Ss1.1-Pig4-TMW8042O14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGGGGCCGAGCCGTGGGAGGGAGCAGGGGGTACCGGGAAGAGGCTGACAGCCCGGCC AAGAGTCGGCCTGGGGAGGTCGGGAAGCGGCAGTGTAGGAGCGACCCCGAGGCCCGGGAA CGGAGGATCAGGGTGATCAAGGTGAAGCCATGTGGCAGCTGCTGCTCCCGCTGGCCCTGT GGCTGGGCACCATGGGCTTGGGCAGGGCTGAGCTCACAGCGGCCCAGCTCCGTGGCCTGC AGGTGGCCCTGGAGGAGTTCCACAAGCACCCACCCGTGCAGTGGGCCTTCCGGGAGACTG GTGTGAACAGTGCCATGGACACGCCCTTCCCGGCCGGGACCTTTGTGAGGCTGGAATTTA AGCTCCAGCAGACCAGCTGCCGGAAGAGGGACTGGAAGAAAGCTGAGTGCAAGGTCAAGC CCAACGGGAGAAAGCGGAAGTGCCTAGCCTGCATCAAGCTGAACTCTGAGGATAAAGTCC TGGGCCGGATGGTTCACTGCCCCATAGAGACTCAGGTCCAACGGGAGCCCGAGGAGCGCC AGGAAGCTCAGTGCAGCCGGGTGGAGCGGGCCGGCGAGGACCCCCACAGCTACTACTTCC CAGGACAATTTGCCTTCTTCAAAGCCTTGCCCCCCAGCTGAGGCCCTGCTGAACTTCACC CGGCTTCCTGGAAGCTGCGGGAGGACACCAGTGAAGGCCGCCTGGCCCTCCCCTCTCTGC GCCCAGGGAGGGCCACCCCCATTATCACTGAGCTAATAAAACTGCTCTGCTGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGGGGCCGAGCCGTGGGAGGGAGCAGGGGGTACCGGGAAGAGGCTGACAGCCCGGCC AAGAGTCGGCCTGGGGAGGTCGGGAAGCGGCAGTGTAGGAGCGACCCCGAGGCCCGGGAA CGGAGGATCAGGGTGATCAAGGTGAAGCCATGTGGCAGCTGCTGCTCCCGCTGGCCCTGT GGCTGGGCACCATGGGCTTGGGCAGGGCTGAGCTCACAGCGGCCCAGCTCCGTGGCCTGC AGGTGGCCCTGGAGGAGTTCCACAAGCACCCACCCGTGCAGTGGGCCTTCCGGGAGACTG GTGTGAACAGTGCCATGGACACGCCCTTCCCGGCCGGGACCTTTGTGAGGCTGGAATTTA AGCTCCAGCAGACCAGCTGCCGGAAGAGGGACTGGAAGAAAGCTGAGTGCAAGGTCAAGC CCAACGGGAGAAAGCGGAAGTGCCTAGCCTGCATCAAGCTGAACTCTGAGGATAAAGTCC TGGGCCGGATGGTTCACTGCCCCATAGAGACTCAGGTCCAACGGGAGCCCGAGGAGCGCC AGGAAGCTCAGTGCAGCCGGGTGGAGCGGGCCGGCGAGGACCCCCACAGCTACTACTTCC CAGGACAATTTGCCTTCTTCAAAGCCTTGCCCCCCAGCTGAGGCCCTGCTGAACTTCACC CGGCTTCCTGGAAGCTGCGGGAGGACACCAGTGAAGGCCGCCTGGCCCTCCCCTCTCTGC GCCCAGGGAGGGCCACCCCCATTATCACTGAGCTAATAAAACTGCTCTGCTGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 124-323, gnl|bosTau2|chr4 (65034894-65034695) | |
| 124-323, gnl|canFam2|chr16 (17622150-17622388) | |
| 124-323, gnl|canFam2|chr16 (17622416-17622152) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622421) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622315) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622466) | |
| 124-323, gnl|echTel1|scaffold_280908 (48601-48380) | |
| 124-323, gnl|echTel1|scaffold_280908 (48360-48599) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48360) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48436) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48322) | |
| 124-323, gnl|hg17|chr10 (135340109-135340364) | |
| 124-323, gnl|hg17|chr16 (34313760-34313988) | |
| 124-323, gnl|hg17|chr3 (75790292-75790547) | |
| 124-323, gnl|hg17|chr4 (191334538-191334834) | |
| 124-323, gnl|Hg17|chr7 (149475368-149475173) | |
| 124-323, gnl|hg17|chrX (21199899-21200061) | |
| 124-323, gnl|mm7|chr6 (48532149-48532381) | |
| 124-323, gnl|mm7|chr6 (48532403-48532091) | |
| 124-323, gnl|mm7|chr6 (48532091-48532403) | |
| 124-323, gnl|mm7|chr6 (48532143-48532309) | |
| 124-323, gnl|mm7|chr6 (48532091-48532412) | |
| 124-323, gnl|Mm7|chr6 (48532342-48532138) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5948-5707) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5679-5946) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5677) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5783) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5645) | |
