Non-Coding RNA Search

Ss1.1-Pig4-TMW8042O24.3

Sequence:


               
               TGGAAGAATTTTACCATTTAACAAATCTCTCATTGTTGAATCTCATTCAGACGGAAATTC
CCTTTTAAGAGTCTCTGAATGTCTGCCTGCAAAGGAATGTAAACATTGCCAGGTACCATT
CATTACTCTGGAGTGGCTTCTTTAGTTATGTTCTTCTAATAGTTCTAATATCAAGTCCTC
AGGATTATTTCTAAAGTTCACAGCATTCTCAAAGGGACCAAGGCTGTGTGAATACGTGAC
TCAGAATTTGAAAAGGAGTTCAGTTACTAATTCTTCTCTTCACGTGACACTTTTAAGCAG
CCAGTTTGACTGGAATTAACCATCTTGGCACAGCCTAAAAACAAGTAATATGAAATGAAA
TTTTCTTTCAAAGTCTTCTGAGATGAGAGACCATGTCAGTGGGACCCCCAAGGTAGCCTA
GGTACGTACTTGCCTCCAAGGGCCTCATTCCTCTGCTGTTACTTATGAGTACTTTGATTT
TTACCACTGAATCTGCTTTCTCTGCCTTTTCCACACTTGAAAAAATACATGGCAGCTCAC
TTCACCTTAAAACCCTGAAAACCCCAAGAAGGAAAGAAAAGGATGATATGGAGAAACTCT
TGCCATAAATGCCAGTTCTGGCTCTTAGTTTAGCTTTTTCCATCAGTTGAAATTATGATC
TGTGGCTTGTTTTGTTGTTACTGTTTGTTTTTTCGTTTTTTGTTTCGCTTTTTTTTTAAC
ATTCATTTAATAAGATAATGGGCAATAGCAACGTTTTTTACTCCCAGGAATATAATTTAT
CAAATTGAACTATTTTATTTGCCAAAGAAATTTGTTTATAATATCACGGGTAATTGTTAA
GTGTCAAAACACGGCTTTCCTTATTCTACAAAAAAAAGGTGATGAATGATATGGCTTTTG
TTTGTTTCTGAAGCCTAATTTCATTCATTTATCAGAAAGGCTCATTCATGCAAGGTTTTA
GAAAGCAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGAATTTTACCATTTAACAAATCTCTCATTGTTGAATCTCATTCAGACGGAAATTC
CCTTTTAAGAGTCTCTGAATGTCTGCCTGCAAAGGAATGTAAACATTGCCAGGTACCATT
CATTACTCTGGAGTGGCTTCTTTAGTTATGTTCTTCTAATAGTTCTAATATCAAGTCCTC
AGGATTATTTCTAAAGTTCACAGCATTCTCAAAGGGACCAAGGCTGTGTGAATACGTGAC
TCAGAATTTGAAAAGGAGTTCAGTTACTAATTCTTCTCTTCACGTGACACTTTTAAGCAG
CCAGTTTGACTGGAATTAACCATCTTGGCACAGCCTAAAAACAAGTAATATGAAATGAAA
TTTTCTTTCAAAGTCTTCTGAGATGAGAGACCATGTCAGTGGGACCCCCAAGGTAGCCTA
GGTACGTACTTGCCTCCAAGGGCCTCATTCCTCTGCTGTTACTTATGAGTACTTTGATTT
TTACCACTGAATCTGCTTTCTCTGCCTTTTCCACACTTGAAAAAATACATGGCAGCTCAC
TTCACCTTAAAACCCTGAAAACCCCAAGAAGGAAAGAAAAGGATGATATGGAGAAACTCT
TGCCATAAATGCCAGTTCTGGCTCTTAGTTTAGCTTTTTCCATCAGTTGAAATTATGATC
TGTGGCTTGTTTTGTTGTTACTGTTTGTTTTTTCGTTTTTTGTTTCGCTTTTTTTTTAAC
ATTCATTTAATAAGATAATGGGCAATAGCAACGTTTTTTACTCCCAGGAATATAATTTAT
CAAATTGAACTATTTTATTTGCCAAAGAAATTTGTTTATAATATCACGGGTAATTGTTAA
GTGTCAAAACACGGCTTTCCTTATTCTACAAAAAAAAGGTGATGAATGATATGGCTTTTG
TTTGTTTCTGAAGCCTAATTTCATTCATTTATCAGAAAGGCTCATTCATGCAAGGTTTTA
GAAAGCAGATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-970, gnl|bosTau2|chr1 (79486371-79485386)
               

               
               1-970, gnl|Hg17|chr3 (142815520-142816499)
               

               
               1-970, gnl|Mm7|chr9 (96182492-96181316)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-970, gnl|bosTau2|chr1 (79486371-79485386)
               

               
               1-970, gnl|Hg17|chr3 (142815520-142816499)
               

               
               1-970, gnl|Mm7|chr9 (96182492-96181316)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               kid (0.259471)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	1-970, gnl\|bosTau2\|chr1 (79486371-79485386)
	1-970, gnl\|Hg17\|chr3 (142815520-142816499)
	1-970, gnl\|Mm7\|chr9 (96182492-96181316)

	kid (0.259471)
	fat (0.147427)
	liv (0.146284)
	sug (0.127291)
	cbl (0.114797)
	eje (0.0988338)