Ss1.1-Pig4-TMW8043E18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCTACAGCAGATGCAATTCCAAGTAATTTATTGAGGGATGCTGTGAAAAATGGGGATT ATATTACTGTGAAGGTTGCGCTTAATTCAAGTGAAGAGTATAACCTGGATCAAGAGGACG CGAGCGGGATGACGCTGGTGATGCTCGCCGCGGCCGGGGGGCAGGACGACCTGCTGCGGC TGCTGCTCCGAAAGGGAGCCAAGGTGAACGGCCGGCAGAAGAACGGGACCACGGCGCTCA TCCACGCCGCCGAGAAGAACTTTTTAACCACAGTGGCGATTCTCTTGGAAGCGGGAGCGT TTGTAAACGTCCAGCAGAGCAACGGCGAGACAGCTCTCATGAAGGCCTGCAAGCGGGGGA ACTCAGACATCGTGCGGCTTGTGATAGAGCGCGGGGCGGACTGCAACGTCCTGTCAAAGC ACCAGAACAGCGCGCTGCACTTCGCGAAGCAGAGCAACAACGTGCTGGTCTACGACCTGC TCAGGAGTCACCTGGAGACACTTTCGAGAGTGGCGGAAGAAACCATCAAGGACTATTTTG AAGCTCGTCTGGCTCTCCTAGAGCCGGTTTTCCCAATAGCATGTCACCGCCTCTGTGAGG GGCCGGATTTTTCAACAGACTTCCATTACAGACCCCCACAGAACATACCGGAAGGCTCCG GCATCCTGCTGTTCATTTTCCACGCAAACTTTTTGGGTAAAGAGGTTATTGCTCGCCTCT GTGGACCATGCAGTGTGCAAGCTGTCGTTTTAAATGACAAATTTCAACTTCCTGTTTTTC TGGACAGTCACTTCGTGTACTCCTTCAGCCCTGCCGCGGGCCTCAATAAACTCTTCATAA GGTTGACAGAAGCGCCCTCCGCTAAGGTGAAGTTACTCATAGGTGCATACCGCGTGCAGC TGCAATGACCAAGCAGAGTTGGGAAAGTTATTTTCGAACCTATTTCTAAACACTCTTTGA AGCAGTTTAGAATTCTGATTCTGGCACAGCTCACACTTTTCAAATGTCAGGTTTCTAATT TCTGTGCAAGGTGGGACCCAGTGGGTCTAAGCTGCTCCACACACAAGCAGTGTCCTGAGA CCTCCGTGTTGCGTCCAGACTGTATGTTCATGTATTTCCACAATGTGGAGTGGTACATAC AAGGATTATTTAACAAAATTAAAACTTTTCTAACTTCAAAGTTTTTTATAAGCCCTATTG AATTACTGAATTTTTGTGTTTATTTAAAAAAAAAAAAAAAAATCCAGTGTGGGAGTTGCC ACTGTGGCTTCGCAGAAACGAACCCAACTAGTAGCCGTGGGGCATGCAGTTTTGATCCCT GGCCCTGCTCAGTGGGTTAAGGATTCGGTGTTGCTGTGGCTGTGACCTAGGCCAGCAGCT GTAGCCCAGATCAGACCCGCTAGCCTGGCAGTTTCCATGTGCCTCTGGTGTGCCCCGCCC ACCCCACCCAGTGGGCGCATCACATTAAAGCTACCTGTGCCCCAAGTTAGGGTGTGACTT GGCAGCCCCGAAGGACTTAAACTAAGGTGGGGGCGGGTTTGAGGGAGGAGGGTTTGATCT ATTCCCAAGTTGGAGGTGACAGCTCTGTGAATTTGCAGTTGTCCTTTACCGTCTGAAAAC AGTATCCAGCAGAATCTAACTTGGAGCAGAAGAAACGCCAGGGCAGGACAGGACATGAAG GAAGTAAGGTATGAACTGGACCGGATCTGTGTGCTTGCTCTGAACACGGGAAGGCCAGCC ACACGTGTGTCCTGGGGAGAGCTCCCCCAGGTCGAAGGCTTAGCTCGTAACCAAGCTGTC TGCAGTGGGGAAGCGCGTGAAGCTGCTGAGCTGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCTACAGCAGATGCAATTCCAAGTAATTTATTGAGGGATGCTGTGAAAAATGGGGATT ATATTACTGTGAAGGTTGCGCTTAATTCAAGTGAAGAGTATAACCTGGATCAAGAGGACG CGAGCGGGATGACGCTGGTGATGCTCGCCGCGGCCGGGGGGCAGGACGACCTGCTGCGGC TGCTGCTCCGAAAGGGAGCCAAGGTGAACGGCCGGCAGAAGAACGGGACCACGGCGCTCA TCCACGCCGCCGAGAAGAACTTTTTAACCACAGTGGCGATTCTCTTGGAAGCGGGAGCGT TTGTAAACGTCCAGCAGAGCAACGGCGAGACAGCTCTCATGAAGGCCTGCAAGCGGGGGA ACTCAGACATCGTGCGGCTTGTGATAGAGCGCGGGGCGGACTGCAACGTCCTGTCAAAGC