Non-Coding RNA Search

Ss1.1-Pig4-TMW8042P19.3

Sequence:


               
               GAAAAACGCGCTCATCGAAATTTTACCAGCAGTGACAGAGGTGAGAGGAGGAAAGATTAG
GCAACATCTGGGTTTTGATTTGGAATGTGTCCAAGACATTGTTGAAGGCTGTCTGGGAGG
CAGTGATGGCACAGAGAGTCTTAGGCAACCTCATCCAAAAGCATGAAGACCTCCTGTGAG
GGGAGGAATTGTTGAAATGCCAGCGTCTTTTTCCTCCCCACCCCCTTTTTTTCTCTAGAA
TTCTGTAAAAATGCAAAGAAAATTGAGTGGTACTTGAGAATTGGGGGTGAGGGTTACCGC
AGGTGAGAAACACACTTTTAGATTTCAGTTCCATGCCACAAATCCACACAATGCCATTTT
TCAACTGTACAAAAGAATCTGCTTATGAATTTGACATGACCTTAATGGTAGCATCAGGCC
GGATTTTTCACATGTTAATATTTTTCCACATTTGTCCTTGAATCTGAATGACTTCATACA
GTACTGTAAATTAAACTTATATTGAGTTTGATGTCAATTCTTCTGAAAAGAGCTTCTGCA
TGTAACGCACAAAGAACACAGCAGAGTATAACATTTGCAGGACCAACTTTGCAACCAACA
GAAGATGTCATTTCTCATTTGCCATTTTATATATTAGTTTTACCAGCAACTTCTAAATTT
GTATATTATTTGTAAGGAAAAGAAGGAAAACCTAAGACTTGTCTAATAACTTAGCGGAGA
ATGTGTGTGTTGGGTTTAGGATGGATAGCGAAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACGCGCTCATCGAAATTTTACCAGCAGTGACAGAGGTGAGAGGAGGAAAGATTAG
GCAACATCTGGGTTTTGATTTGGAATGTGTCCAAGACATTGTTGAAGGCTGTCTGGGAGG
CAGTGATGGCACAGAGAGTCTTAGGCAACCTCATCCAAAAGCATGAAGACCTCCTGTGAG
GGGAGGAATTGTTGAAATGCCAGCGTCTTTTTCCTCCCCACCCCCTTTTTTTCTCTAGAA
TTCTGTAAAAATGCAAAGAAAATTGAGTGGTACTTGAGAATTGGGGGTGAGGGTTACCGC
AGGTGAGAAACACACTTTTAGATTTCAGTTCCATGCCACAAATCCACACAATGCCATTTT
TCAACTGTACAAAAGAATCTGCTTATGAATTTGACATGACCTTAATGGTAGCATCAGGCC
GGATTTTTCACATGTTAATATTTTTCCACATTTGTCCTTGAATCTGAATGACTTCATACA
GTACTGTAAATTAAACTTATATTGAGTTTGATGTCAATTCTTCTGAAAAGAGCTTCTGCA
TGTAACGCACAAAGAACACAGCAGAGTATAACATTTGCAGGACCAACTTTGCAACCAACA
GAAGATGTCATTTCTCATTTGCCATTTTATATATTAGTTTTACCAGCAACTTCTAAATTT
GTATATTATTTGTAAGGAAAAGAAGGAAAACCTAAGACTTGTCTAATAACTTAGCGGAGA
ATGTGTGTGTTGGGTTTAGGATGGATAGCGAAGTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr22 (9222565-9223324)
               

               
               1-756, gnl|Hg17|chr3 (38508045-38508804)
               

               
               1-756, gnl|Mm7|chr9 (119120816-119121516)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr22 (9222565-9223324)
               

               
               1-756, gnl|Hg17|chr3 (38508045-38508804)
               

               
               1-756, gnl|Mm7|chr9 (119120816-119121516)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sme (0.305437)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               kid (0.129735)

	1-756, gnl\|bosTau2\|chr22 (9222565-9223324)
	1-756, gnl\|Hg17\|chr3 (38508045-38508804)
	1-756, gnl\|Mm7\|chr9 (119120816-119121516)