Ss1.1-Pig4-TMW8042O19.5
|
CGCGTCTGCGGGAGCTGATCCTGGACACCGGTTGTTGGCTGGAATCTGTTCGGGTCTTTT
ATGGGGCAGGCGGCCGGCCTCAAGCCTGCCGGAGACGCATTATCTTACAAAATGGTAGAA
GACGAACTGGCACTATTTGATAAAAGCATAAATGAATTTTGGAATAGATTCAAAAGCACT
GTTAGTGACACCTCCTGTCAGATGGTGGGACTGAGAGAGAACTACAAGGACTCCCTTAAA
GCATTTGCAGAAAAGCTGTCTGTGAAATTAAAGGAAGAAGAACGAATGGTTGAAATGTTT
CTGGAATATCAAAATCAAATCGACAGGCAGAATAAGCTCATTCAAGAAAAGAAAGATAAT
TTGTTAAAGCTGATTGCTGAAGTAAAAGACAAAAGTCAGGAACTGGAAGCACTGACTGCC
AATATCCAGGACCTCAAGGAAGAATATGCTAGGAAGAAGGAAACTATTTCCACTGCTAAC
AGAGCTAATGAAGAGAGGTTGAAAAGGCTACAAAAATCTGCAGACTTGTATAAAGATCGA
CTTGGACTAGAAATTCGAAAAATTTATGGTGATAAGTTACAGTTTATATTCACTAATATT
GATCCTAAGCATCCTGAGATCCCGTTCATGTTTACCCTGAGCCTAAATTCCGAAAAATAC
ACACAGAACATCTGTATGACCCAGCAATCCCATTCTTGGGCATATATCCAGAAAATGTTC
TTTTCAAACAGTTAAATGCCCCCCTATGTTCATGCAGCACTATTCATGTTTACTGCAATG
GTTTATAATTAATGTATAAATAGTATATAAAGACCGTTATCCCTACCGTGTATCTTTTCT
AAAAAGTTCTCATTGTTCATTTTGTCTATAATCCATTTATATTTTTGTAACATTTCCATG
TGCTGTATTTCTGTAAATTGTTTTAATTAAAATCTTCTAAAAGAAGATTTATAAAGTCAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCGTCTGCGGGAGCTGATCCTGGACACCGGTTGTTGGCTGGAATCTGTTCGGGTCTTTT
ATGGGGCAGGCGGCCGGCCTCAAGCCTGCCGGAGACGCATTATCTTACAAAATGGTAGAA
GACGAACTGGCACTATTTGATAAAAGCATAAATGAATTTTGGAATAGATTCAAAAGCACT
GTTAGTGACACCTCCTGTCAGATGGTGGGACTGAGAGAGAACTACAAGGACTCCCTTAAA
GCATTTGCAGAAAAGCTGTCTGTGAAATTAAAGGAAGAAGAACGAATGGTTGAAATGTTT
CTGGAATATCAAAATCAAATCGACAGGCAGAATAAGCTCATTCAAGAAAAGAAAGATAAT
TTGTTAAAGCTGATTGCTGAAGTAAAAGACAAAAGTCAGGAACTGGAAGCACTGACTGCC
AATATCCAGGACCTCAAGGAAGAATATGCTAGGAAGAAGGAAACTATTTCCACTGCTAAC
AGAGCTAATGAAGAGAGGTTGAAAAGGCTACAAAAATCTGCAGACTTGTATAAAGATCGA
CTTGGACTAGAAATTCGAAAAATTTATGGTGATAAGTTACAGTTTATATTCACTAATATT
GATCCTAAGCATCCTGAGATCCCGTTCATGTTTACCCTGAGCCTAAATTCCGAAAAATAC
ACACAGAACATCTGTATGACCCAGCAATCCCATTCTTGGGCATATATCCAGAAAATGTTC
TTTTCAAACAGTTAAATGCCCCCCTATGTTCATGCAGCACTATTCATGTTTACTGCAATG
GTTTATAATTAATGTATAAATAGTATATAAAGACCGTTATCCCTACCGTGTATCTTTTCT
AAAAAGTTCTCATTGTTCATTTTGTCTATAATCCATTTATATTTTTGTAACATTTCCATG
TGCTGTATTTCTGTAAATTGTTTTAATTAAAATCTTCTAAAAGAAGATTTATAAAGTCAA |
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gi|10190716|ref|NP_065726.1| |
Protein identifier
|
gi|10190716|ref|NP_065726.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
97-250, gnl|bosTau2|chr2 (21953206-21953053) |
|
97-250, gnl|canFam2|chr36 (16723702-16723912) |
|
97-250, gnl|dasNov1|scaffold_1811 (36223-36030) |
|
97-250, gnl|echTel1|scaffold_278204 (7336-7497) |
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97-250, gnl|galGal2|chr7 (19715838-19715638) |
