Non-Coding RNA Search

Ss1.1-Pig4-TMW8042P09.5

Sequence:


               
               AGGCAGGCATGTTTTATAAGTCAAGGGGTTATTTCCAGAGATCATTTTAATGAGCATTCC
TCTTAAAATATTCTGGGTGGAAAGTTGTGATTGGATCTGGTGTTAAGGATTAGAAAGGAG
CCTCTAAAAGTTTGGGAGGTTTCCTGGTAGCAGTTATTCTAGGATATGTCTATCTTCTAA
GATGGTTTTTGGAGGGATTCTTAGAAGGAACACGTTCCTGTGGGAGGGACTTCACTCTGG
TCTTTCTCCTCTTGTGCAGTAAAATTGTGCAGTGCATTTCACACTGACCTGCATTGAATT
TGAGTTGATGTGACGAGAGATACAGTATTTTTTTAGTCCAGGAGATTCTTTTTCTTAGAA
GATAATAGGAAAAATTATTGTTGGATATCTTTGCTGGAATCTAAAAATTAGCTCTTATGC
CAGGAAAAGGAAAGGCCCAAGAGTCATTTCACTTTTTCCATCATAGTTTGTAACGCTACC
TTTTTGGATGCTCAGTCCTTTTTCAAACCTTTTTTTCTTAATTCACGACAGTTTAATTTC
AAACTTTGACTATTTTCTTTTGTAACTTTAAAATAGAGTGCTTTTGACATGAATTTTTGC
TTATGTATGTATTTGTAAGTTGAGACCAAATGGGCAAAGTCTTGGGTAGGTAACATTTGT
GATGTGTTTGTACTGGAACAAATGTAAAAGGGTCACAAAGAGTAGAAAGAGAGTCATAAA
TGACTGCTTGATATATAAATGCATTACTTGTGGTGCTCTATATAATGGGATATATTGAAA
AAATTTTGTATATACAGTATGTCAGCATTTCTTAGTAACTTCTCTTGAATCCATTTTTAA
TATCTAATATTATACAGGTTGGGGAGTTATATACTCTTCAGGCCAGTACCATCCAGACTG
TATAAATTTATGAAATAAATTGAAAAATTCATCATTCCCCTGTATTCAAGACCAAAGCAC
ATAAATGCTAATGTAGGGCTCAGAGGGGAAATATATTGCTCCTGAATATTTGAGAAAATG
TGAAGTCCTTTCAAGAAAATCTAATAAACATAATAATCATAGCCTGCTGACACTAAGGAA
AAAGGACCTCATTCACTCTTTCTTTTATGCAGCGGTTTACTGGTCCCTACTGATTTCCAA
ATTGGATCGCCATAGTAAATTATCTATGCTGGTACCTGTGAAAGTAAGCCCTGGGATCCA
TATTTGTTTTCTGTTCTGCTTAAATCAGCAAGAATGATAAATTTGATGGTGTGAAATTGG
AAGTGTCAAGGGCTCTCTTTGGTGATTGAGCAAAATAATGTCTCCACTTGTAATTTACTG
TGACCCTGTTTCACTGTATGTGCTTTGTATATCTAATATTTATTTCAATACAAATTAAAT
TGTTCCTTCATCTGTACTGTTATAGCTAAGATTTTATTGATGTAAAAATCAAATTGTGTA
ATAAAAAATCTCTCTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCATTT
AGTTAGAATTTAGCCTTCCATTGTGCTTCATTGCCTTATTGTTAGAATAAGGTAAATTTG
AATTCTTCTATTGTCTTCACCTCATCTCAAGTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAGGCATGTTTTATAAGTCAAGGGGTTATTTCCAGAGATCATTTTAATGAGCATTCC
TCTTAAAATATTCTGGGTGGAAAGTTGTGATTGGATCTGGTGTTAAGGATTAGAAAGGAG
CCTCTAAAAGTTTGGGAGGTTTCCTGGTAGCAGTTATTCTAGGATATGTCTATCTTCTAA
GATGGTTTTTGGAGGGATTCTTAGAAGGAACACGTTCCTGTGGGAGGGACTTCACTCTGG
TCTTTCTCCTCTTGTGCAGTAAAATTGTGCAGTGCATTTCACACTGACCTGCATTGAATT
TGAGTTGATGTGACGAGAGATACAGTATTTTTTTAGTCCAGGAGATTCTTTTTCTTAGAA
GATAATAGGAAAAATTATTGTTGGATATCTTTGCTGGAATCTAAAAATTAGCTCTTATGC
CAGGAAAAGGAAAGGCCCAAGAGTCATTTCACTTTTTCCATCATAGTTTGTAACGCTACC
TTTTTGGATGCTCAGTCCTTTTTCAAACCTTTTTTTCTTAATTCACGACAGTTTAATTTC
