Non-Coding RNA Search

Ss1.1-Pig4-TMW8043A17.3

Sequence:


               
               GGCGGGCAGTGATGGCGGCGGGTGATGGGGACGTGAAGCTAGGCACCCTAGGGAGTGGCA
GCGAGAGCAGCAGCGACGGCAGCAGCGAGAGCCCAGGCGGCGCGGGAGAGGCAGCAGAAG
GGGGCGGTTGGGCGACAGCGGCGTTGGCGCTTCTGACGGGGGGCGGGGAGATGCTGCTGA
ACGTGGCGCTGGTGGCGCTAGTGCTGCTGGGGGCCTACCGGCTGTGGGTGCGCTGGGGGC
GGCGGGGTCTGGGCGCCGGAGCCGGGGCAGGCGAGGAGAGCCCAGCCGCTTCTCTGCCTC
GTATGAAGAAGCGGGACTTCAGCTTGGAGCAGCTGCGCCAGTATGACGGGTCCCGCACGC
CGCGCATCCTACTCGCGGTCAATGGGAAAGTCTTCGACGTGACCAAAGGCAGCAAGTTCT
ACGGCCCGGCGGGTCCATATGGAATATTTGCTGGTAGGGATGCCTCCAGAGGACTGGCGA
CATTTTGCCTAGATAAAGATGCACTTAAAGATGAATATGATGATCTCTCAGATTTGAATG
CCGTACAAATGGAGAGTGTTCGAGAATGGGAAATGCAATTTAAAGAAAAATATGATTATG
TAGGCAGACTCCTAAAACCAGGGGAAGAACCGTCAGAATATACAGATGAAGAAGATACCA
AGGATCACAATAAACAGGATTGAACTTTGTAAACAACCAAAGTCAGGGGCCTTCAGAACT
GCAATTCTTAACTCCCTTTCACAGAATGTCCAGCGTCTTTGGGTTTGGTTCACCTGCTGC
AAAAAACATTCAACAGATTGTTTGTACAAGCTAAATGAGTCTCACTATGAAGATTTGAAT
ACTAGACATTATTTATGCTGCCAAATTCTTTTGTTGCAGTTGTTTGTAATGTCTGGTGGG
GCTTCTTCATCCTGAAAAGGAGACAGGGATCTTTTAAAGAGCAAGAAAGTCACAATATTA
CTTTTTCCTTTTTTTTCTTTCTTTTTTTTTTTTCCTTAAATCAAAGACAACCTGATATGT
ATTTGCTACCTAACTGTACAAATTTCCTCAAAAAACAACAAGTGATTCCTGTTTCATGTG
CTGTGTTTTTAACAGTGAGGGAGAGAGGAGACCTGGGGAGGAGAGGTGAGGGTGCACATT
AATTTGAGTAGTTAAGGCTACCAAAACATTAAAATATGAATTCCCAAACTTTTCTTTTGG
GGTTTTGTCAGGGAAAAGAAAAAACTTTATTTCTAAGAAATCTTTGGAAATTAGAAGAAG
TGGATTTAAGTCAAAGCTAATTTCCCAAAAGTAAGTCGTTTGAAACTAGTTTTCATCCCT
TTCCTTCCCCTAGATCAAATCAATATTAATTGTGCCTTATTTCACTTACATAGACTTGAA
TTATTTTTAGGGAAAAGCCCTTATGTGAATTCAGAAGTCACTACAAGCAGCATTGAGACT
GAAGTTGGAATATTCTGTTGACTGCAAAACCTTGATATCATTCTGTGTGTATAGAATGTA
AAAGGAATACTCAGTGTTACTGCCGTATATGTTAATATACACAAACTTAATTAGCATTGT
TAATGGCCAAATGGATTCTCCCATGCTTCTCTCTTTTCAAAAAAAAAAAAAAAAAATTTG
AGAAACAAATCAACAACTCTGTCCCCCAACAGCTGCCTAATTTAAGGAGTCTGACTCTCA
CATCTCACTGGTGTGGGTGCATGGGGCTGTAGTGTGGATGTCGTATGGGTGTGTCAGAGA
GTGTGTGAGAGTGCCTTGGAAGGGACTCTGCAGATACTGTAAATACCCATACCATTTTAA
TAAAGCATGTACCGTAAACCAAAATAAGCTTGAGTTGGACTTTATATACAAACTGTAAGC