ACCAGAACAGCGCGCTGCACTTCGCGAAGCAGAGCAACAACGTGCTGGTCTACGACCTGC TCAGGAGTCACCTGGAGACACTTTCGAGAGTGGCGGAAGAAACCATCAAGGACTATTTTG AAGCTCGTCTGGCTCTCCTAGAGCCGGTTTTCCCAATAGCATGTCACCGCCTCTGTGAGG GGCCGGATTTTTCAACAGACTTCCATTACAGACCCCCACAGAACATACCGGAAGGCTCCG GCATCCTGCTGTTCATTTTCCACGCAAACTTTTTGGGTAAAGAGGTTATTGCTCGCCTCT GTGGACCATGCAGTGTGCAAGCTGTCGTTTTAAATGACAAATTTCAACTTCCTGTTTTTC TGGACAGTCACTTCGTGTACTCCTTCAGCCCTGCCGCGGGCCTCAATAAACTCTTCATAA GGTTGACAGAAGCGCCCTCCGCTAAGGTGAAGTTACTCATAGGTGCATACCGCGTGCAGC TGCAATGACCAAGCAGAGTTGGGAAAGTTATTTTCGAACCTATTTCTAAACACTCTTTGA AGCAGTTTAGAATTCTGATTCTGGCACAGCTCACACTTTTCAAATGTCAGGTTTCTAATT TCTGTGCAAGGTGGGACCCAGTGGGTCTAAGCTGCTCCACACACAAGCAGTGTCCTGAGA CCTCCGTGTTGCGTCCAGACTGTATGTTCATGTATTTCCACAATGTGGAGTGGTACATAC AAGGATTATTTAACAAAATTAAAACTTTTCTAACTTCAAAGTTTTTTATAAGCCCTATTG AATTACTGAATTTTTGTGTTTATTTAAAAAAAAAAAAAAAAATCCAGTGTGGGAGTTGCC ACTGTGGCTTCGCAGAAACGAACCCAACTAGTAGCCGTGGGGCATGCAGTTTTGATCCCT GGCCCTGCTCAGTGGGTTAAGGATTCGGTGTTGCTGTGGCTGTGACCTAGGCCAGCAGCT GTAGCCCAGATCAGACCCGCTAGCCTGGCAGTTTCCATGTGCCTCTGGTGTGCCCCGCCC ACCCCACCCAGTGGGCGCATCACATTAAAGCTACCTGTGCCCCAAGTTAGGGTGTGACTT GGCAGCCCCGAAGGACTTAAACTAAGGTGGGGGCGGGTTTGAGGGAGGAGGGTTTGATCT ATTCCCAAGTTGGAGGTGACAGCTCTGTGAATTTGCAGTTGTCCTTTACCGTCTGAAAAC AGTATCCAGCAGAATCTAACTTGGAGCAGAAGAAACGCCAGGGCAGGACAGGACATGAAG GAAGTAAGGTATGAACTGGACCGGATCTGTGTGCTTGCTCTGAACACGGGAAGGCCAGCC ACACGTGTGTCCTGGGGAGAGCTCCCCCAGGTCGAAGGCTTAGCTCGTAACCAAGCTGTC TGCAGTGGGGAAGCGCGTGAAGCTGCTGAGCTGCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 115-257, gnl|bosTau2|chr12 (20482017-20482159) | |
| 115-257, gnl|canFam2|chr25 (21389882-21389728) | |
| 115-257, gnl|danRer3|chrUn (116988584-116988739) | |
| 115-257, gnl|dasNov1|scaffold_32495 (241-394) | |
| 115-257, gnl|echTel1|scaffold_268374 (9735-9581) | |
| 115-257, gnl|fr1|chrUn (207283371-207283516) | |
| 115-257, gnl|galGal2|chr1 (171189288-171189143) | |
| 115-257, gnl|hg17|chr13 (19133827-19133981) | |
| 115-257, gnl|Hg17|chr13 (19133836-19133978) | |
| 115-257, gnl|loxAfr1|scaffold_112217 (5004-5158) | |
| 115-257, gnl|mm7|chr14 (51556075-51556227) | |
| 115-257, gnl|Mm7|chr14 (51556082-51556224) | |
| 115-257, gnl|monDom2|scaffold_15 (27215185-27215336) | |
| 115-257, gnl|panTro1|chr14 (18019628-18019782) | |
| 115-257, gnl|rheMac2|chr17 (1789120-1788966) | |
| 115-257, gnl|rn3|chr15 (35701234-35701386) | |
| 115-257, gnl|tetNig1|chr2 (17740613-17740469) | |
