Ss1.1-Pig4-TMW8042P12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGGTTCTTGAGCCGCCGCGAATCTTCGAACGTGAGCGCGTTGTTATCCGCAGACTCT GAAAGGCATTCGAGGGAAGACGCGCCTGCTCCCGCCGTCGCAGTTTCCAGCGCGACTTGC TTATTCCACCCGTGGTTCTGTAGGCGCCCTCGTACACCATGGCCCTCGTGTCTGCTGATT CCCGCATAGCAGAACTGCTCACAGAGCTCCATCAGCTGATCAAGCAAACCCAGGAAGAGC GTTCGAGGAGTGAACACAATTTAGTGAACATCCAGAAGACCCACGAGCGGATGCAGACAG AGAACAAGATCTCTCCCTATTACCGGACAAAGCTGCGTGGCCTCTATACAACCGCCAAGG CCGACGCAGAGGCTGAGTGCAACATCCTCCGGAAAGCCCTAGATAAGATTGCGGAAATCA AGTCTCTGTTGGAAGAGAGGCGGATTGCGGCCAAGATCGCCGGCCTGTACAATGACTCGG AGCCCCCTCGGAAGACCATGCGCCGGGGGGTGTTGATGACCCTGCTGCAGCAGTCAGCCA TGACCTTGCCCCTGTGGATCGGGAAGCCTGGTGACAAGCCCCCACCCCTCTGTGGGGCCA TTCCAGCTTCTGGGGACTATGTGGCCAAACCTGGAGATAAGGTGGCTGCCCGAGTGAAGG CCGTGGACGGGGATGAGCAGTGGATCCTGGCCGAAGTGGTCAGTTACAGCCATGCCACCA ACAAGTATGAGGTAGATGACATTGACGAGGAAGGCAAAGAGAGACACACACTGAGCCGCC GGCGGATCATCCCACTGCCCCAGTGGAAGGCCAACCCGGAGACGGACCCCGAGGCCTTGT TCCAGAAGGAGCAGCTGGTGCTGGCCCTGTATCCCCAGACCACCTGCTTCTACCGTGCCC TGATCCACACACCCCCACAGCGGCCCCAGGATGACTATTCAGTCCTGTTTGAAGACACCT CCTATGCAGATGGTTACTCCCCCCCGCTCAATGTGGCCCAGCGGTACGTGGTGGCTTGTA AGGAGCCCAAGAAAAAGTGAAGCAGCCAGTCAGACTCTCAGTCGCCTGACACCCTAAATC GGGGGATGCAACACAAGATTCTGTGACCAAATAAATACTCTTCCCGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGGTTCTTGAGCCGCCGCGAATCTTCGAACGTGAGCGCGTTGTTATCCGCAGACTCT GAAAGGCATTCGAGGGAAGACGCGCCTGCTCCCGCCGTCGCAGTTTCCAGCGCGACTTGC TTATTCCACCCGTGGTTCTGTAGGCGCCCTCGTACACCATGGCCCTCGTGTCTGCTGATT CCCGCATAGCAGAACTGCTCACAGAGCTCCATCAGCTGATCAAGCAAACCCAGGAAGAGC GTTCGAGGAGTGAACACAATTTAGTGAACATCCAGAAGACCCACGAGCGGATGCAGACAG AGAACAAGATCTCTCCCTATTACCGGACAAAGCTGCGTGGCCTCTATACAACCGCCAAGG CCGACGCAGAGGCTGAGTGCAACATCCTCCGGAAAGCCCTAGATAAGATTGCGGAAATCA AGTCTCTGTTGGAAGAGAGGCGGATTGCGGCCAAGATCGCCGGCCTGTACAATGACTCGG AGCCCCCTCGGAAGACCATGCGCCGGGGGGTGTTGATGACCCTGCTGCAGCAGTCAGCCA TGACCTTGCCCCTGTGGATCGGGAAGCCTGGTGACAAGCCCCCACCCCTCTGTGGGGCCA TTCCAGCTTCTGGGGACTATGTGGCCAAACCTGGAGATAAGGTGGCTGCCCGAGTGAAGG CCGTGGACGGGGATGAGCAGTGGATCCTGGCCGAAGTGGTCAGTTACAGCCATGCCACCA ACAAGTATGAGGTAGATGACATTGACGAGGAAGGCAAAGAGAGACACACACTGAGCCGCC GGCGGATCATCCCACTGCCCCAGTGGAAGGCCAACCCGGAGACGGACCCCGAGGCCTTGT TCCAGAAGGAGCAGCTGGTGCTGGCCCTGTATCCCCAGACCACCTGCTTCTACCGTGCCC TGATCCACACACCCCCACAGCGGCCCCAGGATGACTATTCAGTCCTGTTTGAAGACACCT CCTATGCAGATGGTTACTCCCCCCCGCTCAATGTGGCCCAGCGGTACGTGGTGGCTTGTA AGGAGCCCAAGAAAAAGTGAAGCAGCCAGTCAGACTCTCAGTCGCCTGACACCCTAAATC GGGGGATGCAACACAAGATTCTGTGACCAAATAAATACTCTTCCCGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 17-144, gnl|bosTau2|chr25 (25042228-25042355) | |
| 17-144, gnl|Hg17|chr16 (28472799-28472924) | |
| 17-144, gnl|Mm7|chr7 (122745922-122746040) | |
| 568-733, gnl|bosTau2|chr25 (25070307-25070472) | |
