Non-Coding RNA Search

Ss1.1-Pig4-TMW8043C05.3

Sequence:


               
               TTTTTTTTTTTTTCTGAAGCAGCTGATGTGTACAGAGACACTAAAACTCACACCACTTTA
TGTGGGGAACGAGGATCCTTTTTTCTCTCCAGGTAGTCCCGCGGGGTGTGCAGTTTAAGT
TCAGTGTGTCTTATGCCGTGAGTTATTTCCGCCTCGGAGGCTTTAGCCTCTGGGACAGTA
AATACTGCAGAAACCAAGAACTCTTGGTTTATCTGCACGAGACAAGCTGCTGGTAGACGT
TAGCCCTCTGGTTTTCCAGCTCAACCTCTGATGAAGTAGATTGACCATCAGGCTGGTCAG
TCTGCTTAGTCAGTGACTCAGGTTCTTTTCAGGGAAGGCCTGGAGGCATGTTTGGTTCAT
TTCATCGCCAGGACGTGTAAGGTGAAAACACAAACCAAATACCTTTCATTACTTAACTCT
ACGTACATGACCTTCGGTAACACTAGAAGGCTGTGGTCTTGAGGGGATGTGAGCACACTT
GCGTGATACACGGAAGGGATGGTGCTTCATAAGCCTGTCCAGCTGTGGCAGGTTTGGTTT
AGCACGGTGGTGTGTACCTTGGGAAAGTACAAGCTTCATGAACTGTTCTTATTAAACTAT
AATTGAATAGATACCAAAAATAGAATGACAGATGTATTTTAATAGCAGATGAGGCAGATT
AGTTTTAGGGTGAGTTTTTCCCACTGTTGATTTTACTCATGACACAGGGAGAGAAACAAG
TTCATTTTCAAAAACATTTTCCTCTGCAGTTTTAAACTGTAGTGAGTATCTGCTTCATTG
ACTTCCAAAGAGGCAGAAGCAGCTGGCATTGGCTTCGAGCACATGCTTTGTTTCATATTA
TGGTTGATGACCTACATTCTTATTTTAACAGTCACTTACTATTCTCCAGCAAGGCAGATG
GGGGGTTCACTAGGACGTAGTGCCTGATCTTTGGGGAAGGGGTGGGAGTGAATGTACTGG
GGATGGGAGGGAAGCAGGAGAAGATAATGGCAGCGTGAGTGAGTGTGCATGGGTCTGAAA
TTCACCTTTAACCCCCACCTGTGTCTAGCAAGGAACAGGTCTTTAATGTATTTTGCTCAA
GACTGCAGTGTGCATGTATTTTTTTTCCCCATCCATGTTTTCTAAACTTAAAAGAATTCA
TCAAATCATCTTGTTCAGATGGCTCAGGATTGTATTTCTTTTGCTTACCCTGTGCTCTTG
GGTTCTATAGTATTTCTATAATTATGTAACAATAGTGTTGCACTGTAATCTATCATATAG
AGCTATATGTATGGAAAATTTTGATCAGTTTTTTAAGAAATGTACCCTGTTTGCAAAGGC
ACAATAAAAGTTGCATCTTATAGACTATAGGCAATAAAGCTAACAATAAACCTTATTTAA
CACAAACCATATTCACATTCTCTGTTCATTTGATCTTGAGAAAAATCTAGCATATCCAGT
AGTTTCAGGGATTTCATTTTAACTTAAAAGGTTCTGATGTATTTAATTTATAAATTTCAG
ACTGATATAATAGAGTTTTGGAAAACTATAAGAAATGCTTTGTTAATGTGTGTATTCCTA
TGTAAAACACATGGCTTCTCCTGTGTATATTTTTAAAAAATTAAAGAAATGCACATTTGA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTCTGAAGCAGCTGATGTGTACAGAGACACTAAAACTCACACCACTTTA
TGTGGGGAACGAGGATCCTTTTTTCTCTCCAGGTAGTCCCGCGGGGTGTGCAGTTTAAGT
TCAGTGTGTCTTATGCCGTGAGTTATTTCCGCCTCGGAGGCTTTAGCCTCTGGGACAGTA
AATACTGCAGAAACCAAGAACTCTTGGTTTATCTGCACGAGACAAGCTGCTGGTAGACGT
TAGCCCTCTGGTTTTCCAGCTCAACCTCTGATGAAGTAGATTGACCATCAGGCTGGTCAG
TCTGCTTAGTCAGTGACTCAGGTTCTTTTCAGGGAAGGCCTGGAGGCATGTTTGGTTCAT
TTCATCGCCAGGACGTGTAAGGTGAAAACACAAACCAAATACCTTTCATTACTTAACTCT
ACGTACATGACCTTCGGTAACACTAGAAGGCTGTGGTCTTGAGGGGATGTGAGCACACTT
GCGTGATACACGGAAGGGATGGTGCTTCATAAGCCTGTCCAGCTGTGGCAGGTTTGGTTT
AGCACGGTGGTGTGTACCTTGGGAAAGTACAAGCTTCATGAACTGTTCTTATTAAACTAT
AATTGAATAGATACCAAAAATAGAATGACAGATGTATTTTAATAGCAGATGAGGCAGATT
AGTTTTAGGGTGAGTTTTTCCCACTGTTGATTTTACTCATGACACAGGGAGAGAAACAAG
TTCATTTTCAAAAACATTTTCCTCTGCAGTTTTAAACTGTAGTGAGTATCTGCTTCATTG
ACTTCCAAAGAGGCAGAAGCAGCTGGCATTGGCTTCGAGCACATGCTTTGTTTCATATTA
TGGTTGATGACCTACATTCTTATTTTAACAGTCACTTACTATTCTCCAGCAAGGCAGATG
GGGGGTTCACTAGGACGTAGTGCCTGATCTTTGGGGAAGGGGTGGGAGTGAATGTACTGG
GGATGGGAGGGAAGCAGGAGAAGATAATGGCAGCGTGAGTGAGTGTGCATGGGTCTGAAA
TTCACCTTTAACCCCCACCTGTGTCTAGCAAGGAACAGGTCTTTAATGTATTTTGCTCAA
GACTGCAGTGTGCATGTATTTTTTTTCCCCATCCATGTTTTCTAAACTTAAAAGAATTCA
TCAAATCATCTTGTTCAGATGGCTCAGGATTGTATTTCTTTTGCTTACCCTGTGCTCTTG
GGTTCTATAGTATTTCTATAATTATGTAACAATAGTGTTGCACTGTAATCTATCATATAG
AGCTATATGTATGGAAAATTTTGATCAGTTTTTTAAGAAATGTACCCTGTTTGCAAAGGC
ACAATAAAAGTTGCATCTTATAGACTATAGGCAATAAAGCTAACAATAAACCTTATTTAA
CACAAACCATATTCACATTCTCTGTTCATTTGATCTTGAGAAAAATCTAGCATATCCAGT
AGTTTCAGGGATTTCATTTTAACTTAAAAGGTTCTGATGTATTTAATTTATAAATTTCAG
ACTGATATAATAGAGTTTTGGAAAACTATAAGAAATGCTTTGTTAATGTGTGTATTCCTA
TGTAAAACACATGGCTTCTCCTGTGTATATTTTTAAAAAATTAAAGAAATGCACATTTGA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-352, - strand, RNAz p=0.985651
               

