Ss1.1-Pig4-TMW8043B16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCCCGGGAGTTAGAACTGAGTCCCCGCGGCAAAAGCGGGAGCGGAGTGGAACTTGCT TACTGCGCGGGTATGGAAAGTGCGGCTTCACTTCGCGCACCTTAGACCTTAACCAGACCC CGAGCAAGGCCGCGGCCGGCCTAGGTGGCCTGCACCCGGCCCTCGGCGCTGCTAGGGAAA AGCGGGCGTGGTTTGCTGCGTCTGAGGCGGCGGCGGGAACAGCTCAGCCTCTTGGACCTC TGTCCCTGCCGCCCCAGTGGCGGACGAAAAGCTCCCTTGGAGTTTTGATTCACTGAGTGA CCTTGAGCTCAGAGCGACGCGTAGTTTGTAGTTTCGGCTGCACTCGGCTATTCAGGAACT TTGTGAGAATTTCATTATATGGAGACACTGTTTGTGTTCCAGCTGGTGTATATCCAAAGG TCCCAGTGTAATTCCAGGACCGGAATATTGCATGTCAGTCAGTCAGCCAGCCATACACGT AATGACTTCTAAACTCATGGACTTCTAAAAAAGCACCATGACTCTCATGATTCCTGGGTT GCTGAGAGGCTCTGTTGGTGCCATCTGCTTGCAGGCTGCTTCCTGGAGATTGACACACAG AACTTTGCGCCACCTGACTCTAAGCAGCCTAATGAAATCCAAAAGGAAAACTGATCACTT GGAGAGAACTGCAGATGTCCTTCGCCGGGAGGTGGTGTCAGTGGCTAAGGTGTGTGGAGT GGCCCATGAGTCCCCATCTGTGAAGAGGCTCCGCTTGCTTGTTGCTGATAAAGATTTTTC TTTTAAAGCCGGCCAATGGGTTGATTTCTTTATCCCGGGAGTCTCTGTGGTTGGTGGATT CTCAATATGCTCCAGCCCCAGACTGCTAGAACAGGAGAGAATCATAGAACTGGCAGTGAA ATATACAAACCACCCTCCTGCTCTCTGGATTCACAATCAGTGTACACTGGACTCTGAAGT GGCCGTGAGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGCAGATGCTTCTAGAAA CCTTGTGTTGATCGCGGGAGGAGTTGGAATTAACCCTCTGCTTTCCATCCTGCGGCATGT GGCAGACCTCCACAGAGAATGGGCGAACAAGGGAAGTGGGTATAAGGTCGGAACAATCAA ACTGTTCTACAGTGCAAAAAACACCAGCGAGCTCCTGTTCAAGAAAAATATCCTCGATTT AGTAAATGAATTTCCTGAGAAGATTGCCTGCAGTTTGCATGTTACAAAGCAGACTACACA AATCAGTGCAGACCTCAAGCCATACATCACGGAAGGAAGACTAACGGAGAAGGAGATAAG AGATCATATTTCGAAAGAGACCTTGTTCTACCTTTGTGGCCCACCTCCGATGACAGACTT CTTCTCCAAGGAACTGGCGAGGAGCCACATTCCCAGAGAGCACATTTGCTTTGAGAAGTG GTGGTAGGGGGCAGGCAGAGGTGGAAAAGGGTGAATCAGGAGGGCCTCTAGGATAGTGAC AGGCAGCATGCTCTGTGATTTGTGGCAGGATGAATTTACCTCTATCCAGTCTTATATTTT AAGGCTGTGAACTCAGTGACCAGTTGGAGAAGACAAGAAAAAGCAGCTGACATACTTAAA GGCCTTTTGCCAAAAAGTTTATTGATGAAACTTTTTTTTACTACGTTGACTTTTATGAAT GACTGATTAACTCATGTTGTACCTGGAATTGACCAATACAGGTTTCCTTTCCCCTTAAGG AAAAAAACATGAAAATATGGTTTGTGTGTGAAATGTAGGCTATATTTAAATTATTTTACA GCAGCTTCTCTATCTCATGTTGAATAAACTTAAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCCCGGGAGTTAGAACTGAGTCCCCGCGGCAAAAGCGGGAGCGGAGTGGAACTTGCT TACTGCGCGGGTATGGAAAGTGCGGCTTCACTTCGCGCACCTTAGACCTTAACCAGACCC CGAGCAAGGCCGCGGCCGGCCTAGGTGGCCTGCACCCGGCCCTCGGCGCTGCTAGGGAAA AGCGGGCGTGGTTTGCTGCGTCTGAGGCGGCGGCGGGAACAGCTCAGCCTCTTGGACCTC TGTCCCTGCCGCCCCAGTGGCGGACGAAAAGCTCCCTTGGAGTTTTGATTCACTGAGTGA CCTTGAGCTCAGAGCGACGCGTAGTTTGTAGTTTCGGCTGCACTCGGCTATTCAGGAACT TTGTGAGAATTTCATTATATGGAGACACTGTTTGTGTTCCAGCTGGTGTATATCCAAAGG TCCCAGTGTAATTCCAGGACCGGAATATTGCATGTCAGTCAGTCAGCCAGCCATACACGT AATGACTTCTAAACTCATGGACTTCTAAAAAAGCACCATGACTCTCATGATTCCTGGGTT GCTGAGAGGCTCTGTTGGTGCCATCTGCTTGCAGGCTGCTTCCTGGAGATTGACACACAG AACTTTGCGCCACCTGACTCTAAGCAGCCTAATGAAATCCAAAAGGAAAACTGATCACTT GGAGAGAACTGCAGATGTCCTTCGCCGGGAGGTGGTGTCAGTGGCTAAGGTGTGTGGAGT