| 568-733, gnl|Hg17|chr16 (28509108-28509272) | |
| 568-733, gnl|Mm7|chr7 (122768286-122768445) | |
| 920-1124, gnl|bosTau2|chr25 (25071913-25072113) | |
| 920-1124, gnl|canFam2|chr6 (21192325-21192192) | |
| 920-1124, gnl|danRer3|chr3 (8414220-8414101) | |
| 920-1124, gnl|dasNov1|scaffold_87285 (4158-4032) | |
| 920-1124, gnl|echTel1|scaffold_235142 (3370-3503) | |
| 920-1124, gnl|fr1|chrUn (326494948-326495075) | |
| 920-1124, gnl|galGal2|chrUn (41764477-41764603) | |
| 920-1124, gnl|hg17|chr16 (28510399-28510531) | |
| 920-1124, gnl|Hg17|chr16 (28510408-28510608) | |
| 920-1124, gnl|loxAfr1|scaffold_1209 (11070-11205) | |
| 920-1124, gnl|mm7|chr7 (122769118-122769247) | |
| 920-1124, gnl|Mm7|chr7 (122769126-122769331) | |
| 920-1124, gnl|monDom2|scaffold_5 (119564844-119564976) | |
| 920-1124, gnl|oryCun1|scaffold_189098 (4974-4855) | |
| 920-1124, gnl|panTro1|chr18 (29143175-29143043) | |
| 920-1124, gnl|rheMac2|chr20 (28229902-28229770) | |
| 920-1124, gnl|rn3|chr1 (185978775-185978904) | |
| 920-1124, gnl|tetNig1|chrUn_random (46169431-46169550) | |
| 920-1124, gnl|xenTro1|scaffold_1708 (45631-45763) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-144, gnl|bosTau2|chr25 (25042228-25042355) | |
| 17-144, gnl|Hg17|chr16 (28472799-28472924) | |
| 17-144, gnl|Mm7|chr7 (122745922-122746040) | |
| 568-733, gnl|bosTau2|chr25 (25070307-25070472) | |
| 568-733, gnl|Hg17|chr16 (28509108-28509272) | |
| 568-733, gnl|Mm7|chr7 (122768286-122768445) | |
| 920-1124, gnl|bosTau2|chr25 (25071913-25072113) | |
| 920-1124, gnl|canFam2|chr6 (21192325-21192192) | |
| 920-1124, gnl|danRer3|chr3 (8414220-8414101) | |
| 920-1124, gnl|dasNov1|scaffold_87285 (4158-4032) | |
| 920-1124, gnl|echTel1|scaffold_235142 (3370-3503) | |
| 920-1124, gnl|fr1|chrUn (326494948-326495075) | |
| 920-1124, gnl|galGal2|chrUn (41764477-41764603) | |
| 920-1124, gnl|hg17|chr16 (28510399-28510531) | |
| 920-1124, gnl|Hg17|chr16 (28510408-28510608) | |
| 920-1124, gnl|loxAfr1|scaffold_1209 (11070-11205) | |
| 920-1124, gnl|mm7|chr7 (122769118-122769247) | |
| 920-1124, gnl|Mm7|chr7 (122769126-122769331) | |
| 920-1124, gnl|monDom2|scaffold_5 (119564844-119564976) | |
| 920-1124, gnl|oryCun1|scaffold_189098 (4974-4855) | |
| 920-1124, gnl|panTro1|chr18 (29143175-29143043) | |
| 920-1124, gnl|rheMac2|chr20 (28229902-28229770) | |
| 920-1124, gnl|rn3|chr1 (185978775-185978904) | |
| 920-1124, gnl|tetNig1|chrUn_random (46169431-46169550) | |
| 920-1124, gnl|xenTro1|scaffold_1708 (45631-45763) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ece (0.229305) | |
| eye (0.170503) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| eye (0.170503) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) |