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 931-1049, - strand, RNAz p=0.93986 | |
| 1086-1203, - strand, RNAz p=0.938719 | |
| 1440-1543, - strand, RNAz p=0.514816 | |
| 1632-1830, + strand, RNAz p=0.990033 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 931-1049, - strand, RNAz p=0.93986 | |
| 1086-1203, - strand, RNAz p=0.938719 | |
| 1440-1543, - strand, RNAz p=0.514816 | |
| 1632-1830, + strand, RNAz p=0.990033 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 1-303, gnl|bosTau2|chr3 (73484534-73484833) | |
| 1-303, gnl|canFam2|chrX (60684093-60683850) | |
| 1-303, gnl|dasNov1|scaffold_135502 (1461-1209) | |
| 1-303, gnl|echTel1|scaffold_314147 (48443-48264) | |
| 1-303, gnl|Hg17|chr1 (39126069-39126365) | |
| 1-303, gnl|hg17|chr12 (79457617-79457854) | |
| 1-303, gnl|loxAfr1|scaffold_146702 (4151-3942) | |
| 1-303, gnl|mm7|chr17 (34327793-34327552) | |
| 1-303, gnl|Mm7|chr4 (123194891-123194594) | |
| 1-303, gnl|monDom2|scaffold_26 (7699406-7699667) | |
| 1-303, gnl|oryCun1|scaffold_3308 (4604-4847) | |
| 1-303, gnl|panTro1|chr10 (81079496-81079721) | |
| 1-303, gnl|rheMac2|chr11 (77497341-77497567) | |
| 1-303, gnl|rn3|chr5 (143058577-143058817) | |
| 441-579, gnl|bosTau2|chr3 (73491437-73491575) | |
| 441-579, gnl|canFam2|chr15 (6769388-6769219) | |
| 441-579, gnl|danRer3|chr16 (43908589-43908730) | |
| 441-579, gnl|dasNov1|scaffold_24918 (37660-37507) | |
| 441-579, gnl|echTel1|scaffold_312630 (75958-75806) | |
| 441-579, gnl|fr1|chrUn (175009923-175009779) | |
| 441-579, gnl|hg17|chr1 (39135713-39135875) | |
| 441-579, gnl|Hg17|chr1 (39135733-39135871) | |
| 441-579, gnl|loxAfr1|scaffold_55480 (12590-12725) | |
| 441-579, gnl|mm7|chr4 (123183933-123183787) | |
| 441-579, gnl|Mm7|chr4 (123183927-123183789) | |
| 441-579, gnl|monDom2|scaffold_43 (10200032-10199867) | |
| 441-579, gnl|oryCun1|scaffold_109773 (1452-1300) | |
| 441-579, gnl|panTro1|chr1 (39997953-39998115) | |
| 441-579, gnl|rheMac2|chr1 (41865938-41866100) | |
| 441-579, gnl|rn3|chr5 (143046838-143046685) | |
| 441-579, gnl|tetNig1|chr10 (6577845-6577722) | |
| 441-579, gnl|xenTro1|scaffold_442 (400291-400148) | |
| 652-2184, gnl|bosTau2|chr3 (73493621-73495169) | |
| 652-2184, gnl|Hg17|chr1 (39138810-39140667) | |
| 652-2184, gnl|Mm7|chr4 (123181510-123179992) | |
| 701-878, gnl|bosTau2|chr25 (28656919-28656748) | |
| 701-878, gnl|Hg17|chr7 (73492543-73491790) | |
| 701-878, gnl|Mm7|chr17 (34328172-34328386) | |
| 2022-2154, gnl|bosTau2|chr11 (13811644-13811513) | |
| 2022-2154, gnl|canFam2|chr6 (56709679-56709538) | |
| 2022-2154, gnl|dasNov1|scaffold_177 (229154-229279) | |
| 2022-2154, gnl|echTel1|scaffold_284335 (1037-1177) | |
| 2022-2154, gnl|hg17|chr1 (95948036-95948158) | |
| 2022-2154, gnl|Hg17|chr1 (95948191-95948058) | |
| 2022-2154, gnl|loxAfr1|scaffold_172227 (4682-4544) | |
| 2022-2154, gnl|mm7|chr3 (120387584-120387459) | |
| 2022-2154, gnl|Mm7|chr3 (120387424-120387563) | |
| 2022-2154, gnl|monDom2|scaffold_26 (7697427-7697556) | |
| 2022-2154, gnl|oryCun1|scaffold_3308 (2774-2878) | |
| 2022-2154, gnl|panTro1|chr1 (94961997-94962119) | |
| 2022-2154, gnl|rheMac2|chr1 (98807775-98807897) | |
| 2022-2154, gnl|rn3|chr2 (217147795-217147700) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-303, gnl|bosTau2|chr3 (73484534-73484833) | |
| 1-303, gnl|canFam2|chrX (60684093-60683850) | |
| 1-303, gnl|dasNov1|scaffold_135502 (1461-1209) | |
