Non-Coding RNA Search

Ss1.1-Pig4-TMW8043A03.3

Sequence:


               
               TTTTTTTATGCTTCTTGTATATTTTTCCCTTTGTTTGTTGCCTGTTCAGGCTGAAGAACA
GAATTGGCCAGAGCCTGGTTCTCCGGTTTGTGGTTTTCCTCCTGGGTGGAAGGGCTCTTG
GCCTCTGTAGGGACAGAAGCTCGTGCTGGAGTGGCCAGTAGAGGCGTGCGGGGCAGCCAT
TCTCAATTGGGGCTGTGTCAGGCTGAATTTATTTAAAAGCAGCAAAATGTTTTGGTTAAG
GAAATTCTTACTTTGCTTTAAATGTAAATCTTCTCAGTGTTGTAAATGAAGTTGAGTCTC
CTCCCTCGTCCTCTGTGGGTTGAGGTCTTGCTGGCTCTGCAGGGGCCCTCCCACCACTCA
CCTGCTCTCCAGGCCCCAGCAGCTCACGCAGACACCCCTGCTCCGGCGGAAGTTGTTAGT
GATGACGAGGCAGAGGCCCAAACAGAGCCGGCCCTGCTGCCCCAGAGCTGCTCTTGGCCG
AGACCCCGGGCCTCCGGCGCCTGCTCTGGCCTGCTCTGGGGCTGGCTGCAGTGGTCCTGA
CCTCTTGCCAGGAGCCGCCTGAGGGTTGCTCCTTTCAAACACACGTGTGCGATTGTGCGG
AGCAGTTAGACTTGCCGTGTTGGGGCGGTTTTAGCAGTTGTTTCTAGCTGGAGGGACTGG
TGTCCTTCCGAGCATGGAGGTTTTGGGGTATGGAAAATTGTTGTGGTGTGTGGTAGGGGT
TTTGTTTCTTTTGTTCTGAGCTTTCATTTTTTTCCTTAGGCCTTCTGGCTTTCCCCTGCC
CTTTCCTTTCTCTTCCGTCGGCCAGCTGGGGCCTTCTCCCTGTCGTCCCCCCTGGAGACG
CCACCCCTCTGTCCGCCTGCAGCCTGTGGACTGGGTTGGTGCCGCCTCTGGCTCAGGGGC
GTGGGAACTGGGGAAGGGGCTTTAAGAAACATTAATGAAAGGAAACAAGTGAAGTCGTTT
GCAGTTTCCACCCACTCACATCTTCGAAGGCCGCAAGGTTTTGCTGGTCTGGGTTCATTA
GGAATGTCCTTGCCAGCCAGGGCCAAGCCCCGGGCCCACTGAGACCAGAGGCCCTCCCAG
TCCCCCGGCTGCCGTCATGCAGGGGCCTCGTCTAAGAGAGGGGGCTGCAGAAGAAAGCTG
GGGCAGCCACCTCCAAGAAGGCCTCTCGGGGGCCAGAGCTCCTTTGCCAGCGTGGATTCC
TCAAGTCAGGACTGCGTAACTAAAGCAGTTGCAGTTTTATTTTTTTTACAGCTTTTTTCC
CAAAAATGATTTGTAGTTGTGTGTGCAGCACTTTGCCCTGATATGTGTGCTCTACAATAA
AAACCAAATCTAATATATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTATGCTTCTTGTATATTTTTCCCTTTGTTTGTTGCCTGTTCAGGCTGAAGAACA
GAATTGGCCAGAGCCTGGTTCTCCGGTTTGTGGTTTTCCTCCTGGGTGGAAGGGCTCTTG
GCCTCTGTAGGGACAGAAGCTCGTGCTGGAGTGGCCAGTAGAGGCGTGCGGGGCAGCCAT
TCTCAATTGGGGCTGTGTCAGGCTGAATTTATTTAAAAGCAGCAAAATGTTTTGGTTAAG
GAAATTCTTACTTTGCTTTAAATGTAAATCTTCTCAGTGTTGTAAATGAAGTTGAGTCTC
CTCCCTCGTCCTCTGTGGGTTGAGGTCTTGCTGGCTCTGCAGGGGCCCTCCCACCACTCA
CCTGCTCTCCAGGCCCCAGCAGCTCACGCAGACACCCCTGCTCCGGCGGAAGTTGTTAGT
GATGACGAGGCAGAGGCCCAAACAGAGCCGGCCCTGCTGCCCCAGAGCTGCTCTTGGCCG
AGACCCCGGGCCTCCGGCGCCTGCTCTGGCCTGCTCTGGGGCTGGCTGCAGTGGTCCTGA
CCTCTTGCCAGGAGCCGCCTGAGGGTTGCTCCTTTCAAACACACGTGTGCGATTGTGCGG
