Non-Coding RNA Search

Ss1.1-Pig4-TMW8042P07.3

Sequence:


               
               GGACTGTACACCTGCCACATCGGCAAGTTCTCCAACTGGACCAACGGCGCGTTCCTTGCG
CAGGGCTCGCTGCTCAACGTGCGCTCCTTCCTGGGCGTCGGTGCGCCCCACGGCCCGCAC
CTGTCCGTCCCGCCGCCGCCGCAGCAGCAGCCGCCGGTCACCGTGGCCGCGGGAGTGCTC
CACGGCGACAAGGCCTCGGCCCGCAGCAGCCCCTCCCTCCCAGAGAGAGACCTCATCCCC
AGGCCAGACTCACCGGCCCAGCAGTTAAAGTCGCCCTTCCAGCCTGTGCGCGACAACTCC
CTGGCCCCGCAGGAGGGGACGCCGCGGATCCTAGCAGCCCTCCCGTCAGCCTGATTCAGG
GTCTTCTTTTACTTTTGCGGGGGGAGGGGGGAGAAGTTCGGGAGGGAGGGGGTGAGGGAG
GAATTAGGACAAATATTTCAGACCGGTGTAAAGGACAAATCTGGCAACGAAGTCAAGGAC
TCCCATCCATCGCTTTCTGCAGAAAGGGGCTCTTCCAGCGGCGCTTGTGTCCAGGCAGCC
TAGCCGCTGCCCGCCGCTCGAGTGGCTGTCACCGCACTCTGGGTGATTAGCGGTAAATGC
CCTCACGTGCTTGTGTCGTTTTTTTTTTCTTTCTGTATATAGAGTGATTTCAAATTGTAC
ATAGCGCGTCAGCGAACTTGTCTAAATCATATATTTTTGTCTAATAAACGAAATGAAATG
GATGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGTACACCTGCCACATCGGCAAGTTCTCCAACTGGACCAACGGCGCGTTCCTTGCG
CAGGGCTCGCTGCTCAACGTGCGCTCCTTCCTGGGCGTCGGTGCGCCCCACGGCCCGCAC
CTGTCCGTCCCGCCGCCGCCGCAGCAGCAGCCGCCGGTCACCGTGGCCGCGGGAGTGCTC
CACGGCGACAAGGCCTCGGCCCGCAGCAGCCCCTCCCTCCCAGAGAGAGACCTCATCCCC
AGGCCAGACTCACCGGCCCAGCAGTTAAAGTCGCCCTTCCAGCCTGTGCGCGACAACTCC
CTGGCCCCGCAGGAGGGGACGCCGCGGATCCTAGCAGCCCTCCCGTCAGCCTGATTCAGG
GTCTTCTTTTACTTTTGCGGGGGGAGGGGGGAGAAGTTCGGGAGGGAGGGGGTGAGGGAG
GAATTAGGACAAATATTTCAGACCGGTGTAAAGGACAAATCTGGCAACGAAGTCAAGGAC
TCCCATCCATCGCTTTCTGCAGAAAGGGGCTCTTCCAGCGGCGCTTGTGTCCAGGCAGCC
TAGCCGCTGCCCGCCGCTCGAGTGGCTGTCACCGCACTCTGGGTGATTAGCGGTAAATGC
CCTCACGTGCTTGTGTCGTTTTTTTTTTCTTTCTGTATATAGAGTGATTTCAAATTGTAC
ATAGCGCGTCAGCGAACTTGTCTAAATCATATATTTTTGTCTAATAAACGAAATGAAATG
GATGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-223, gnl|bosTau2|chr20 (41249865-41250081)
               

               
               1-223, gnl|Hg17|chr5 (3653146-3653374)
               

               
               1-223, gnl|Mm7|chr13 (68888753-68888525)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr20 (41249865-41250081)
               

               
               1-223, gnl|Hg17|chr5 (3653146-3653374)
               

               
               1-223, gnl|Mm7|chr13 (68888753-68888525)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cga (0.279096)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fat (0.147427)
               

               
               pty (0.142714)

	1-223, gnl\|bosTau2\|chr20 (41249865-41250081)
	1-223, gnl\|Hg17\|chr5 (3653146-3653374)
	1-223, gnl\|Mm7\|chr13 (68888753-68888525)

	cga (0.279096)
	eep (0.245128)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	fat (0.147427)
	pty (0.142714)