Ss1.1-Pig4-TMW8042P03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAAAAATTATCTAATTTACGAAGCTGGAGCTGAATTGAATGTTAAGTAATGGCAACAG GTGACTTAAAAAGAAGCTTACGGAACCTAGAGCAAGTTCTTCGCTCTCTAAATTATCCTA GAGAGGTGGATTGTGTAGGGTTGGTAAAGGGCGATATAGCAGCATCTTTGCCCATCATCA GCTATTCCCTTACCTCGTATTCACCTTATGTAGCAGAACTTCTGGTGGAGTCCAATGTGG AGCTCATAGCAAAGAACGACTTGCGCTTTATAGATACTGTCTACAAGCTTCTTCGTGATC ATTTTAATTATAAACCAATCTTGACAAAAAAGCAGTTTCTCCAGTGTGGATTTGCTGAAT GGAAAATCCAAATTATTTGTGATATTTTAAATTGTGTGATGAAAAAGCACAAGGAGTTGA GTGGTCTTGAGAAGACTCCATCACAACAAAGGAAAAAAATCAGTTCTATTAAGTCCGAAC CTTGTTCAGGTGCTGAGAAGACATCTGCAGAACCTGTCGGCATTGATGTTACCGGCAGGT TTGTGACTTCAGGAAAGAAGAAAGCTGTGGTGATCCGCCACCTGTACAGTGAAGATGGTG TTAACATTCCTGAAGATCCATCAGCAGATGTTCATGAAGCATTTGATGTCTGTGACTTGA AGACTGCTGACCTCAAGATTCCTGAATTACAGGTTCCTGAGATTAACTGTGAGCAACAAG ATGTAAAAGTCAATCCTGAGATTACTGCACTACAGGTGATGCTTGCCGAATGCCAAGAAA AGCTTAGGAAACTGACTTGCCTAGAGAATAGATTAGACTCTTTGGAAACGAAAATGAAAG GGAAAGTGATGGTGAATGAAAAAACCTGGACCAATCTTCTAAGTCGTGTCACTCTTCTTG AAACAGAAATGCTTTTATCTAAAAAGAATGACAACTATATAGAGTTTAATGAAATGAGTG AAGAGTATGCTTCTAGTAGCGACATGGATAGTCTCAATCCGGATAGAAAAAGTCAAGAAG AAAGGCAAGCAAATATTCCTCTGTCTTCTGGTTATAGTACAGTATCATCAGATTCAACTC CCAGAACCTCAACTGTTAATTACTATGGTTTGAAAGAGATTTCAGAGGAAACAACAATCC AGAAAATGGAAAGGATGAAAAAAATGTTTGAAGAAACTGCAGAGTTACTGAAATGTCCAA ATCACTAATTATAGAATTTTCTACATGAACTTCTCTAGGACTTTGGCTACTGTACATATT GTACATTTTGAGTTCTCTATGCAATTTTAATATACGGGTGATATTTTCATTAAAATTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAAAAATTATCTAATTTACGAAGCTGGAGCTGAATTGAATGTTAAGTAATGGCAACAG GTGACTTAAAAAGAAGCTTACGGAACCTAGAGCAAGTTCTTCGCTCTCTAAATTATCCTA GAGAGGTGGATTGTGTAGGGTTGGTAAAGGGCGATATAGCAGCATCTTTGCCCATCATCA GCTATTCCCTTACCTCGTATTCACCTTATGTAGCAGAACTTCTGGTGGAGTCCAATGTGG AGCTCATAGCAAAGAACGACTTGCGCTTTATAGATACTGTCTACAAGCTTCTTCGTGATC ATTTTAATTATAAACCAATCTTGACAAAAAAGCAGTTTCTCCAGTGTGGATTTGCTGAAT GGAAAATCCAAATTATTTGTGATATTTTAAATTGTGTGATGAAAAAGCACAAGGAGTTGA GTGGTCTTGAGAAGACTCCATCACAACAAAGGAAAAAAATCAGTTCTATTAAGTCCGAAC CTTGTTCAGGTGCTGAGAAGACATCTGCAGAACCTGTCGGCATTGATGTTACCGGCAGGT TTGTGACTTCAGGAAAGAAGAAAGCTGTGGTGATCCGCCACCTGTACAGTGAAGATGGTG TTAACATTCCTGAAGATCCATCAGCAGATGTTCATGAAGCATTTGATGTCTGTGACTTGA AGACTGCTGACCTCAAGATTCCTGAATTACAGGTTCCTGAGATTAACTGTGAGCAACAAG ATGTAAAAGTCAATCCTGAGATTACTGCACTACAGGTGATGCTTGCCGAATGCCAAGAAA AGCTTAGGAAACTGACTTGCCTAGAGAATAGATTAGACTCTTTGGAAACGAAAATGAAAG GGAAAGTGATGGTGAATGAAAAAACCTGGACCAATCTTCTAAGTCGTGTCACTCTTCTTG