AAACTTTGACTATTTTCTTTTGTAACTTTAAAATAGAGTGCTTTTGACATGAATTTTTGC
TTATGTATGTATTTGTAAGTTGAGACCAAATGGGCAAAGTCTTGGGTAGGTAACATTTGT
GATGTGTTTGTACTGGAACAAATGTAAAAGGGTCACAAAGAGTAGAAAGAGAGTCATAAA
TGACTGCTTGATATATAAATGCATTACTTGTGGTGCTCTATATAATGGGATATATTGAAA
AAATTTTGTATATACAGTATGTCAGCATTTCTTAGTAACTTCTCTTGAATCCATTTTTAA
TATCTAATATTATACAGGTTGGGGAGTTATATACTCTTCAGGCCAGTACCATCCAGACTG
TATAAATTTATGAAATAAATTGAAAAATTCATCATTCCCCTGTATTCAAGACCAAAGCAC
ATAAATGCTAATGTAGGGCTCAGAGGGGAAATATATTGCTCCTGAATATTTGAGAAAATG
TGAAGTCCTTTCAAGAAAATCTAATAAACATAATAATCATAGCCTGCTGACACTAAGGAA
AAAGGACCTCATTCACTCTTTCTTTTATGCAGCGGTTTACTGGTCCCTACTGATTTCCAA
ATTGGATCGCCATAGTAAATTATCTATGCTGGTACCTGTGAAAGTAAGCCCTGGGATCCA
TATTTGTTTTCTGTTCTGCTTAAATCAGCAAGAATGATAAATTTGATGGTGTGAAATTGG
AAGTGTCAAGGGCTCTCTTTGGTGATTGAGCAAAATAATGTCTCCACTTGTAATTTACTG
TGACCCTGTTTCACTGTATGTGCTTTGTATATCTAATATTTATTTCAATACAAATTAAAT
TGTTCCTTCATCTGTACTGTTATAGCTAAGATTTTATTGATGTAAAAATCAAATTGTGTA
ATAAAAAATCTCTCTGGATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCATTT
AGTTAGAATTTAGCCTTCCATTGTGCTTCATTGCCTTATTGTTAGAATAAGGTAAATTTG
AATTCTTCTATTGTCTTCACCTCATCTCAAGTAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1136-1295, - strand, RNAz p=0.955388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1136-1295, - strand, RNAz p=0.955388

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1594, gnl|bosTau2|chr6 (32953198-32954812)
               

               
               2-1594, gnl|Hg17|chr4 (41802061-41803645)
               

               
               2-1594, gnl|Mm7|chr5 (66645419-66647115)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1594, gnl|bosTau2|chr6 (32953198-32954812)
               

               
               2-1594, gnl|Hg17|chr4 (41802061-41803645)
               

               
               2-1594, gnl|Mm7|chr5 (66645419-66647115)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fce (0.543183)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	2-1594, gnl\|bosTau2\|chr6 (32953198-32954812)
	2-1594, gnl\|Hg17\|chr4 (41802061-41803645)
	2-1594, gnl\|Mm7\|chr5 (66645419-66647115)

	fce (0.543183)
	kid (0.518941)
	fhi (0.508733)
	mga (0.32041)
	spl (0.286369)
	ret (0.257467)
	cbl (0.229595)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	ton (0.1755)
	tbr (0.154178)
	ova (0.129132)
	tra (0.123092)
	clu (0.119646)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)