AGCAGTTAGACTTGCCGTGTTGGGGCGGTTTTAGCAGTTGTTTCTAGCTGGAGGGACTGG
TGTCCTTCCGAGCATGGAGGTTTTGGGGTATGGAAAATTGTTGTGGTGTGTGGTAGGGGT
TTTGTTTCTTTTGTTCTGAGCTTTCATTTTTTTCCTTAGGCCTTCTGGCTTTCCCCTGCC
CTTTCCTTTCTCTTCCGTCGGCCAGCTGGGGCCTTCTCCCTGTCGTCCCCCCTGGAGACG
CCACCCCTCTGTCCGCCTGCAGCCTGTGGACTGGGTTGGTGCCGCCTCTGGCTCAGGGGC
GTGGGAACTGGGGAAGGGGCTTTAAGAAACATTAATGAAAGGAAACAAGTGAAGTCGTTT
GCAGTTTCCACCCACTCACATCTTCGAAGGCCGCAAGGTTTTGCTGGTCTGGGTTCATTA
GGAATGTCCTTGCCAGCCAGGGCCAAGCCCCGGGCCCACTGAGACCAGAGGCCCTCCCAG
TCCCCCGGCTGCCGTCATGCAGGGGCCTCGTCTAAGAGAGGGGGCTGCAGAAGAAAGCTG
GGGCAGCCACCTCCAAGAAGGCCTCTCGGGGGCCAGAGCTCCTTTGCCAGCGTGGATTCC
TCAAGTCAGGACTGCGTAACTAAAGCAGTTGCAGTTTTATTTTTTTTACAGCTTTTTTCC
CAAAAATGATTTGTAGTTGTGTGTGCAGCACTTTGCCCTGATATGTGTGCTCTACAATAA
AAACCAAATCTAATATATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-518, gnl|bosTau2|chr19 (26590426-26590931)
               

               
               4-518, gnl|Hg17|chr17 (18052537-18053099)
               

               
               4-518, gnl|Mm7|chr11 (60636048-60636578)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-518, gnl|bosTau2|chr19 (26590426-26590931)
               

               
               4-518, gnl|Hg17|chr17 (18052537-18053099)
               

               
               4-518, gnl|Mm7|chr11 (60636048-60636578)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               eye (0.511509)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               jej (0.197844)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               cov (0.396458)
               

               
               nep (0.36785)
               

               
               cga (0.279096)
               

               
               jej (0.197844)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	4-518, gnl\|bosTau2\|chr19 (26590426-26590931)
	4-518, gnl\|Hg17\|chr17 (18052537-18053099)
	4-518, gnl\|Mm7\|chr11 (60636048-60636578)

	eye (0.511509)
	cov (0.396458)
	nep (0.36785)
	cga (0.279096)
	jej (0.197844)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	pty (0.142714)
	hlv (0.139256)
	ute (0.132784)
	ese (0.126502)
	clu (0.119646)
	ecc (0.115035)
	ldo (0.0970026)