AAACAGAAATGCTTTTATCTAAAAAGAATGACAACTATATAGAGTTTAATGAAATGAGTG AAGAGTATGCTTCTAGTAGCGACATGGATAGTCTCAATCCGGATAGAAAAAGTCAAGAAG AAAGGCAAGCAAATATTCCTCTGTCTTCTGGTTATAGTACAGTATCATCAGATTCAACTC CCAGAACCTCAACTGTTAATTACTATGGTTTGAAAGAGATTTCAGAGGAAACAACAATCC AGAAAATGGAAAGGATGAAAAAAATGTTTGAAGAAACTGCAGAGTTACTGAAATGTCCAA ATCACTAATTATAGAATTTTCTACATGAACTTCTCTAGGACTTTGGCTACTGTACATATT GTACATTTTGAGTTCTCTATGCAATTTTAATATACGGGTGATATTTTCATTAAAATTTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 277-395, - strand, RNAz p=0.60683 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 277-395, - strand, RNAz p=0.60683 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 277-434, gnl|bosTau2|chr8 (4063079-4063235) | |
| 277-434, gnl|canFam2|chr25 (27794597-27794767) | |
| 277-434, gnl|dasNov1|scaffold_4947 (59367-59197) | |
| 277-434, gnl|echTel1|scaffold_181535 (1381-1211) | |
| 277-434, gnl|galGal2|chr4 (44313946-44314128) | |
| 277-434, gnl|hg17|chr4 (175599570-175599738) | |
| 277-434, gnl|Hg17|chr4 (175599574-175599730) | |
| 277-434, gnl|loxAfr1|scaffold_8548 (28807-28977) | |
| 277-434, gnl|mm7|chr8 (54943573-54943404) | |
| 277-434, gnl|Mm7|chr8 (54943563-54943410) | |
| 277-434, gnl|monDom2|scaffold_9 (52469674-52469844) | |
| 277-434, gnl|panTro1|chr3 (193582000-193582168) | |
| 277-434, gnl|rheMac2|chr5 (166356907-166357075) | |
| 277-434, gnl|rn3|chr16 (37145778-37145947) | |
| 277-434, gnl|xenTro1|scaffold_25 (1044402-1044206) | |
| 720-926, gnl|bosTau2|chr8 (4071651-4071857) | |
| 720-926, gnl|canFam2|chr25 (27797313-27797535) | |
| 720-926, gnl|echTel1|scaffold_181633 (196-418) | |
| 720-926, gnl|galGal2|chr4 (44317109-44317334) | |
| 720-926, gnl|hg17|chr4 (175605722-175605944) | |
| 720-926, gnl|Hg17|chr4 (175605731-175605937) | |
| 720-926, gnl|loxAfr1|scaffold_8548 (32516-32738) | |
| 720-926, gnl|mm7|chr8 (54939205-54938983) | |
| 720-926, gnl|Mm7|chr8 (54939194-54938988) | |
| 720-926, gnl|monDom2|scaffold_9 (52483763-52483984) | |
| 720-926, gnl|oryCun1|scaffold_185101 (3516-3738) | |
| 720-926, gnl|panTro1|chr3 (193588152-193588374) | |
| 720-926, gnl|rheMac2|chr5 (166374892-166375114) | |
| 720-926, gnl|rn3|chr16 (37149807-37150029) | |
| 720-926, gnl|xenTro1|scaffold_25 (1038978-1038758) | |
| 1002-1139, gnl|bosTau2|chr8 (4074923-4075060) | |
| 1002-1139, gnl|canFam2|chr25 (27802148-27802511) | |
| 1002-1139, gnl|dasNov1|scaffold_14168 (18529-18158) | |