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97-250, gnl|hg17|chr2 (169571364-169571557) |
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97-250, gnl|Hg17|chr2 (169571551-169571404) |
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97-250, gnl|loxAfr1|scaffold_28128 (11238-11048) |
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97-250, gnl|mm7|chr2 (69135532-69135734) |
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97-250, gnl|Mm7|chr2 (69135728-69135575) |
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97-250, gnl|monDom2|scaffold_2 (66982949-66983138) |
|
97-250, gnl|oryCun1|scaffold_205113 (22632-22828) |
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97-250, gnl|panTro1|chr13 (59018419-59018612) |
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97-250, gnl|rheMac2|chr12 (32528903-32529096) |
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97-250, gnl|rn3|chr3 (51269596-51269798) |
| |
|
317-472, gnl|bosTau2|chr2 (21947669-21947512) |
|
317-472, gnl|Hg17|chr2 (169559401-169559244) |
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317-472, gnl|Mm7|chr2 (69133267-69133110) |
| |
|
653-766, gnl|bosTau2|chr16 (33704357-33704472) |
| |
|
769-951, gnl|bosTau2|chr2 (21942184-21942004) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
97-250, gnl|bosTau2|chr2 (21953206-21953053) |
|
97-250, gnl|canFam2|chr36 (16723702-16723912) |
|
97-250, gnl|dasNov1|scaffold_1811 (36223-36030) |
|
97-250, gnl|echTel1|scaffold_278204 (7336-7497) |
|
97-250, gnl|galGal2|chr7 (19715838-19715638) |
|
97-250, gnl|hg17|chr2 (169571364-169571557) |
|
97-250, gnl|Hg17|chr2 (169571551-169571404) |
|
97-250, gnl|loxAfr1|scaffold_28128 (11238-11048) |
|
97-250, gnl|mm7|chr2 (69135532-69135734) |
|
97-250, gnl|Mm7|chr2 (69135728-69135575) |
|
97-250, gnl|monDom2|scaffold_2 (66982949-66983138) |
|
97-250, gnl|oryCun1|scaffold_205113 (22632-22828) |
|
97-250, gnl|panTro1|chr13 (59018419-59018612) |
|
97-250, gnl|rheMac2|chr12 (32528903-32529096) |
|
97-250, gnl|rn3|chr3 (51269596-51269798) |
| |
|
317-472, gnl|bosTau2|chr2 (21947669-21947512) |
|
317-472, gnl|Hg17|chr2 (169559401-169559244) |
|
317-472, gnl|Mm7|chr2 (69133267-69133110) |
| |
|
653-766, gnl|bosTau2|chr16 (33704357-33704472) |
| |
|
769-951, gnl|bosTau2|chr2 (21942184-21942004) |
|
nca (0.273748) |
|
eye (0.170503) |
|
lin (0.145603) |
|
pla (0.133672) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
nca (0.273748) |
|
eye (0.170503) |
|
lin (0.145603) |
|
pla (0.133672) |
|
med (0.116252) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