CAGTGCATTATAATATGGTGGTCAAGATTGTGCACCTGATTCAAGATAAGGAAAAATCTT
GGAAGTGAAAAGCAGGCACTGTTTAACCAAGTTGTACACATTGTACCACATTCACTGTAA
CTTTAGGAAGAAATTCCACTTTGTGGAACATTCTCAAGAGATCTGAGGTTATTCAGGTAA
GAACTGATATATAAAAAATGTACATATTTTTACTTTATATTTTGATGCCAACTGATTATA
CTAGAAGTACTAGCACTCCAGTGGTAGTTATTGAACACAAAACAATAAAGGATATTATAC
TGATAGGTATTAAATTCTTCTGTTAGTTTGAAAAAGCCCTTACTAAAAGCCCTATATATG
TCCATTTGATTTCATCATGCCTATTTCAGTTCTCAATTGGAGACAAACTATGCCAAAAAA
GTCACCAGTTAGAAAAAAGAATTTTGCTTGATGGGTATAAGATACACAGAAGCCATCAAA
GAAAGAGGAACTTTTAACTGCAATAATAAGCTAAAGTCTGTAAAATACTACATTCTATTA
TATTCAATCTTGGAACATTTTGTAGAAAATAATGAACTTCAGCCAAATCCTTGCTGAAGA
CTGGTTGCAGCAACTGAAGAGTGTTGGTAAATGCTTTGTGTGTTTTTATGTAAAATATTT
TCTAAACAGATTTGTTAAAGTACGTGTTGTCCTCTGAAGTAAACTGATATATAATATATA
TATATGTCAGTTGAGCCTAAAGTTAAGTAAATCTACATTTGTGAATAGAGAAACTAAATA
TTCAGTAAAAATTATGCAGTCTGTTAAGAAAAATGAGTAATTTTGTGTTTGGAATTTGAA
ATAAACAGTGTTCTATGGACAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGGCAGTGATGGCGGCGGGTGATGGGGACGTGAAGCTAGGCACCCTAGGGAGTGGCA
GCGAGAGCAGCAGCGACGGCAGCAGCGAGAGCCCAGGCGGCGCGGGAGAGGCAGCAGAAG
GGGGCGGTTGGGCGACAGCGGCGTTGGCGCTTCTGACGGGGGGCGGGGAGATGCTGCTGA
ACGTGGCGCTGGTGGCGCTAGTGCTGCTGGGGGCCTACCGGCTGTGGGTGCGCTGGGGGC
GGCGGGGTCTGGGCGCCGGAGCCGGGGCAGGCGAGGAGAGCCCAGCCGCTTCTCTGCCTC
GTATGAAGAAGCGGGACTTCAGCTTGGAGCAGCTGCGCCAGTATGACGGGTCCCGCACGC
CGCGCATCCTACTCGCGGTCAATGGGAAAGTCTTCGACGTGACCAAAGGCAGCAAGTTCT
ACGGCCCGGCGGGTCCATATGGAATATTTGCTGGTAGGGATGCCTCCAGAGGACTGGCGA
CATTTTGCCTAGATAAAGATGCACTTAAAGATGAATATGATGATCTCTCAGATTTGAATG
CCGTACAAATGGAGAGTGTTCGAGAATGGGAAATGCAATTTAAAGAAAAATATGATTATG
TAGGCAGACTCCTAAAACCAGGGGAAGAACCGTCAGAATATACAGATGAAGAAGATACCA
AGGATCACAATAAACAGGATTGAACTTTGTAAACAACCAAAGTCAGGGGCCTTCAGAACT
GCAATTCTTAACTCCCTTTCACAGAATGTCCAGCGTCTTTGGGTTTGGTTCACCTGCTGC
AAAAAACATTCAACAGATTGTTTGTACAAGCTAAATGAGTCTCACTATGAAGATTTGAAT
ACTAGACATTATTTATGCTGCCAAATTCTTTTGTTGCAGTTGTTTGTAATGTCTGGTGGG
GCTTCTTCATCCTGAAAAGGAGACAGGGATCTTTTAAAGAGCAAGAAAGTCACAATATTA
CTTTTTCCTTTTTTTTCTTTCTTTTTTTTTTTTCCTTAAATCAAAGACAACCTGATATGT