| 124-323, gnl|panTro1|chr2 (77824185-77824442) | |
| 124-323, gnl|panTro1|chr2 (77824442-77824185) | |
| 124-323, gnl|panTro1|chr2 (77824442-77824141) | |
| 124-323, gnl|panTro1|chrUn_random (8543863-8543635) | |
| 124-323, gnl|panTro1|chrX (21960628-21960790) | |
| 124-323, gnl|rheMac2|chr20 (30329949-30329727) | |
| 124-323, gnl|rheMac2|chr5 (182082543-182082312) | |
| 124-323, gnl|rheMac2|chr5 (182082312-182082583) | |
| 124-323, gnl|rheMac2|chr9 (646985-646759) | |
| 124-323, gnl|rheMac2|chrX (19174317-19174479) | |
| 124-323, gnl|rn3|chr4 (76938066-76938298) | |
| 124-323, gnl|rn3|chr4 (76938320-76938008) | |
| 124-323, gnl|rn3|chr4 (76938008-76938320) | |
| 124-323, gnl|rn3|chr4 (76938065-76938226) | |
| 124-323, gnl|rn3|chr4 (76938008-76938329) | |
| 524-645, gnl|bosTau2|chr4 (65033054-65032931) | |
| 524-645, gnl|canFam2|chr16 (17620146-17620271) | |
| 524-645, gnl|canFam2|chr16 (17620145-17620278) | |
| 524-645, gnl|dasNov1|scaffold_49254 (13707-13833) | |
| 524-645, gnl|dasNov1|scaffold_49254 (13725-13839) | |
| 524-645, gnl|echTel1|scaffold_280908 (50625-50500) | |
| 524-645, gnl|echTel1|scaffold_280908 (50622-50495) | |
| 524-645, gnl|hg17|chr7 (149473353-149473478) | |
| 524-645, gnl|Hg17|chr7 (149473479-149473354) | |
| 524-645, gnl|hg17|chrX (21199582-21199717) | |
| 524-645, gnl|loxAfr1|scaffold_145474 (4102-3976) | |
| 524-645, gnl|loxAfr1|scaffold_145474 (4100-3971) | |
| 524-645, gnl|mm7|chr6 (48529992-48530109) | |
| 524-645, gnl|mm7|chr6 (48530015-48530116) | |
| 524-645, gnl|Mm7|chr6 (48530110-48529998) | |
| 524-645, gnl|monDom2|scaffold_7 (10365620-10365746) | |
| 524-645, gnl|oryCun1|scaffold_215377 (7569-7442) | |
| 524-645, gnl|oryCun1|scaffold_215377 (7557-7442) | |
| 524-645, gnl|panTro1|chr6_random (17464666-17464541) | |
| 524-645, gnl|panTro1|chrX (21960312-21960447) | |
| 524-645, gnl|rheMac2|chr20 (30330274-30330151) | |
| 524-645, gnl|rheMac2|chrX (19174000-19174135) | |
| 524-645, gnl|rn3|chr4 (76935885-76936002) | |
| 524-645, gnl|rn3|chr4 (76935887-76936009) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-323, gnl|bosTau2|chr4 (65034894-65034695) | |
| 124-323, gnl|canFam2|chr16 (17622150-17622388) | |
| 124-323, gnl|canFam2|chr16 (17622416-17622152) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622421) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622315) | |
| 124-323, gnl|canFam2|chr16 (17622152-17622466) | |
| 124-323, gnl|echTel1|scaffold_280908 (48601-48380) | |
| 124-323, gnl|echTel1|scaffold_280908 (48360-48599) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48360) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48436) | |
| 124-323, gnl|echTel1|scaffold_280908 (48599-48322) | |
| 124-323, gnl|hg17|chr10 (135340109-135340364) | |
| 124-323, gnl|hg17|chr16 (34313760-34313988) | |
| 124-323, gnl|hg17|chr3 (75790292-75790547) | |
| 124-323, gnl|hg17|chr4 (191334538-191334834) | |
| 124-323, gnl|Hg17|chr7 (149475368-149475173) | |
| 124-323, gnl|hg17|chrX (21199899-21200061) | |
| 124-323, gnl|mm7|chr6 (48532149-48532381) | |
| 124-323, gnl|mm7|chr6 (48532403-48532091) | |
| 124-323, gnl|mm7|chr6 (48532091-48532403) | |
| 124-323, gnl|mm7|chr6 (48532143-48532309) | |
| 124-323, gnl|mm7|chr6 (48532091-48532412) | |
