Non-Coding RNA Search

Ss1.1-Pig4-TMW8042O20.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTAAACTGCTTTATTAATTTCACATTAT
GAAAAGAATATTTCTTCTTATAATTGGATGAAACTGCCCTGCTGAGAGAAAATTTTGCTC
CAAGACACAACAATATTCGATTAGAAACTAGTAAGTGGAAACACTAAAAAGTTTACAGAA
AAAGTAAATCACAAAACTACAAGCATGTAGAGCAGAGGCTACACATTATTAACCTCAGGG
AAAACCTTACGATTCAAGGTATAAGGCAAAAGTCATAATGATTGTCAGGTTCAGGAGTTT
GGTAGCGCACATGATGCCTCATTTGCTGCTCCCTAGTCCTTCTCCTTACTTCCATCATCT
GCCCTACGTACTTTTCTACATCATCTCCCACTTCATTGCGATCAACATGCTTGTTGGTTA
TGGCCCATCGAAAATTAGGGACAAGTCGCCTAACCCGCCCGAGCCTGCCATTTCCTCCAG
GCTTCTGGGCTCCGCCCTTTCCCAAATCGCGCGACTCCTCTCCATTCTGCAAAGGTGCCT
GGTCCCCTCCTTCGTTTTCCTGTTGGGCATTTTCCATGCTGAGATTTTTCACTGCTTGCT
GCTCCTCTTTGGACGCCATTGCTCCTGGGCCTATCCTTGCTGTCTCCTGCTCCTCCCGAT
TGTCACCACGAGTGCACCGCCGCGACACCTAAACCCGCAGACCTGCTTTCCCTGCACCTC
CAACGCTTGGGGGCCGCCCCCGGCCCGCACTCCCTCAGGCCAGACGGGAGCAGGGACCGA
GAATGCAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTAAACTGCTTTATTAATTTCACATTAT
GAAAAGAATATTTCTTCTTATAATTGGATGAAACTGCCCTGCTGAGAGAAAATTTTGCTC
CAAGACACAACAATATTCGATTAGAAACTAGTAAGTGGAAACACTAAAAAGTTTACAGAA
AAAGTAAATCACAAAACTACAAGCATGTAGAGCAGAGGCTACACATTATTAACCTCAGGG
AAAACCTTACGATTCAAGGTATAAGGCAAAAGTCATAATGATTGTCAGGTTCAGGAGTTT
GGTAGCGCACATGATGCCTCATTTGCTGCTCCCTAGTCCTTCTCCTTACTTCCATCATCT
GCCCTACGTACTTTTCTACATCATCTCCCACTTCATTGCGATCAACATGCTTGTTGGTTA
TGGCCCATCGAAAATTAGGGACAAGTCGCCTAACCCGCCCGAGCCTGCCATTTCCTCCAG
GCTTCTGGGCTCCGCCCTTTCCCAAATCGCGCGACTCCTCTCCATTCTGCAAAGGTGCCT
GGTCCCCTCCTTCGTTTTCCTGTTGGGCATTTTCCATGCTGAGATTTTTCACTGCTTGCT
GCTCCTCTTTGGACGCCATTGCTCCTGGGCCTATCCTTGCTGTCTCCTGCTCCTCCCGAT
TGTCACCACGAGTGCACCGCCGCGACACCTAAACCCGCAGACCTGCTTTCCCTGCACCTC
CAACGCTTGGGGGCCGCCCCCGGCCCGCACTCCCTCAGGCCAGACGGGAGCAGGGACCGA
GAATGCAGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NWD9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NWD9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-545, - strand, RNAz p=0.608144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-545, - strand, RNAz p=0.608144

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-783, gnl|bosTau2|chr26 (19793344-19794159)
               

               
               7-783, gnl|Hg17|chrX (102370419-102372018)
               


               
               188-619, gnl|bosTau2|chr10 (21396205-21395791)
               

               
               188-619, gnl|Hg17|chrX (102277651-102277227)
               

               
               188-619, gnl|Mm7|chr1 (150194490-150194875)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-783, gnl|bosTau2|chr26 (19793344-19794159)
               

               
               7-783, gnl|Hg17|chrX (102370419-102372018)
               


               
               188-619, gnl|bosTau2|chr10 (21396205-21395791)
               

               
               188-619, gnl|Hg17|chrX (102277651-102277227)
               

               
               188-619, gnl|Mm7|chr1 (150194490-150194875)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               nje (1.6592)
               

               
               cbe (1.19617)
               

               
               spc (0.680195)
               

               
               pgl (0.592417)
               

               
               cte (0.58548)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               ute (0.531138)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (1.6592)
               

               
               cbe (1.19617)
               

               
               spc (0.680195)
               

               
               pgl (0.592417)
               

               
               cte (0.58548)
               

               
               hyp (0.571347)
               

               
               fce (0.543183)
               

               
               ute (0.531138)
               

               
               ebs (0.473205)
               

               
               ecc (0.46014)
               

               
               eye (0.341006)
               

               
               cut (0.339847)
               

               
               fhi (0.339155)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	7-783, gnl\|bosTau2\|chr26 (19793344-19794159)
	7-783, gnl\|Hg17\|chrX (102370419-102372018)

	188-619, gnl\|bosTau2\|chr10 (21396205-21395791)
	188-619, gnl\|Hg17\|chrX (102277651-102277227)
	188-619, gnl\|Mm7\|chr1 (150194490-150194875)

	nje (1.6592)
	cbe (1.19617)
	spc (0.680195)
	pgl (0.592417)
	cte (0.58548)
	hyp (0.571347)
	fce (0.543183)
	ute (0.531138)
	ebs (0.473205)
	ecc (0.46014)
	eye (0.341006)
	cut (0.339847)
	fhi (0.339155)
	fco (0.314416)
	liv (0.292569)
	ova (0.258264)
	pan (0.23596)
	mgp (0.230681)
	ece (0.229305)
	eje (0.197668)
	sag (0.182715)
	ski (0.146735)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	cbr (0.127975)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	jej (0.0989218)
	ldo (0.0970026)