Non-Coding RNA Search

Ss1.1-Pig4-TMW8043E02.5

Sequence:


               
               TTTAAGAGATGAGAGAGGAAGGAATATATCATCTTTACGGCAAGTTGACTTGGTTCAGGT
CTAAAAATGAGATTTAGAACAAAATGCTAAAAAGACTCTTGACTGACTTGGTTCACTCCA
AGAAGAGTCTTAGCACCAAAACCCAGGTTAGTGAAAAAAACGTTTGATGAAGTTTGCTTG
GGTTCTTTTTAAAATAATGTGGATTCCAGTTTTTTCTAATCCATTCACATGTACATGATT
TTAAATCTGTGCTCCTGACGCGCATGGCAGAGCGGTCGTCACTTAGGCGCGTGGCGGGGG
GGCCCCAGGACCCTCCCGCAGTTCTCCGAGCCCAGCATACAAATGACTTTCGTGTTACTG
TGTTGTATTGACGTTCATCCGCAGCATTTAGAGTTTAGAAATGACGTTAAGGACCCTGGT
AAAAAGAAATAGTGGCCTAAGGCCAGTTATCATACAGTAAGATAACATGTTGGACATGAG
ATTGCTCGCAATCTAATCCCGCTCGAGGTCGAGAGCTAAGTGTCTTTGCTTTAGAAATTC
CCGTTTAAGTTAGTTTGCTCATTGCAGTTCAAAGCTGAGAAGGAATTAACTAACATTTAG
CCACCTTTCCCTCGCCCTTAGAGGAGGAGAATCTCGCTCTCAGCCTGAGCTCTGTTAAGA
AAAATCCTCTATCACAGATGCTGTCATTAAGATACCTGTGACATGATGGCGTCAGATGCT
CTCTTTGTGGTTGTAACCAAGTGAAACGCGTTTCTCATGTGGCTGAGACAGTCGGAGAGC
TTTGAGGGAGTCAGAAGCTCCTGGTTTCTCCTCTTTGTTTTTGGGGCCGTTGGGTTTGCT
TTTGGTTTTGTTTTCAACCCTAAGAAGGGGGCACCGGCTTTGGAAAGCGGAGCCTGCGGA
GTTGCAGGAGGCAGCGATGCGGTACAGGAAGCCTCCACTCGATCCCTGAAATCCAGCCAA
CGGTTGCTCTGACCCACAGCAATAGCGCAGGTTCTCACCACCAGCATTTGTACAGAGCAG
GGAATCCTGGTTTTAAGCCGATGGCTAGCATGGTGCGTGGGAGGAGATTCTGCTCTATGG
CAGCTGCAGGACCCCACATCTACAGCCTCTTTCCACTGCAAGACGGTAGAAACACATTCA
CTGCTTCAGGGTTCGAATCTGTGTGTCTTCTTGCGGCTCCATTTCTATCCAGTATGCTGT
AATTTTGATACATGCTGTATTTTCTTTCCGTGACTCAGTTTAAAAGGCTTGGGTTTTTTG
TTCAGCAAGCTGGCCATCCTGCCGCTGAATCTCCTTCCCTTCTGTGAGGTTTTAGAGCGC
AGCCCAGTCATTAGACTCCCTCTGTCTACTCAGTCCACACACATCTTCATCGTTTGCAAG
GTCTTACGGCTGTTAAAGAATCTTTATGAACCCGAAGATGATTTCTCGTGAAGTTGAATG
CAAATGTACTGTCATTCATAGTGTTTATATTAAAAAAAAAAAAAAATACCAGGAATCTTC
ACTTTTGCTACCTTGATATAGCATTGGGCTATCATGTAACATTGAAATACATCAATTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAGAGATGAGAGAGGAAGGAATATATCATCTTTACGGCAAGTTGACTTGGTTCAGGT
CTAAAAATGAGATTTAGAACAAAATGCTAAAAAGACTCTTGACTGACTTGGTTCACTCCA
AGAAGAGTCTTAGCACCAAAACCCAGGTTAGTGAAAAAAACGTTTGATGAAGTTTGCTTG
GGTTCTTTTTAAAATAATGTGGATTCCAGTTTTTTCTAATCCATTCACATGTACATGATT
TTAAATCTGTGCTCCTGACGCGCATGGCAGAGCGGTCGTCACTTAGGCGCGTGGCGGGGG
GGCCCCAGGACCCTCCCGCAGTTCTCCGAGCCCAGCATACAAATGACTTTCGTGTTACTG
TGTTGTATTGACGTTCATCCGCAGCATTTAGAGTTTAGAAATGACGTTAAGGACCCTGGT
AAAAAGAAATAGTGGCCTAAGGCCAGTTATCATACAGTAAGATAACATGTTGGACATGAG
ATTGCTCGCAATCTAATCCCGCTCGAGGTCGAGAGCTAAGTGTCTTTGCTTTAGAAATTC
