Non-Coding RNA Search

Ss1.1-Pig4-TMW8043C22.3

Sequence:


               
               GTCAACTGCACATTTAATATCACCGACACTACTAGCACCAAAGCATCACAGCATGGGGCT
ATTATCACCTCTTTGATTAAAGACACATCTATAATGAAAAAGACAGTCCACCTCATAAAG
GCAAGTGACTCAGGATAATTTAAACCAAGGTCAGCAAAGTTACCATATGAATATGTTTTC
TTTGAAGCCAATTTTATCAAGCCCCTTCACTCTTAGTTCTTACTAAATTTCCTCTTGGAA
TCGAAGAAGTCCAGTCCTGAAGCATTTCCCTACTTACTCTTGACTCTTCCTGATTAAATA
ACTTTAAGTACCAGTAGGAAGTATTATCTTTCTTTATAGCTTTAGTTTCTTTAATTTTCA
TTTCTGAAGAAATGCCACAAGTCTTAAACATTTAAATCATCATCAAAGAAATCTTTTCTT
ATAGCAGAGATATGAATGTTTTGTTGAATTACAGGATAATGCATTTCATGGTACATATGC
TCACCCACATATGAGAACATGACTTAAAATATCCCTTGAGAAAATAACTATTAAGATTAC
CCATGTTAGCTGCTGTCTTAAACGACTACCCTCAGGCATATCAAGCAAATGAAGATTTTT
ATATCTTTTTCTTCACTCAGTGAAGCAAGCCAGAGCCCATGTTTGTATGCCTGAGGTTGT
CTTAAAATTTTATCTGTAAACATGTATCTGATATACTATTTTTAATAAAAAGCTATATGA
AACAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAACTGCACATTTAATATCACCGACACTACTAGCACCAAAGCATCACAGCATGGGGCT
ATTATCACCTCTTTGATTAAAGACACATCTATAATGAAAAAGACAGTCCACCTCATAAAG
GCAAGTGACTCAGGATAATTTAAACCAAGGTCAGCAAAGTTACCATATGAATATGTTTTC
TTTGAAGCCAATTTTATCAAGCCCCTTCACTCTTAGTTCTTACTAAATTTCCTCTTGGAA
TCGAAGAAGTCCAGTCCTGAAGCATTTCCCTACTTACTCTTGACTCTTCCTGATTAAATA
ACTTTAAGTACCAGTAGGAAGTATTATCTTTCTTTATAGCTTTAGTTTCTTTAATTTTCA
TTTCTGAAGAAATGCCACAAGTCTTAAACATTTAAATCATCATCAAAGAAATCTTTTCTT
ATAGCAGAGATATGAATGTTTTGTTGAATTACAGGATAATGCATTTCATGGTACATATGC
TCACCCACATATGAGAACATGACTTAAAATATCCCTTGAGAAAATAACTATTAAGATTAC
CCATGTTAGCTGCTGTCTTAAACGACTACCCTCAGGCATATCAAGCAAATGAAGATTTTT
ATATCTTTTTCTTCACTCAGTGAAGCAAGCCAGAGCCCATGTTTGTATGCCTGAGGTTGT
CTTAAAATTTTATCTGTAAACATGTATCTGATATACTATTTTTAATAAAAAGCTATATGA
AACAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               555-670, - strand, RNAz p=0.991963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-670, - strand, RNAz p=0.991963

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-726, gnl|bosTau2|chr11 (20597009-20596331)
               

               
               23-726, gnl|Hg17|chr2 (55686952-55686079)
               

               
               23-726, gnl|Mm7|chr11 (29172204-29172803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-726, gnl|bosTau2|chr11 (20597009-20596331)
               

               
               23-726, gnl|Hg17|chr2 (55686952-55686079)
               

               
               23-726, gnl|Mm7|chr11 (29172204-29172803)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ctl (0.306138)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.306138)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

	23-726, gnl\|bosTau2\|chr11 (20597009-20596331)
	23-726, gnl\|Hg17\|chr2 (55686952-55686079)
	23-726, gnl\|Mm7\|chr11 (29172204-29172803)

	ctl (0.306138)
	mgp (0.230681)
	sag (0.182715)
	fhi (0.169578)
	mga (0.160205)
	ste (0.135208)
	nmm (0.132802)
	ret (0.128733)