Ss1.1-Pig4-TMW8043A15.3.5
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CGTATTGGACTACTGCCTAGTTAAAATCCATGAAAATCTCTATAACTTCCAAAGTTTTTT
AATTCTAATTTTTAAGTTCAAAGAGAAAGTGGATAGAATGAAGATCTTCAAGAATTCTTT
AATAATCCCTTTAATAATCTGGCAGGCAACACAGTCCTAGAATTCAGGCTTCCTTTTTGG
TTTTATTACTATTAAATGACAGTGTCATATAAATGGAAACATTTTCCCTCAAAACATTAA
TTCAGAACATATTCCTTATATTAAGGATTATGTAACCACGTTTTTTGTATATTCCTTGTG
TGTAACTTTCCTGTTGGTACGTGATTCCTTTTCCTTTAATTTTATTATCTGCTGGTTTGG
GGGCCAATAGATTTGTGAATATTTTGTGGATGTGTCTATGTATAGGTGTGTATATATATA
TACATATATATATATATATATTTTCCAGCTAATACCTCAAATGTGTGATTGTTTAATATA
TACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATTTTCTTATTTCTAA
CTTGGAAAATCAGTCCACAGAATTTCATTGGTGTGAATTTTTTCTGTTCATCTCTTACAT
ATTTTAAAACAAGATTATTATCATAAGGCCCATACTTCAAGTATAATTGTACCTTTCTAT
ATCTAGCAGTCTGGAAATTTGTAGGGGGTAAGAAGTGTTTCTTGAAATGTCTGAGTTTAG
TAAATTATTATTAAAAATTGGAATTACTGGTTGCCACGCTGTCTGGTAACTGCATAGCAG
ATGACATCGAGCATGACTGTGAATGTGTTTCATTCATTTCAGCACAGGAGTTGGGACATT
CTCATCTGATATTCTGCTCTGCCATTGAAGAGCACCACTAAAATAGAGATGTTTTAGTGA
CATTGGAGTTATCTTAAGCATCAGTTTTTTAAGTGAATTGTTTTGGCTTCTATATGGATG
GATGCCTATATCAATGAGAAGAAAGAAACTCACAATAAATGATATTTTTGTAATTTATTT
GTATTAAGAAATGCTCCTTTTTTGTTTTTTGTTTTTTTCAATTTTTGGATTGCTACATAA
GACTTTCCCATTTAAAGTTTAGATCATGTGTTTTTAAAAGCTGCAGGTAATTTTCAAGGT
GTGATGGAATTTTAATGGAAGCCTTGTATAAGTTAAATGAAGTGAACCTGATAAAGGAGA
TCTTTATTTGTCTATAGTGCATTCAAGATTATACAATTAGATTTAAAATGAAATGTCTGA
TTTGTAATATATTTAATGTTATATCAGACTTATATAAAATTTTCTGTGTGAGAACTCTGT
TAAAGAAAATGCATTTGATTTTTAATGAATGTTTTACTGAATGGTTTATGATGATTTTTT
TTTGTCTTTCCGTCTCTGCAGTTTATCTCAATATATGAATAAAAAGAAGGTCTGTTCTCA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGTATTGGACTACTGCCTAGTTAAAATCCATGAAAATCTCTATAACTTCCAAAGTTTTTT
AATTCTAATTTTTAAGTTCAAAGAGAAAGTGGATAGAATGAAGATCTTCAAGAATTCTTT
AATAATCCCTTTAATAATCTGGCAGGCAACACAGTCCTAGAATTCAGGCTTCCTTTTTGG
TTTTATTACTATTAAATGACAGTGTCATATAAATGGAAACATTTTCCCTCAAAACATTAA
TTCAGAACATATTCCTTATATTAAGGATTATGTAACCACGTTTTTTGTATATTCCTTGTG
TGTAACTTTCCTGTTGGTACGTGATTCCTTTTCCTTTAATTTTATTATCTGCTGGTTTGG
GGGCCAATAGATTTGTGAATATTTTGTGGATGTGTCTATGTATAGGTGTGTATATATATA
TACATATATATATATATATATTTTCCAGCTAATACCTCAAATGTGTGATTGTTTAATATA
TACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATTTTCTTATTTCTAA
CTTGGAAAATCAGTCCACAGAATTTCATTGGTGTGAATTTTTTCTGTTCATCTCTTACAT
ATTTTAAAACAAGATTATTATCATAAGGCCCATACTTCAAGTATAATTGTACCTTTCTAT
ATCTAGCAGTCTGGAAATTTGTAGGGGGTAAGAAGTGTTTCTTGAAATGTCTGAGTTTAG
TAAATTATTATTAAAAATTGGAATTACTGGTTGCCACGCTGTCTGGTAACTGCATAGCAG
ATGACATCGAGCATGACTGTGAATGTGTTTCATTCATTTCAGCACAGGAGTTGGGACATT
CTCATCTGATATTCTGCTCTGCCATTGAAGAGCACCACTAAAATAGAGATGTTTTAGTGA
CATTGGAGTTATCTTAAGCATCAGTTTTTTAAGTGAATTGTTTTGGCTTCTATATGGATG
GATGCCTATATCAATGAGAAGAAAGAAACTCACAATAAATGATATTTTTGTAATTTATTT
GTATTAAGAAATGCTCCTTTTTTGTTTTTTGTTTTTTTCAATTTTTGGATTGCTACATAA
GACTTTCCCATTTAAAGTTTAGATCATGTGTTTTTAAAAGCTGCAGGTAATTTTCAAGGT
GTGATGGAATTTTAATGGAAGCCTTGTATAAGTTAAATGAAGTGAACCTGATAAAGGAGA
TCTTTATTTGTCTATAGTGCATTCAAGATTATACAATTAGATTTAAAATGAAATGTCTGA
TTTGTAATATATTTAATGTTATATCAGACTTATATAAAATTTTCTGTGTGAGAACTCTGT
TAAAGAAAATGCATTTGATTTTTAATGAATGTTTTACTGAATGGTTTATGATGATTTTTT
TTTGTCTTTCCGTCTCTGCAGTTTATCTCAATATATGAATAAAAAGAAGGTCTGTTCTCA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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54-1440, gnl|bosTau2|chr6 (9406318-9407692) |
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54-1440, gnl|canFam2|chr32 (24763895-24764812) |
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54-1440, gnl|dasNov1|scaffold_40824 (458-1467) |
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54-1440, gnl|echTel1|scaffold_309047 (47665-46734) |
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54-1440, gnl|hg17|chr4 (101174557-101175431) |