| 1002-1139, gnl|echTel1|scaffold_181633 (7857-8225) | |
| 1002-1139, gnl|galGal2|chr4 (44321720-44322130) | |
| 1002-1139, gnl|hg17|chr4 (175611965-175612318) | |
| 1002-1139, gnl|Hg17|chr4 (175612046-175612180) | |
| 1002-1139, gnl|loxAfr1|scaffold_8548 (44249-44619) | |
| 1002-1139, gnl|mm7|chr8 (54932260-54931901) | |
| 1002-1139, gnl|Mm7|chr8 (54932193-54932057) | |
| 1002-1139, gnl|monDom2|scaffold_9 (52501899-52502265) | |
| 1002-1139, gnl|oryCun1|scaffold_52436 (4-365) | |
| 1002-1139, gnl|panTro1|chr3 (193594267-193594620) | |
| 1002-1139, gnl|rheMac2|chr5 (166380919-166381271) | |
| 1002-1139, gnl|rn3|chr16 (37158211-37158580) | |
| 1166-1320, gnl|bosTau2|chr8 (4075939-4076095) | |
| 1166-1320, gnl|canFam2|chr25 (27803412-27803811) | |
| 1166-1320, gnl|dasNov1|scaffold_14168 (17240-16837) | |
| 1166-1320, gnl|echTel1|scaffold_181633 (9124-9522) | |
| 1166-1320, gnl|galGal2|chr4 (44323017-44323431) | |
| 1166-1320, gnl|hg17|chr4 (175613214-175613631) | |
| 1166-1320, gnl|Hg17|chr4 (175613216-175613377) | |
| 1166-1320, gnl|loxAfr1|scaffold_8548 (45514-45916) | |
| 1166-1320, gnl|mm7|chr8 (54931028-54930625) | |
| 1166-1320, gnl|Mm7|chr8 (54931024-54930870) | |
| 1166-1320, gnl|monDom2|scaffold_9 (52502975-52503368) | |
| 1166-1320, gnl|oryCun1|scaffold_52436 (1270-1672) | |
| 1166-1320, gnl|panTro1|chr3 (193595516-193595938) | |
| 1166-1320, gnl|rheMac2|chr5 (166382178-166382585) | |
| 1166-1320, gnl|rn3|chr16 (37159478-37159889) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 277-434, gnl|bosTau2|chr8 (4063079-4063235) | |
| 277-434, gnl|canFam2|chr25 (27794597-27794767) | |
| 277-434, gnl|dasNov1|scaffold_4947 (59367-59197) | |
| 277-434, gnl|echTel1|scaffold_181535 (1381-1211) | |
| 277-434, gnl|galGal2|chr4 (44313946-44314128) | |
| 277-434, gnl|hg17|chr4 (175599570-175599738) | |
| 277-434, gnl|Hg17|chr4 (175599574-175599730) | |
| 277-434, gnl|loxAfr1|scaffold_8548 (28807-28977) | |
| 277-434, gnl|mm7|chr8 (54943573-54943404) | |
| 277-434, gnl|Mm7|chr8 (54943563-54943410) | |
| 277-434, gnl|monDom2|scaffold_9 (52469674-52469844) | |
| 277-434, gnl|panTro1|chr3 (193582000-193582168) | |
| 277-434, gnl|rheMac2|chr5 (166356907-166357075) | |
| 277-434, gnl|rn3|chr16 (37145778-37145947) | |
| 277-434, gnl|xenTro1|scaffold_25 (1044402-1044206) | |
| 720-926, gnl|bosTau2|chr8 (4071651-4071857) | |
| 720-926, gnl|canFam2|chr25 (27797313-27797535) | |
