Non-Coding RNA Search

Ss1.1-Pig4-TMW8042P22.5

Sequence:


               
               TGGCGTCACAATGATGACTCCAGGCCTGGCACTGGCCTCACACTTGTGCTCTGAGCTCCA
GACCCACTTCACCCTGTGCCAGGGCCACAAGTGGAAGAAACTCTTTCCAGCCACAGGGCC
TTTGCGTGTACTCTTTCTACCTCTGGAGGACTCTCTCCCCACCCCTCATCTTTCATCCTC
TGATTTTCAGGTTCAATGTCACTTCCTTCAGGAGGCTCTAAACAATCACGTTCCCTTGGT
TTTGCATTCACTCATTATCCTGTGATTTTCCTTTGTAGCATTAATTATTTATATTATTAT
TCATTCAGTGTATTATTTTTCCTACTAGCCTCTGGGCACCATGAAGGCTGGACGAGGTCT
GGTCTGGTCACTGCTGGATCACGCAGCACTTAATAACCCAGAGTAAGGGAGTGGTAGCCA
GAAACACCCTCCCTTCCCAGGCTCAATGAGGACCCGCTGCCCCAGTTGTTGTCACTCCCG
TGTCCAGCTCCAGGTGGCTGCAGGGCGCAGAGGCTTAGGATTGGGATTCTGGGCACTCTG
GCTCCTGCCGCTTTGATAAATGGGGGAAATTCAGAATTAATTATTGACTGCTACACCGAA
CCAGCCTGATCTGGACAGATAAAGAGTGTCCTCACTGCTGCGTCTGTCCAATAGTTCTAG
GGAGTTTATTAGAGGTCGGAAGGCAGCTGGCTGAGGGGACAGGTCCAGAAAGCACTGGAG
CCAGATGGAGCTGGGTGCAAAGACTGGCTCTGCTGGGCCACTTTGGGCCATCGACTTTCC
CTCTCTGAGCCTCGGTTTTCTCATTTGGACAAAGGGAAGAGAAAACATCCTTGTCTGTTG
GGACAAATTTGTTGGGGGAATCACTTTGAGTTAATAGAGTGTGCACACAGTGGGTATCCA
ATAAATGTTGCTGAATTGGTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGTCACAATGATGACTCCAGGCCTGGCACTGGCCTCACACTTGTGCTCTGAGCTCCA
GACCCACTTCACCCTGTGCCAGGGCCACAAGTGGAAGAAACTCTTTCCAGCCACAGGGCC
TTTGCGTGTACTCTTTCTACCTCTGGAGGACTCTCTCCCCACCCCTCATCTTTCATCCTC
TGATTTTCAGGTTCAATGTCACTTCCTTCAGGAGGCTCTAAACAATCACGTTCCCTTGGT
TTTGCATTCACTCATTATCCTGTGATTTTCCTTTGTAGCATTAATTATTTATATTATTAT
TCATTCAGTGTATTATTTTTCCTACTAGCCTCTGGGCACCATGAAGGCTGGACGAGGTCT
GGTCTGGTCACTGCTGGATCACGCAGCACTTAATAACCCAGAGTAAGGGAGTGGTAGCCA
GAAACACCCTCCCTTCCCAGGCTCAATGAGGACCCGCTGCCCCAGTTGTTGTCACTCCCG
TGTCCAGCTCCAGGTGGCTGCAGGGCGCAGAGGCTTAGGATTGGGATTCTGGGCACTCTG
GCTCCTGCCGCTTTGATAAATGGGGGAAATTCAGAATTAATTATTGACTGCTACACCGAA
CCAGCCTGATCTGGACAGATAAAGAGTGTCCTCACTGCTGCGTCTGTCCAATAGTTCTAG
GGAGTTTATTAGAGGTCGGAAGGCAGCTGGCTGAGGGGACAGGTCCAGAAAGCACTGGAG
CCAGATGGAGCTGGGTGCAAAGACTGGCTCTGCTGGGCCACTTTGGGCCATCGACTTTCC
CTCTCTGAGCCTCGGTTTTCTCATTTGGACAAAGGGAAGAGAAAACATCCTTGTCTGTTG
GGACAAATTTGTTGGGGGAATCACTTTGAGTTAATAGAGTGTGCACACAGTGGGTATCCA
ATAAATGTTGCTGAATTGGTGCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-113, - strand, RNAz p=0.816022
               

               
               151-240, - strand, RNAz p=0.978209

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.816022
               

               
               151-240, - strand, RNAz p=0.978209

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-336, gnl|bosTau2|chr9 (60052730-60053065)
               

               
               1-336, gnl|canFam2|chr20 (57383354-57383024)
               

               
               1-336, gnl|hg17|chr19 (5505246-5505605)
               

               
               1-336, gnl|Hg17|chr19 (5506053-5505405)
               

               
               1-336, gnl|panTro1|chr20 (5830820-5831179)
               

               
               1-336, gnl|rheMac2|chr19 (5459404-5459763)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr9 (60052730-60053065)
               

               
               1-336, gnl|canFam2|chr20 (57383354-57383024)
               

               
               1-336, gnl|hg17|chr19 (5505246-5505605)
               

               
               1-336, gnl|Hg17|chr19 (5506053-5505405)
               

               
               1-336, gnl|panTro1|chr20 (5830820-5831179)
               

               
               1-336, gnl|rheMac2|chr19 (5459404-5459763)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	1-113, - strand, RNAz p=0.816022
	151-240, - strand, RNAz p=0.978209

	1-336, gnl\|bosTau2\|chr9 (60052730-60053065)
	1-336, gnl\|canFam2\|chr20 (57383354-57383024)
	1-336, gnl\|hg17\|chr19 (5505246-5505605)
	1-336, gnl\|Hg17\|chr19 (5506053-5505405)
	1-336, gnl\|panTro1\|chr20 (5830820-5831179)
	1-336, gnl\|rheMac2\|chr19 (5459404-5459763)