               
               1238-1354, + strand, RNAz p=0.766221

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-352, - strand, RNAz p=0.985651
               

               
               1238-1354, + strand, RNAz p=0.766221

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               258-360, + strand, RNAmicro p=0.999457

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               258-360, + strand, RNAmicro p=0.999457

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-1623, gnl|bosTau2|chr11 (35459459-35461079)
               

               
               9-1623, gnl|Hg17|chr2 (86915202-86916819)
               

               
               9-1623, gnl|Mm7|chr6 (71408158-71406571)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1623, gnl|bosTau2|chr11 (35459459-35461079)
               

               
               9-1623, gnl|Hg17|chr2 (86915202-86916819)
               

               
               9-1623, gnl|Mm7|chr6 (71408158-71406571)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               tbr (0.616713)
               

               
               ste (0.540833)
               

               
               rec (0.519211)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.616713)
               

               
               ste (0.540833)
               

               
               rec (0.519211)
               

               
               eye (0.341006)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lin (0.145603)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	119-352, - strand, RNAz p=0.985651
	1238-1354, + strand, RNAz p=0.766221

	9-1623, gnl\|bosTau2\|chr11 (35459459-35461079)
	9-1623, gnl\|Hg17\|chr2 (86915202-86916819)
	9-1623, gnl\|Mm7\|chr6 (71408158-71406571)

	tbr (0.616713)
	ste (0.540833)
	rec (0.519211)
	eye (0.341006)
	vin (0.332557)
	sme (0.305437)
	bfe (0.299715)
	ldo (0.291008)
	ssp (0.271039)
	ova (0.258264)
	mgp (0.230681)
	hea (0.204499)
	sag (0.182715)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	lin (0.145603)
	cst (0.140036)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)