GGCCCATGAGTCCCCATCTGTGAAGAGGCTCCGCTTGCTTGTTGCTGATAAAGATTTTTC TTTTAAAGCCGGCCAATGGGTTGATTTCTTTATCCCGGGAGTCTCTGTGGTTGGTGGATT CTCAATATGCTCCAGCCCCAGACTGCTAGAACAGGAGAGAATCATAGAACTGGCAGTGAA ATATACAAACCACCCTCCTGCTCTCTGGATTCACAATCAGTGTACACTGGACTCTGAAGT GGCCGTGAGAGTGGGTGGAGAGTTCTTCTTTGACCCTCAGCCTGCAGATGCTTCTAGAAA CCTTGTGTTGATCGCGGGAGGAGTTGGAATTAACCCTCTGCTTTCCATCCTGCGGCATGT GGCAGACCTCCACAGAGAATGGGCGAACAAGGGAAGTGGGTATAAGGTCGGAACAATCAA ACTGTTCTACAGTGCAAAAAACACCAGCGAGCTCCTGTTCAAGAAAAATATCCTCGATTT AGTAAATGAATTTCCTGAGAAGATTGCCTGCAGTTTGCATGTTACAAAGCAGACTACACA AATCAGTGCAGACCTCAAGCCATACATCACGGAAGGAAGACTAACGGAGAAGGAGATAAG AGATCATATTTCGAAAGAGACCTTGTTCTACCTTTGTGGCCCACCTCCGATGACAGACTT CTTCTCCAAGGAACTGGCGAGGAGCCACATTCCCAGAGAGCACATTTGCTTTGAGAAGTG GTGGTAGGGGGCAGGCAGAGGTGGAAAAGGGTGAATCAGGAGGGCCTCTAGGATAGTGAC AGGCAGCATGCTCTGTGATTTGTGGCAGGATGAATTTACCTCTATCCAGTCTTATATTTT AAGGCTGTGAACTCAGTGACCAGTTGGAGAAGACAAGAAAAAGCAGCTGACATACTTAAA GGCCTTTTGCCAAAAAGTTTATTGATGAAACTTTTTTTTACTACGTTGACTTTTATGAAT GACTGATTAACTCATGTTGTACCTGGAATTGACCAATACAGGTTTCCTTTCCCCTTAAGG AAAAAAACATGAAAATATGGTTTGTGTGTGAAATGTAGGCTATATTTAAATTATTTTACA GCAGCTTCTCTATCTCATGTTGAATAAACTTAAACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 88-359, gnl|bosTau2|chr1 (100426425-100426177) | |
| 88-359, gnl|canFam2|chr23 (29573446-29573168) | |
| 88-359, gnl|dasNov1|scaffold_74115 (4953-5197) | |
| 88-359, gnl|echTel1|scaffold_324330 (70828-70533) | |
| 88-359, gnl|hg17|chr3 (16281789-16282053) | |
| 88-359, gnl|Hg17|chr3 (16281797-16282020) | |
| 88-359, gnl|loxAfr1|scaffold_2248 (21098-21401) | |
| 88-359, gnl|mm7|chr14 (29515504-29515736) | |
| 88-359, gnl|oryCun1|scaffold_177473 (32691-32386) | |
| 88-359, gnl|panTro1|chr2 (16898177-16898441) | |
| 88-359, gnl|rheMac2|chr2 (158582209-158582468) | |
| 88-359, gnl|rn3|chr16 (7546848-7547081) | |
| 690-799, gnl|bosTau2|chr1 (24612336-24612227) | |
| 690-799, gnl|Hg17|chr3 (16302851-16302960) | |
| 690-799, gnl|Mm7|chr14 (29525010-29525119) | |
| 938-1183, gnl|bosTau2|chr1 (24589310-24589065) | |
| 938-1183, gnl|canFam2|chr23 (29539265-29538994) | |
| 938-1183, gnl|danRer3|chr19 (22754280-22754539) | |
| 938-1183, gnl|dasNov1|scaffold_30069 (3292-3022) | |
| 938-1183, gnl|echTel1|scaffold_97579 (672-947) | |
| 938-1183, gnl|fr1|chrUn (24178864-24178598) | |
| 938-1183, gnl|galGal2|chr2 (33467443-33467714) | |
| 938-1183, gnl|hg17|chr3 (16318117-16318388) | |
| 938-1183, gnl|Hg17|chr3 (16318134-16318379) | |
| 938-1183, gnl|loxAfr1|scaffold_47898 (15678-15951) | |
| 938-1183, gnl|mm7|chr17 (48128213-48128496) | |
| 938-1183, gnl|Mm7|chr17 (48128230-48128487) | |
| 938-1183, gnl|monDom2|scaffold_7 (71955545-71955811) | |
| 938-1183, gnl|oryCun1|scaffold_211494 (73168-72898) | |