| 115-257, gnl|xenTro1|scaffold_327 (732103-732248) | |
| 343-499, gnl|bosTau2|chr12 (20484218-20484374) | |
| 343-499, gnl|canFam2|chr25 (21385344-21385171) | |
| 343-499, gnl|danRer3|chrUn (116989643-116989805) | |
| 343-499, gnl|dasNov1|scaffold_32495 (8318-8490) | |
| 343-499, gnl|echTel1|scaffold_302090 (2177-2350) | |
| 343-499, gnl|fr1|chrUn (207283812-207283976) | |
| 343-499, gnl|galGal2|chr1 (171186706-171186535) | |
| 343-499, gnl|hg17|chr13 (19138557-19138730) | |
| 343-499, gnl|Hg17|chr13 (19138563-19138719) | |
| 343-499, gnl|loxAfr1|scaffold_54037 (4002-4175) | |
| 343-499, gnl|mm7|chr14 (51558618-51558791) | |
| 343-499, gnl|Mm7|chr14 (51558624-51558780) | |
| 343-499, gnl|monDom2|scaffold_15 (27224355-27224528) | |
| 343-499, gnl|panTro1|chr14_random (4718907-4718734) | |
| 343-499, gnl|rheMac2|chr17 (1784437-1784264) | |
| 343-499, gnl|rn3|chr15 (35703948-35704121) | |
| 343-499, gnl|tetNig1|chr2 (17740162-17739992) | |
| 343-499, gnl|xenTro1|scaffold_327 (733821-733987) | |
| 653-792, gnl|bosTau2|chr12 (20487703-20487842) | |
| 653-792, gnl|canFam2|chr25 (21378094-21377985) | |
| 653-792, gnl|danRer3|chrUn (116991636-116991731) | |
| 653-792, gnl|dasNov1|scaffold_32495 (10417-10526) | |
| 653-792, gnl|echTel1|scaffold_302090 (4535-4641) | |
| 653-792, gnl|fr1|chrUn (207284337-207284438) | |
| 653-792, gnl|galGal2|chr1 (171183695-171183590) | |
| 653-792, gnl|hg17|chr13 (19142360-19142469) | |
| 653-792, gnl|Hg17|chr13 (19142374-19142515) | |
| 653-792, gnl|loxAfr1|scaffold_62953 (534-643) | |
| 653-792, gnl|mm7|chr14 (51563331-51563433) | |
| 653-792, gnl|Mm7|chr14 (51563338-51563477) | |
| 653-792, gnl|monDom2|scaffold_15 (27246805-27246917) | |
| 653-792, gnl|oryCun1|scaffold_179192 (22916-22810) | |
| 653-792, gnl|panTro1|chr14_random (4715103-4714994) | |
| 653-792, gnl|rn3|chr15 (35708352-35708461) | |
| 653-792, gnl|tetNig1|chr2 (17739611-17739510) | |
| 653-792, gnl|xenTro1|scaffold_327 (735233-735340) | |
| 865-1016, gnl|bosTau2|chr12 (20489068-20489213) | |
| 865-1016, gnl|Hg17|chr13 (19143972-19144114) | |
| 865-1016, gnl|Mm7|chr14 (51564848-51565005) | |
| 1069-1204, gnl|bosTau2|chr12 (20489313-20489446) | |
| 1069-1204, gnl|Mm7|chr14 (51565049-51565172) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-257, gnl|bosTau2|chr12 (20482017-20482159) | |
| 115-257, gnl|canFam2|chr25 (21389882-21389728) | |