| 1-303, gnl|echTel1|scaffold_314147 (48443-48264) | |
| 1-303, gnl|Hg17|chr1 (39126069-39126365) | |
| 1-303, gnl|hg17|chr12 (79457617-79457854) | |
| 1-303, gnl|loxAfr1|scaffold_146702 (4151-3942) | |
| 1-303, gnl|mm7|chr17 (34327793-34327552) | |
| 1-303, gnl|Mm7|chr4 (123194891-123194594) | |
| 1-303, gnl|monDom2|scaffold_26 (7699406-7699667) | |
| 1-303, gnl|oryCun1|scaffold_3308 (4604-4847) | |
| 1-303, gnl|panTro1|chr10 (81079496-81079721) | |
| 1-303, gnl|rheMac2|chr11 (77497341-77497567) | |
| 1-303, gnl|rn3|chr5 (143058577-143058817) | |
| 441-579, gnl|bosTau2|chr3 (73491437-73491575) | |
| 441-579, gnl|canFam2|chr15 (6769388-6769219) | |
| 441-579, gnl|danRer3|chr16 (43908589-43908730) | |
| 441-579, gnl|dasNov1|scaffold_24918 (37660-37507) | |
| 441-579, gnl|echTel1|scaffold_312630 (75958-75806) | |
| 441-579, gnl|fr1|chrUn (175009923-175009779) | |
| 441-579, gnl|hg17|chr1 (39135713-39135875) | |
| 441-579, gnl|Hg17|chr1 (39135733-39135871) | |
| 441-579, gnl|loxAfr1|scaffold_55480 (12590-12725) | |
| 441-579, gnl|mm7|chr4 (123183933-123183787) | |
| 441-579, gnl|Mm7|chr4 (123183927-123183789) | |
| 441-579, gnl|monDom2|scaffold_43 (10200032-10199867) | |
| 441-579, gnl|oryCun1|scaffold_109773 (1452-1300) | |
| 441-579, gnl|panTro1|chr1 (39997953-39998115) | |
| 441-579, gnl|rheMac2|chr1 (41865938-41866100) | |
| 441-579, gnl|rn3|chr5 (143046838-143046685) | |
| 441-579, gnl|tetNig1|chr10 (6577845-6577722) | |
| 441-579, gnl|xenTro1|scaffold_442 (400291-400148) | |
| 652-2184, gnl|bosTau2|chr3 (73493621-73495169) | |
| 652-2184, gnl|Hg17|chr1 (39138810-39140667) | |
| 652-2184, gnl|Mm7|chr4 (123181510-123179992) | |
| 701-878, gnl|bosTau2|chr25 (28656919-28656748) | |
| 701-878, gnl|Hg17|chr7 (73492543-73491790) | |
| 701-878, gnl|Mm7|chr17 (34328172-34328386) | |
| 2022-2154, gnl|bosTau2|chr11 (13811644-13811513) | |
| 2022-2154, gnl|canFam2|chr6 (56709679-56709538) | |
| 2022-2154, gnl|dasNov1|scaffold_177 (229154-229279) | |
| 2022-2154, gnl|echTel1|scaffold_284335 (1037-1177) | |
| 2022-2154, gnl|hg17|chr1 (95948036-95948158) | |
| 2022-2154, gnl|Hg17|chr1 (95948191-95948058) | |
| 2022-2154, gnl|loxAfr1|scaffold_172227 (4682-4544) | |
| 2022-2154, gnl|mm7|chr3 (120387584-120387459) | |
| 2022-2154, gnl|Mm7|chr3 (120387424-120387563) | |
| 2022-2154, gnl|monDom2|scaffold_26 (7697427-7697556) | |
| 2022-2154, gnl|oryCun1|scaffold_3308 (2774-2878) | |
| 2022-2154, gnl|panTro1|chr1 (94961997-94962119) | |
| 2022-2154, gnl|rheMac2|chr1 (98807775-98807897) | |
| 2022-2154, gnl|rn3|chr2 (217147795-217147700) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| fbs (0.526039) | |
| cbe (0.478469) | |
| ski (0.440205) | |
| amn (0.417711) | |
| tes (0.415628) | |
| nca (0.410621) | |
| aor (0.390549) | |
| thg (0.380373) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| cbr (0.255951) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.526039) | |
| cbe (0.478469) | |
| ski (0.440205) | |
| amn (0.417711) | |
| tes (0.415628) | |
| nca (0.410621) | |
| aor (0.390549) | |
| thg (0.380373) | |
| cbl (0.344392) | |
| spc (0.340097) | |
| fco (0.314416) | |
| cte (0.29274) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| cbr (0.255951) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| col (0.195008) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jca (0.11396) | |
| ldo (0.0970026) |