ATTTGCTACCTAACTGTACAAATTTCCTCAAAAAACAACAAGTGATTCCTGTTTCATGTG
CTGTGTTTTTAACAGTGAGGGAGAGAGGAGACCTGGGGAGGAGAGGTGAGGGTGCACATT
AATTTGAGTAGTTAAGGCTACCAAAACATTAAAATATGAATTCCCAAACTTTTCTTTTGG
GGTTTTGTCAGGGAAAAGAAAAAACTTTATTTCTAAGAAATCTTTGGAAATTAGAAGAAG
TGGATTTAAGTCAAAGCTAATTTCCCAAAAGTAAGTCGTTTGAAACTAGTTTTCATCCCT
TTCCTTCCCCTAGATCAAATCAATATTAATTGTGCCTTATTTCACTTACATAGACTTGAA
TTATTTTTAGGGAAAAGCCCTTATGTGAATTCAGAAGTCACTACAAGCAGCATTGAGACT
GAAGTTGGAATATTCTGTTGACTGCAAAACCTTGATATCATTCTGTGTGTATAGAATGTA
AAAGGAATACTCAGTGTTACTGCCGTATATGTTAATATACACAAACTTAATTAGCATTGT
TAATGGCCAAATGGATTCTCCCATGCTTCTCTCTTTTCAAAAAAAAAAAAAAAAAATTTG
AGAAACAAATCAACAACTCTGTCCCCCAACAGCTGCCTAATTTAAGGAGTCTGACTCTCA
CATCTCACTGGTGTGGGTGCATGGGGCTGTAGTGTGGATGTCGTATGGGTGTGTCAGAGA
GTGTGTGAGAGTGCCTTGGAAGGGACTCTGCAGATACTGTAAATACCCATACCATTTTAA
TAAAGCATGTACCGTAAACCAAAATAAGCTTGAGTTGGACTTTATATACAAACTGTAAGC
CAGTGCATTATAATATGGTGGTCAAGATTGTGCACCTGATTCAAGATAAGGAAAAATCTT
GGAAGTGAAAAGCAGGCACTGTTTAACCAAGTTGTACACATTGTACCACATTCACTGTAA
CTTTAGGAAGAAATTCCACTTTGTGGAACATTCTCAAGAGATCTGAGGTTATTCAGGTAA
GAACTGATATATAAAAAATGTACATATTTTTACTTTATATTTTGATGCCAACTGATTATA
CTAGAAGTACTAGCACTCCAGTGGTAGTTATTGAACACAAAACAATAAAGGATATTATAC
TGATAGGTATTAAATTCTTCTGTTAGTTTGAAAAAGCCCTTACTAAAAGCCCTATATATG
TCCATTTGATTTCATCATGCCTATTTCAGTTCTCAATTGGAGACAAACTATGCCAAAAAA
GTCACCAGTTAGAAAAAAGAATTTTGCTTGATGGGTATAAGATACACAGAAGCCATCAAA
GAAAGAGGAACTTTTAACTGCAATAATAAGCTAAAGTCTGTAAAATACTACATTCTATTA
TATTCAATCTTGGAACATTTTGTAGAAAATAATGAACTTCAGCCAAATCCTTGCTGAAGA
CTGGTTGCAGCAACTGAAGAGTGTTGGTAAATGCTTTGTGTGTTTTTATGTAAAATATTT
TCTAAACAGATTTGTTAAAGTACGTGTTGTCCTCTGAAGTAAACTGATATATAATATATA
TATATGTCAGTTGAGCCTAAAGTTAAGTAAATCTACATTTGTGAATAGAGAAACTAAATA
TTCAGTAAAAATTATGCAGTCTGTTAAGAAAAATGAGTAATTTTGTGTTTGGAATTTGAA
ATAAACAGTGTTCTATGGACAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q569H1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q569H1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               813-928, + strand, RNAz p=0.980188
               

