Non-Coding RNA Search

Ss1.1-Pig4-TMW8043A15.3.5

Sequence:


               
               CGTATTGGACTACTGCCTAGTTAAAATCCATGAAAATCTCTATAACTTCCAAAGTTTTTT
AATTCTAATTTTTAAGTTCAAAGAGAAAGTGGATAGAATGAAGATCTTCAAGAATTCTTT
AATAATCCCTTTAATAATCTGGCAGGCAACACAGTCCTAGAATTCAGGCTTCCTTTTTGG
TTTTATTACTATTAAATGACAGTGTCATATAAATGGAAACATTTTCCCTCAAAACATTAA
TTCAGAACATATTCCTTATATTAAGGATTATGTAACCACGTTTTTTGTATATTCCTTGTG
TGTAACTTTCCTGTTGGTACGTGATTCCTTTTCCTTTAATTTTATTATCTGCTGGTTTGG
GGGCCAATAGATTTGTGAATATTTTGTGGATGTGTCTATGTATAGGTGTGTATATATATA
TACATATATATATATATATATTTTCCAGCTAATACCTCAAATGTGTGATTGTTTAATATA
TACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATTTTCTTATTTCTAA
CTTGGAAAATCAGTCCACAGAATTTCATTGGTGTGAATTTTTTCTGTTCATCTCTTACAT
ATTTTAAAACAAGATTATTATCATAAGGCCCATACTTCAAGTATAATTGTACCTTTCTAT
ATCTAGCAGTCTGGAAATTTGTAGGGGGTAAGAAGTGTTTCTTGAAATGTCTGAGTTTAG
TAAATTATTATTAAAAATTGGAATTACTGGTTGCCACGCTGTCTGGTAACTGCATAGCAG
ATGACATCGAGCATGACTGTGAATGTGTTTCATTCATTTCAGCACAGGAGTTGGGACATT
CTCATCTGATATTCTGCTCTGCCATTGAAGAGCACCACTAAAATAGAGATGTTTTAGTGA
CATTGGAGTTATCTTAAGCATCAGTTTTTTAAGTGAATTGTTTTGGCTTCTATATGGATG
GATGCCTATATCAATGAGAAGAAAGAAACTCACAATAAATGATATTTTTGTAATTTATTT
GTATTAAGAAATGCTCCTTTTTTGTTTTTTGTTTTTTTCAATTTTTGGATTGCTACATAA
GACTTTCCCATTTAAAGTTTAGATCATGTGTTTTTAAAAGCTGCAGGTAATTTTCAAGGT
GTGATGGAATTTTAATGGAAGCCTTGTATAAGTTAAATGAAGTGAACCTGATAAAGGAGA
TCTTTATTTGTCTATAGTGCATTCAAGATTATACAATTAGATTTAAAATGAAATGTCTGA
TTTGTAATATATTTAATGTTATATCAGACTTATATAAAATTTTCTGTGTGAGAACTCTGT
TAAAGAAAATGCATTTGATTTTTAATGAATGTTTTACTGAATGGTTTATGATGATTTTTT
TTTGTCTTTCCGTCTCTGCAGTTTATCTCAATATATGAATAAAAAGAAGGTCTGTTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTATTGGACTACTGCCTAGTTAAAATCCATGAAAATCTCTATAACTTCCAAAGTTTTTT
AATTCTAATTTTTAAGTTCAAAGAGAAAGTGGATAGAATGAAGATCTTCAAGAATTCTTT
AATAATCCCTTTAATAATCTGGCAGGCAACACAGTCCTAGAATTCAGGCTTCCTTTTTGG
TTTTATTACTATTAAATGACAGTGTCATATAAATGGAAACATTTTCCCTCAAAACATTAA
TTCAGAACATATTCCTTATATTAAGGATTATGTAACCACGTTTTTTGTATATTCCTTGTG
TGTAACTTTCCTGTTGGTACGTGATTCCTTTTCCTTTAATTTTATTATCTGCTGGTTTGG
GGGCCAATAGATTTGTGAATATTTTGTGGATGTGTCTATGTATAGGTGTGTATATATATA
TACATATATATATATATATATTTTCCAGCTAATACCTCAAATGTGTGATTGTTTAATATA
TACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATTTTCTTATTTCTAA
CTTGGAAAATCAGTCCACAGAATTTCATTGGTGTGAATTTTTTCTGTTCATCTCTTACAT
ATTTTAAAACAAGATTATTATCATAAGGCCCATACTTCAAGTATAATTGTACCTTTCTAT
ATCTAGCAGTCTGGAAATTTGTAGGGGGTAAGAAGTGTTTCTTGAAATGTCTGAGTTTAG
TAAATTATTATTAAAAATTGGAATTACTGGTTGCCACGCTGTCTGGTAACTGCATAGCAG
ATGACATCGAGCATGACTGTGAATGTGTTTCATTCATTTCAGCACAGGAGTTGGGACATT
CTCATCTGATATTCTGCTCTGCCATTGAAGAGCACCACTAAAATAGAGATGTTTTAGTGA
CATTGGAGTTATCTTAAGCATCAGTTTTTTAAGTGAATTGTTTTGGCTTCTATATGGATG
GATGCCTATATCAATGAGAAGAAAGAAACTCACAATAAATGATATTTTTGTAATTTATTT
GTATTAAGAAATGCTCCTTTTTTGTTTTTTGTTTTTTTCAATTTTTGGATTGCTACATAA
GACTTTCCCATTTAAAGTTTAGATCATGTGTTTTTAAAAGCTGCAGGTAATTTTCAAGGT
GTGATGGAATTTTAATGGAAGCCTTGTATAAGTTAAATGAAGTGAACCTGATAAAGGAGA
TCTTTATTTGTCTATAGTGCATTCAAGATTATACAATTAGATTTAAAATGAAATGTCTGA
TTTGTAATATATTTAATGTTATATCAGACTTATATAAAATTTTCTGTGTGAGAACTCTGT
TAAAGAAAATGCATTTGATTTTTAATGAATGTTTTACTGAATGGTTTATGATGATTTTTT
TTTGTCTTTCCGTCTCTGCAGTTTATCTCAATATATGAATAAAAAGAAGGTCTGTTCTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               172-288, - strand, RNAz p=0.8845
               