| 124-323, gnl|Mm7|chr6 (48532342-48532138) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5948-5707) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5679-5946) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5677) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5783) | |
| 124-323, gnl|oryCun1|scaffold_215377 (5946-5645) | |
| 124-323, gnl|panTro1|chr2 (77824185-77824442) | |
| 124-323, gnl|panTro1|chr2 (77824442-77824185) | |
| 124-323, gnl|panTro1|chr2 (77824442-77824141) | |
| 124-323, gnl|panTro1|chrUn_random (8543863-8543635) | |
| 124-323, gnl|panTro1|chrX (21960628-21960790) | |
| 124-323, gnl|rheMac2|chr20 (30329949-30329727) | |
| 124-323, gnl|rheMac2|chr5 (182082543-182082312) | |
| 124-323, gnl|rheMac2|chr5 (182082312-182082583) | |
| 124-323, gnl|rheMac2|chr9 (646985-646759) | |
| 124-323, gnl|rheMac2|chrX (19174317-19174479) | |
| 124-323, gnl|rn3|chr4 (76938066-76938298) | |
| 124-323, gnl|rn3|chr4 (76938320-76938008) | |
| 124-323, gnl|rn3|chr4 (76938008-76938320) | |
| 124-323, gnl|rn3|chr4 (76938065-76938226) | |
| 124-323, gnl|rn3|chr4 (76938008-76938329) | |
| 524-645, gnl|bosTau2|chr4 (65033054-65032931) | |
| 524-645, gnl|canFam2|chr16 (17620146-17620271) | |
| 524-645, gnl|canFam2|chr16 (17620145-17620278) | |
| 524-645, gnl|dasNov1|scaffold_49254 (13707-13833) | |
| 524-645, gnl|dasNov1|scaffold_49254 (13725-13839) | |
| 524-645, gnl|echTel1|scaffold_280908 (50625-50500) | |
| 524-645, gnl|echTel1|scaffold_280908 (50622-50495) | |
| 524-645, gnl|hg17|chr7 (149473353-149473478) | |
| 524-645, gnl|Hg17|chr7 (149473479-149473354) | |
| 524-645, gnl|hg17|chrX (21199582-21199717) | |
| 524-645, gnl|loxAfr1|scaffold_145474 (4102-3976) | |
| 524-645, gnl|loxAfr1|scaffold_145474 (4100-3971) | |
| 524-645, gnl|mm7|chr6 (48529992-48530109) | |
| 524-645, gnl|mm7|chr6 (48530015-48530116) | |
| 524-645, gnl|Mm7|chr6 (48530110-48529998) | |
| 524-645, gnl|monDom2|scaffold_7 (10365620-10365746) | |
| 524-645, gnl|oryCun1|scaffold_215377 (7569-7442) | |
| 524-645, gnl|oryCun1|scaffold_215377 (7557-7442) | |
| 524-645, gnl|panTro1|chr6_random (17464666-17464541) | |
| 524-645, gnl|panTro1|chrX (21960312-21960447) | |
| 524-645, gnl|rheMac2|chr20 (30330274-30330151) | |
| 524-645, gnl|rheMac2|chrX (19174000-19174135) | |
| 524-645, gnl|rn3|chr4 (76935885-76936002) | |
| 524-645, gnl|rn3|chr4 (76935887-76936009) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| cli (1.22249) | |
| eje (0.889504) | |
| nje (0.8296) | |
| cov (0.660764) | |
| csp (0.644745) | |
| eli (0.607257) | |
| cag (0.604778) | |
| ute (0.531138) | |
| ill (0.526778) | |
| cki (0.495704) | |
| nco (0.485201) | |
| cly (0.482567) | |
| amn (0.417711) | |
| col (0.390016) | |
| eru (0.360144) | |
| med (0.348756) | |
| jej (0.296765) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.22249) | |
| eje (0.889504) | |
| nje (0.8296) | |
| cov (0.660764) | |
| csp (0.644745) | |
| eli (0.607257) | |
| cag (0.604778) | |
| ute (0.531138) | |
| ill (0.526778) | |
| cki (0.495704) | |
| nco (0.485201) | |
| cly (0.482567) | |
| amn (0.417711) | |
| col (0.390016) | |
| eru (0.360144) | |
| med (0.348756) | |
| jej (0.296765) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fty (0.17584) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| nbm (0.0993246) |