Non-Coding RNA Search

Ss1.1-Pig4-TMW8043A01.5

Sequence:


               
               TCACTCTAGCATAGTATCTAACACATAGTAGAAGCTTAATAAATACGTGTTAGTGTTGAA
CACATTTCTAGACTCGGTATACAATTATTTAATGGGAAATTTAAATGATACCTTTGAAAG
GGAGCTGACTTGTTCGTTAATACCTAAAGGCATGTTGCTGAGATGTTCAGCAATTTTTAG
AGGTAAAGGTGGTTTACGGGCAATTCTTGGCTAAATGACAAGCTAATGGAGAACAAGACT
CTTTCTGAATAAAGACAGATGTTTCATCTAAGTGGAAAAAGGGTCTGGCAGTTAAATAAG
TAAGCTATTTAAAATCAGCTCCTTTCTTGGTATTGTTAAATGTTGTGGTGTGACATAATA
CGTAATGTATGGTGTGGTCTGTGGAGAGTGTTTGGATTTTTGACACACATTATTCCCTCC
CCTGGGCAAATAGTCAGCTGGAGGCAGCCACTGAGGCTAAGATCCAACAAGCAGAAAAAC
TTCAAAGACGTTATTTTACTCAGCTTGATAGATTTTTACAAAAAATTCGAAGAGAGGCAA
TATTTGAGATTCAAGTAAATGTCATCTGTATGATGGTAAATCTTAAATACTCTAACATTT
CGTGAAAAATTCTGCTTTTCAGCATCAATGTGGTCATGTGGAAAGGTTTGAGAATTAAGA
TGCGTCCAGTCTTTGCTCTGTTGTTAAAATTGATGCATAATCTTGGGCAAGTCGTTTAAT
CTTCCTGAGCATCAATTTTCTATCCGGCCAGACTGCTTTATGTATAGTTTCCCAAACTTG
ACACTTTCCTTGTTGATCAGGCCAAGAAAGTTTTCTTCTATTTTCAGTTAACAAAAAGTA
ATTATTAAGAATGTTCGTTGAATTTTATCATGTTTTCCTGTATCTGTATAGACTTTCATC
TTGTATCTGCTAATGTGGTGGTTCATATTAATAGGCTTAAAATACATATATTGGGTTAAT
CTTGCCTTCCAGGAATAAATCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTCTAGCATAGTATCTAACACATAGTAGAAGCTTAATAAATACGTGTTAGTGTTGAA
CACATTTCTAGACTCGGTATACAATTATTTAATGGGAAATTTAAATGATACCTTTGAAAG
GGAGCTGACTTGTTCGTTAATACCTAAAGGCATGTTGCTGAGATGTTCAGCAATTTTTAG
AGGTAAAGGTGGTTTACGGGCAATTCTTGGCTAAATGACAAGCTAATGGAGAACAAGACT
CTTTCTGAATAAAGACAGATGTTTCATCTAAGTGGAAAAAGGGTCTGGCAGTTAAATAAG
TAAGCTATTTAAAATCAGCTCCTTTCTTGGTATTGTTAAATGTTGTGGTGTGACATAATA
CGTAATGTATGGTGTGGTCTGTGGAGAGTGTTTGGATTTTTGACACACATTATTCCCTCC
CCTGGGCAAATAGTCAGCTGGAGGCAGCCACTGAGGCTAAGATCCAACAAGCAGAAAAAC
TTCAAAGACGTTATTTTACTCAGCTTGATAGATTTTTACAAAAAATTCGAAGAGAGGCAA
TATTTGAGATTCAAGTAAATGTCATCTGTATGATGGTAAATCTTAAATACTCTAACATTT
CGTGAAAAATTCTGCTTTTCAGCATCAATGTGGTCATGTGGAAAGGTTTGAGAATTAAGA
TGCGTCCAGTCTTTGCTCTGTTGTTAAAATTGATGCATAATCTTGGGCAAGTCGTTTAAT
CTTCCTGAGCATCAATTTTCTATCCGGCCAGACTGCTTTATGTATAGTTTCCCAAACTTG
ACACTTTCCTTGTTGATCAGGCCAAGAAAGTTTTCTTCTATTTTCAGTTAACAAAAAGTA
ATTATTAAGAATGTTCGTTGAATTTTATCATGTTTTCCTGTATCTGTATAGACTTTCATC
TTGTATCTGCTAATGTGGTGGTTCATATTAATAGGCTTAAAATACATATATTGGGTTAAT
CTTGCCTTCCAGGAATAAATCTAA

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               7-982, gnl|bosTau2|chr2 (21939252-21938254)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-982, gnl|bosTau2|chr2 (21939252-21938254)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               nca (0.136874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nca (0.136874)