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54-1440, gnl|Hg17|chr4 (101175901-101174591) |
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54-1440, gnl|loxAfr1|scaffold_80695 (492-1377) |
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54-1440, gnl|mm7|chr3 (137724830-137723960) |
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54-1440, gnl|Mm7|chr3 (137723526-137724794) |
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54-1440, gnl|monDom2|scaffold_37 (12829353-12828382) |
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54-1440, gnl|panTro1|chr3 (117552078-117552954) |
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54-1440, gnl|rheMac2|chr5 (92853772-92854655) |
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54-1440, gnl|rn3|chr2 (235393488-235392626) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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54-1440, gnl|bosTau2|chr6 (9406318-9407692) |
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54-1440, gnl|canFam2|chr32 (24763895-24764812) |
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54-1440, gnl|dasNov1|scaffold_40824 (458-1467) |
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54-1440, gnl|echTel1|scaffold_309047 (47665-46734) |
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54-1440, gnl|hg17|chr4 (101174557-101175431) |
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54-1440, gnl|Hg17|chr4 (101175901-101174591) |
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54-1440, gnl|loxAfr1|scaffold_80695 (492-1377) |
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54-1440, gnl|mm7|chr3 (137724830-137723960) |
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54-1440, gnl|Mm7|chr3 (137723526-137724794) |
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54-1440, gnl|monDom2|scaffold_37 (12829353-12828382) |
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54-1440, gnl|panTro1|chr3 (117552078-117552954) |
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54-1440, gnl|rheMac2|chr5 (92853772-92854655) |
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54-1440, gnl|rn3|chr2 (235393488-235392626) |
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fco (0.314416) |
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ret (0.257467) |
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sug (0.254582) |
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tra (0.246184) |
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cbe (0.239234) |
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gul (0.177588) |
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fbs (0.175346) |
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eye (0.170503) |
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lin (0.145603) |
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eru (0.120048) |
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jej (0.0989218) |
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fco (0.314416) |
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ret (0.257467) |
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sug (0.254582) |
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tra (0.246184) |
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cbe (0.239234) |
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gul (0.177588) |
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fbs (0.175346) |
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eye (0.170503) |
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lin (0.145603) |
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eru (0.120048) |
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jej (0.0989218) |