Non-Coding RNA Search

Ss1.1-Pig4-TMW8043D06.5

Sequence:


               
               AGCAAGTCTCTATGACTCTGTGACGTAGATACCATAATGCAGTCCTTAGGTTTGTCAGGA
GTTAAGTACTTTGTACTTGCTTAGAGCTTTGAAGGCTCTTGGTCTGTAATTGATCCCATT
TTATAGATGAGGAACCTGAGGCACAGAGAGATTAAGTGTTTGTCCAAGGTCTCACAGCTC
CTACAAGGCAAAGTTGGGGTTCATGTCCAGTCTGGCTCTTAGCCAACAAGCTTCACTATT
TCCCTAAGCAGTTGTGGCCCACGGGCAGGTTGTGATGGATTATTTGGAAAGTGGGAGGAG
AATGGAGAAGGTGGTGGCTTCACAAGGCTGGGCCTGAAAGGCTGATCCCTAATCTGAGGT
CTCTTCCTTTTTTAAAAAAAAAAAAAAAAGTGATAAAATATACATAGTATAAAATCAACC
ATTTTAATAATTTTTGAGGTGTACAGTCTATTGGCAGTAAATACTTTTCACATTGTTGTG
CAACCTTCACCCCCATCCATCTGAAACTGGCCCCATTAAACAGTGATTTCCCTGTTTCCT
GCTGTTCCCCCAGCCCCTGACAACTACGCTTCTACTTTCTATGAATTTGAATACCCTGGT
ACCTTACATATGTGGAATCATACACTATTTGTCCATTTGGGATTGGCTTGTTTTACATAG
CATAATGGCTCTAAGGGTGGATGCTTTTTAAAAAATTCTGTCATTTGAAATTCTTCTAGC
TAAAGTATAAGAAACCCAAGCTTATCTTTAACAGCCCTTTATAGTCATATCGAAGGGCTT
ATGATTATATTTTTTATTCTTTTTTTTTAATTTTAATTTTTTTGTCTTTTTAGGGCTGGG
AACCTCCATATGCCTCAGGTGTGGCCATAAAAAGACCAAAACCTAAAAGTTTGCTAATCT
AAGTGTGGAGCATGTAAAATAGTAAAACCATTTAAATAATTGAATAAGTTAACATTTTAA
GGCAATTTTAACATTTTCTGATTAATAGGTATTTCTTAATTCTTGCTGAATAACACTATA
AAAGTAGAGCCTTTATTATGATTAAGCTATTTTACATTTTTTTACCCTTTGGTGCTTCTA
AAATTATCCTAAAACATTTTCAATTTGCATTTTACTAACTCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAGTCTCTATGACTCTGTGACGTAGATACCATAATGCAGTCCTTAGGTTTGTCAGGA
GTTAAGTACTTTGTACTTGCTTAGAGCTTTGAAGGCTCTTGGTCTGTAATTGATCCCATT
TTATAGATGAGGAACCTGAGGCACAGAGAGATTAAGTGTTTGTCCAAGGTCTCACAGCTC
CTACAAGGCAAAGTTGGGGTTCATGTCCAGTCTGGCTCTTAGCCAACAAGCTTCACTATT
TCCCTAAGCAGTTGTGGCCCACGGGCAGGTTGTGATGGATTATTTGGAAAGTGGGAGGAG
AATGGAGAAGGTGGTGGCTTCACAAGGCTGGGCCTGAAAGGCTGATCCCTAATCTGAGGT
CTCTTCCTTTTTTAAAAAAAAAAAAAAAAGTGATAAAATATACATAGTATAAAATCAACC
ATTTTAATAATTTTTGAGGTGTACAGTCTATTGGCAGTAAATACTTTTCACATTGTTGTG
CAACCTTCACCCCCATCCATCTGAAACTGGCCCCATTAAACAGTGATTTCCCTGTTTCCT
GCTGTTCCCCCAGCCCCTGACAACTACGCTTCTACTTTCTATGAATTTGAATACCCTGGT
ACCTTACATATGTGGAATCATACACTATTTGTCCATTTGGGATTGGCTTGTTTTACATAG
CATAATGGCTCTAAGGGTGGATGCTTTTTAAAAAATTCTGTCATTTGAAATTCTTCTAGC
TAAAGTATAAGAAACCCAAGCTTATCTTTAACAGCCCTTTATAGTCATATCGAAGGGCTT
ATGATTATATTTTTTATTCTTTTTTTTTAATTTTAATTTTTTTGTCTTTTTAGGGCTGGG
AACCTCCATATGCCTCAGGTGTGGCCATAAAAAGACCAAAACCTAAAAGTTTGCTAATCT
AAGTGTGGAGCATGTAAAATAGTAAAACCATTTAAATAATTGAATAAGTTAACATTTTAA
GGCAATTTTAACATTTTCTGATTAATAGGTATTTCTTAATTCTTGCTGAATAACACTATA
AAAGTAGAGCCTTTATTATGATTAAGCTATTTTACATTTTTTTACCCTTTGGTGCTTCTA
AAATTATCCTAAAACATTTTCAATTTGCATTTTACTAACTCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-409, + strand, RNAz p=0.97805

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-409, + strand, RNAz p=0.97805

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               136-502, gnl|bosTau2|chr21 (1214708-1215080)
               

               
               136-502, gnl|Hg17|chr15 (76246693-76247004)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-502, gnl|bosTau2|chr21 (1214708-1215080)
               

               
               136-502, gnl|Hg17|chr15 (76246693-76247004)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	136-502, gnl\|bosTau2\|chr21 (1214708-1215080)
	136-502, gnl\|Hg17\|chr15 (76246693-76247004)