CCGTTTAAGTTAGTTTGCTCATTGCAGTTCAAAGCTGAGAAGGAATTAACTAACATTTAG
CCACCTTTCCCTCGCCCTTAGAGGAGGAGAATCTCGCTCTCAGCCTGAGCTCTGTTAAGA
AAAATCCTCTATCACAGATGCTGTCATTAAGATACCTGTGACATGATGGCGTCAGATGCT
CTCTTTGTGGTTGTAACCAAGTGAAACGCGTTTCTCATGTGGCTGAGACAGTCGGAGAGC
TTTGAGGGAGTCAGAAGCTCCTGGTTTCTCCTCTTTGTTTTTGGGGCCGTTGGGTTTGCT
TTTGGTTTTGTTTTCAACCCTAAGAAGGGGGCACCGGCTTTGGAAAGCGGAGCCTGCGGA
GTTGCAGGAGGCAGCGATGCGGTACAGGAAGCCTCCACTCGATCCCTGAAATCCAGCCAA
CGGTTGCTCTGACCCACAGCAATAGCGCAGGTTCTCACCACCAGCATTTGTACAGAGCAG
GGAATCCTGGTTTTAAGCCGATGGCTAGCATGGTGCGTGGGAGGAGATTCTGCTCTATGG
CAGCTGCAGGACCCCACATCTACAGCCTCTTTCCACTGCAAGACGGTAGAAACACATTCA
CTGCTTCAGGGTTCGAATCTGTGTGTCTTCTTGCGGCTCCATTTCTATCCAGTATGCTGT
AATTTTGATACATGCTGTATTTTCTTTCCGTGACTCAGTTTAAAAGGCTTGGGTTTTTTG
TTCAGCAAGCTGGCCATCCTGCCGCTGAATCTCCTTCCCTTCTGTGAGGTTTTAGAGCGC
AGCCCAGTCATTAGACTCCCTCTGTCTACTCAGTCCACACACATCTTCATCGTTTGCAAG
GTCTTACGGCTGTTAAAGAATCTTTATGAACCCGAAGATGATTTCTCGTGAAGTTGAATG
CAAATGTACTGTCATTCATAGTGTTTATATTAAAAAAAAAAAAAAATACCAGGAATCTTC
ACTTTTGCTACCTTGATATAGCATTGGGCTATCATGTAACATTGAAATACATCAATTTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1384-1539, - strand, RNAz p=0.654786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1384-1539, - strand, RNAz p=0.654786

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1560, gnl|bosTau2|chr16 (18266362-18267938)
               

               
               1-1560, gnl|Hg17|chr1 (241196808-241198354)
               

               
               1-1560, gnl|Mm7|chr1 (178229847-178231335)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1560, gnl|bosTau2|chr16 (18266362-18267938)
               

               
               1-1560, gnl|Hg17|chr1 (241196808-241198354)
               

               
               1-1560, gnl|Mm7|chr1 (178229847-178231335)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pla (0.534688)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.534688)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)

	1-1560, gnl\|bosTau2\|chr16 (18266362-18267938)
	1-1560, gnl\|Hg17\|chr1 (241196808-241198354)
	1-1560, gnl\|Mm7\|chr1 (178229847-178231335)

	pla (0.534688)
	cbe (0.239234)
	jca (0.22792)
	tes (0.207814)
	spl (0.143184)
	cst (0.140036)
	ssp (0.13552)
	sug (0.127291)