               
               407-521, + strand, RNAz p=0.63025

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-288, - strand, RNAz p=0.8845
               

               
               407-521, + strand, RNAz p=0.63025

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               54-1440, gnl|bosTau2|chr6 (9406318-9407692)
               

               
               54-1440, gnl|canFam2|chr32 (24763895-24764812)
               

               
               54-1440, gnl|dasNov1|scaffold_40824 (458-1467)
               

               
               54-1440, gnl|echTel1|scaffold_309047 (47665-46734)
               

               
               54-1440, gnl|hg17|chr4 (101174557-101175431)
               

               
               54-1440, gnl|Hg17|chr4 (101175901-101174591)
               

               
               54-1440, gnl|loxAfr1|scaffold_80695 (492-1377)
               

               
               54-1440, gnl|mm7|chr3 (137724830-137723960)
               

               
               54-1440, gnl|Mm7|chr3 (137723526-137724794)
               

               
               54-1440, gnl|monDom2|scaffold_37 (12829353-12828382)
               

               
               54-1440, gnl|panTro1|chr3 (117552078-117552954)
               

               
               54-1440, gnl|rheMac2|chr5 (92853772-92854655)
               

               
               54-1440, gnl|rn3|chr2 (235393488-235392626)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-1440, gnl|bosTau2|chr6 (9406318-9407692)
               

               
               54-1440, gnl|canFam2|chr32 (24763895-24764812)
               

               
               54-1440, gnl|dasNov1|scaffold_40824 (458-1467)
               

               
               54-1440, gnl|echTel1|scaffold_309047 (47665-46734)
               

               
               54-1440, gnl|hg17|chr4 (101174557-101175431)
               

               
               54-1440, gnl|Hg17|chr4 (101175901-101174591)
               

               
               54-1440, gnl|loxAfr1|scaffold_80695 (492-1377)
               

               
               54-1440, gnl|mm7|chr3 (137724830-137723960)
               

               
               54-1440, gnl|Mm7|chr3 (137723526-137724794)
               

               
               54-1440, gnl|monDom2|scaffold_37 (12829353-12828382)
               

               
               54-1440, gnl|panTro1|chr3 (117552078-117552954)
               

               
               54-1440, gnl|rheMac2|chr5 (92853772-92854655)
               

               
               54-1440, gnl|rn3|chr2 (235393488-235392626)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	172-288, - strand, RNAz p=0.8845
	407-521, + strand, RNAz p=0.63025

	54-1440, gnl\|bosTau2\|chr6 (9406318-9407692)
	54-1440, gnl\|canFam2\|chr32 (24763895-24764812)
	54-1440, gnl\|dasNov1\|scaffold_40824 (458-1467)
	54-1440, gnl\|echTel1\|scaffold_309047 (47665-46734)
	54-1440, gnl\|hg17\|chr4 (101174557-101175431)
	54-1440, gnl\|Hg17\|chr4 (101175901-101174591)
	54-1440, gnl\|loxAfr1\|scaffold_80695 (492-1377)
	54-1440, gnl\|mm7\|chr3 (137724830-137723960)
	54-1440, gnl\|Mm7\|chr3 (137723526-137724794)
	54-1440, gnl\|monDom2\|scaffold_37 (12829353-12828382)
	54-1440, gnl\|panTro1\|chr3 (117552078-117552954)
	54-1440, gnl\|rheMac2\|chr5 (92853772-92854655)
	54-1440, gnl\|rn3\|chr2 (235393488-235392626)

	fco (0.314416)
	ret (0.257467)
	sug (0.254582)
	tra (0.246184)
	cbe (0.239234)
	gul (0.177588)
	fbs (0.175346)
	eye (0.170503)
	lin (0.145603)
	eru (0.120048)
	jej (0.0989218)