| 720-926, gnl|echTel1|scaffold_181633 (196-418) | |
| 720-926, gnl|galGal2|chr4 (44317109-44317334) | |
| 720-926, gnl|hg17|chr4 (175605722-175605944) | |
| 720-926, gnl|Hg17|chr4 (175605731-175605937) | |
| 720-926, gnl|loxAfr1|scaffold_8548 (32516-32738) | |
| 720-926, gnl|mm7|chr8 (54939205-54938983) | |
| 720-926, gnl|Mm7|chr8 (54939194-54938988) | |
| 720-926, gnl|monDom2|scaffold_9 (52483763-52483984) | |
| 720-926, gnl|oryCun1|scaffold_185101 (3516-3738) | |
| 720-926, gnl|panTro1|chr3 (193588152-193588374) | |
| 720-926, gnl|rheMac2|chr5 (166374892-166375114) | |
| 720-926, gnl|rn3|chr16 (37149807-37150029) | |
| 720-926, gnl|xenTro1|scaffold_25 (1038978-1038758) | |
| 1002-1139, gnl|bosTau2|chr8 (4074923-4075060) | |
| 1002-1139, gnl|canFam2|chr25 (27802148-27802511) | |
| 1002-1139, gnl|dasNov1|scaffold_14168 (18529-18158) | |
| 1002-1139, gnl|echTel1|scaffold_181633 (7857-8225) | |
| 1002-1139, gnl|galGal2|chr4 (44321720-44322130) | |
| 1002-1139, gnl|hg17|chr4 (175611965-175612318) | |
| 1002-1139, gnl|Hg17|chr4 (175612046-175612180) | |
| 1002-1139, gnl|loxAfr1|scaffold_8548 (44249-44619) | |
| 1002-1139, gnl|mm7|chr8 (54932260-54931901) | |
| 1002-1139, gnl|Mm7|chr8 (54932193-54932057) | |
| 1002-1139, gnl|monDom2|scaffold_9 (52501899-52502265) | |
| 1002-1139, gnl|oryCun1|scaffold_52436 (4-365) | |
| 1002-1139, gnl|panTro1|chr3 (193594267-193594620) | |
| 1002-1139, gnl|rheMac2|chr5 (166380919-166381271) | |
| 1002-1139, gnl|rn3|chr16 (37158211-37158580) | |
| 1166-1320, gnl|bosTau2|chr8 (4075939-4076095) | |
| 1166-1320, gnl|canFam2|chr25 (27803412-27803811) | |
| 1166-1320, gnl|dasNov1|scaffold_14168 (17240-16837) | |
| 1166-1320, gnl|echTel1|scaffold_181633 (9124-9522) | |
| 1166-1320, gnl|galGal2|chr4 (44323017-44323431) | |
| 1166-1320, gnl|hg17|chr4 (175613214-175613631) | |
| 1166-1320, gnl|Hg17|chr4 (175613216-175613377) | |
| 1166-1320, gnl|loxAfr1|scaffold_8548 (45514-45916) | |
| 1166-1320, gnl|mm7|chr8 (54931028-54930625) | |
| 1166-1320, gnl|Mm7|chr8 (54931024-54930870) | |
| 1166-1320, gnl|monDom2|scaffold_9 (52502975-52503368) | |
| 1166-1320, gnl|oryCun1|scaffold_52436 (1270-1672) | |
| 1166-1320, gnl|panTro1|chr3 (193595516-193595938) | |
| 1166-1320, gnl|rheMac2|chr5 (166382178-166382585) | |
| 1166-1320, gnl|rn3|chr16 (37159478-37159889) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| ret (0.128733) | |
| thg (0.126791) |