| 938-1183, gnl|panTro1|chr2 (16935934-16936205) | |
| 938-1183, gnl|rheMac2|chr2 (158621404-158621675) | |
| 938-1183, gnl|rn3|chr9 (6220436-6220138) | |
| 938-1183, gnl|tetNig1|chr21 (3164522-3164790) | |
| 938-1183, gnl|xenTro1|scaffold_190 (253596-253327) | |
| 1292-1834, gnl|bosTau2|chr1 (24587520-24586973) | |
| 1292-1834, gnl|Hg17|chr3 (16319918-16320490) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-359, gnl|bosTau2|chr1 (100426425-100426177) | |
| 88-359, gnl|canFam2|chr23 (29573446-29573168) | |
| 88-359, gnl|dasNov1|scaffold_74115 (4953-5197) | |
| 88-359, gnl|echTel1|scaffold_324330 (70828-70533) | |
| 88-359, gnl|hg17|chr3 (16281789-16282053) | |
| 88-359, gnl|Hg17|chr3 (16281797-16282020) | |
| 88-359, gnl|loxAfr1|scaffold_2248 (21098-21401) | |
| 88-359, gnl|mm7|chr14 (29515504-29515736) | |
| 88-359, gnl|oryCun1|scaffold_177473 (32691-32386) | |
| 88-359, gnl|panTro1|chr2 (16898177-16898441) | |
| 88-359, gnl|rheMac2|chr2 (158582209-158582468) | |
| 88-359, gnl|rn3|chr16 (7546848-7547081) | |
| 690-799, gnl|bosTau2|chr1 (24612336-24612227) | |
| 690-799, gnl|Hg17|chr3 (16302851-16302960) | |
| 690-799, gnl|Mm7|chr14 (29525010-29525119) | |
| 938-1183, gnl|bosTau2|chr1 (24589310-24589065) | |
| 938-1183, gnl|canFam2|chr23 (29539265-29538994) | |
| 938-1183, gnl|danRer3|chr19 (22754280-22754539) | |
| 938-1183, gnl|dasNov1|scaffold_30069 (3292-3022) | |
| 938-1183, gnl|echTel1|scaffold_97579 (672-947) | |
| 938-1183, gnl|fr1|chrUn (24178864-24178598) | |
| 938-1183, gnl|galGal2|chr2 (33467443-33467714) | |
| 938-1183, gnl|hg17|chr3 (16318117-16318388) | |
| 938-1183, gnl|Hg17|chr3 (16318134-16318379) | |
| 938-1183, gnl|loxAfr1|scaffold_47898 (15678-15951) | |
| 938-1183, gnl|mm7|chr17 (48128213-48128496) | |
| 938-1183, gnl|Mm7|chr17 (48128230-48128487) | |
| 938-1183, gnl|monDom2|scaffold_7 (71955545-71955811) | |
| 938-1183, gnl|oryCun1|scaffold_211494 (73168-72898) | |
| 938-1183, gnl|panTro1|chr2 (16935934-16936205) | |
| 938-1183, gnl|rheMac2|chr2 (158621404-158621675) | |
| 938-1183, gnl|rn3|chr9 (6220436-6220138) | |
| 938-1183, gnl|tetNig1|chr21 (3164522-3164790) | |
| 938-1183, gnl|xenTro1|scaffold_190 (253596-253327) | |
| 1292-1834, gnl|bosTau2|chr1 (24587520-24586973) | |
| 1292-1834, gnl|Hg17|chr3 (16319918-16320490) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cmu (0.372787) | |
| cki (0.330469) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| tra (0.123092) | |
| eru (0.120048) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| cki (0.330469) | |
| cte (0.29274) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| isp (0.150376) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| tra (0.123092) | |
| eru (0.120048) |