               
               1570-1688, - strand, RNAz p=0.65523
               

               
               1844-1958, - strand, RNAz p=0.890522

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               813-928, + strand, RNAz p=0.980188
               

               
               1570-1688, - strand, RNAz p=0.65523
               

               
               1844-1958, - strand, RNAz p=0.890522

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK091741, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK091741, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-429, gnl|bosTau2|chr17 (18941295-18940867)
               

               
               1-429, gnl|Hg17|chr4 (129566561-129566133)
               

               
               1-429, gnl|Mm7|chr3 (40857396-40856986)
               


               
               573-2722, gnl|bosTau2|chr17 (18924090-18921886)
               

               
               573-2722, gnl|Hg17|chr4 (129550186-129548010)
               

               
               573-2722, gnl|Mm7|chr3 (40843128-40841071)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-429, gnl|bosTau2|chr17 (18941295-18940867)
               

               
               1-429, gnl|Hg17|chr4 (129566561-129566133)
               

               
               1-429, gnl|Mm7|chr3 (40857396-40856986)
               


               
               573-2722, gnl|bosTau2|chr17 (18924090-18921886)
               

               
               573-2722, gnl|Hg17|chr4 (129550186-129548010)
               

               
               573-2722, gnl|Mm7|chr3 (40843128-40841071)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               sug (1.27291)
               

               
               bfe (1.19886)
               

               
               spl (0.859107)
               

               
               fco (0.78604)
               

               
               aor (0.781097)
               

               
               kid (0.778412)
               

               
               tbr (0.770891)
               

               
               fat (0.737137)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               col (0.585023)
               

               
               ste (0.540833)
               

               
               gul (0.532765)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               jca (0.34188)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (1.27291)
               

               
               bfe (1.19886)
               

               
               spl (0.859107)
               

               
               fco (0.78604)
               

               
               aor (0.781097)
               

               
               kid (0.778412)
               

               
               tbr (0.770891)
               

               
               fat (0.737137)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               col (0.585023)
               

               
               ste (0.540833)
               

               
               gul (0.532765)
               

               
               lun (0.451467)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               jca (0.34188)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               lyg (0.266205)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	813-928, + strand, RNAz p=0.980188
	1570-1688, - strand, RNAz p=0.65523
	1844-1958, - strand, RNAz p=0.890522

	1-429, gnl\|bosTau2\|chr17 (18941295-18940867)
	1-429, gnl\|Hg17\|chr4 (129566561-129566133)
	1-429, gnl\|Mm7\|chr3 (40857396-40856986)

	573-2722, gnl\|bosTau2\|chr17 (18924090-18921886)
	573-2722, gnl\|Hg17\|chr4 (129550186-129548010)
	573-2722, gnl\|Mm7\|chr3 (40843128-40841071)

	sug (1.27291)
	bfe (1.19886)
	spl (0.859107)
	fco (0.78604)
	aor (0.781097)
	kid (0.778412)
	tbr (0.770891)
	fat (0.737137)
	ret (0.643666)
	liv (0.585137)
	col (0.585023)
	ste (0.540833)
	gul (0.532765)
	lun (0.451467)
	csk (0.422238)
	elu (0.385356)
	nlu (0.383362)
	sto (0.359648)
	pgl (0.35545)
	jca (0.34188)
	ski (0.29347)
	lnt (0.284616)
	nca (0.273748)
	lyg (0.266205)
	eep (0.245128)
	ece (0.229305)
	ldo (0.194005)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	rec (0.17307)
	cki (0.165235)
	mga (0.160205)
	isp (0.150376)
	cst (0.140036)
	ssp (0.13552)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	clu (0.119646)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)