| 115-257, gnl|danRer3|chrUn (116988584-116988739) | |
| 115-257, gnl|dasNov1|scaffold_32495 (241-394) | |
| 115-257, gnl|echTel1|scaffold_268374 (9735-9581) | |
| 115-257, gnl|fr1|chrUn (207283371-207283516) | |
| 115-257, gnl|galGal2|chr1 (171189288-171189143) | |
| 115-257, gnl|hg17|chr13 (19133827-19133981) | |
| 115-257, gnl|Hg17|chr13 (19133836-19133978) | |
| 115-257, gnl|loxAfr1|scaffold_112217 (5004-5158) | |
| 115-257, gnl|mm7|chr14 (51556075-51556227) | |
| 115-257, gnl|Mm7|chr14 (51556082-51556224) | |
| 115-257, gnl|monDom2|scaffold_15 (27215185-27215336) | |
| 115-257, gnl|panTro1|chr14 (18019628-18019782) | |
| 115-257, gnl|rheMac2|chr17 (1789120-1788966) | |
| 115-257, gnl|rn3|chr15 (35701234-35701386) | |
| 115-257, gnl|tetNig1|chr2 (17740613-17740469) | |
| 115-257, gnl|xenTro1|scaffold_327 (732103-732248) | |
| 343-499, gnl|bosTau2|chr12 (20484218-20484374) | |
| 343-499, gnl|canFam2|chr25 (21385344-21385171) | |
| 343-499, gnl|danRer3|chrUn (116989643-116989805) | |
| 343-499, gnl|dasNov1|scaffold_32495 (8318-8490) | |
| 343-499, gnl|echTel1|scaffold_302090 (2177-2350) | |
| 343-499, gnl|fr1|chrUn (207283812-207283976) | |
| 343-499, gnl|galGal2|chr1 (171186706-171186535) | |
| 343-499, gnl|hg17|chr13 (19138557-19138730) | |
| 343-499, gnl|Hg17|chr13 (19138563-19138719) | |
| 343-499, gnl|loxAfr1|scaffold_54037 (4002-4175) | |
| 343-499, gnl|mm7|chr14 (51558618-51558791) | |
| 343-499, gnl|Mm7|chr14 (51558624-51558780) | |
| 343-499, gnl|monDom2|scaffold_15 (27224355-27224528) | |
| 343-499, gnl|panTro1|chr14_random (4718907-4718734) | |
| 343-499, gnl|rheMac2|chr17 (1784437-1784264) | |
| 343-499, gnl|rn3|chr15 (35703948-35704121) | |
| 343-499, gnl|tetNig1|chr2 (17740162-17739992) | |
| 343-499, gnl|xenTro1|scaffold_327 (733821-733987) | |
| 653-792, gnl|bosTau2|chr12 (20487703-20487842) | |
| 653-792, gnl|canFam2|chr25 (21378094-21377985) | |
| 653-792, gnl|danRer3|chrUn (116991636-116991731) | |
| 653-792, gnl|dasNov1|scaffold_32495 (10417-10526) | |
| 653-792, gnl|echTel1|scaffold_302090 (4535-4641) | |
| 653-792, gnl|fr1|chrUn (207284337-207284438) | |
| 653-792, gnl|galGal2|chr1 (171183695-171183590) | |
| 653-792, gnl|hg17|chr13 (19142360-19142469) | |
| 653-792, gnl|Hg17|chr13 (19142374-19142515) | |
| 653-792, gnl|loxAfr1|scaffold_62953 (534-643) | |
| 653-792, gnl|mm7|chr14 (51563331-51563433) | |
| 653-792, gnl|Mm7|chr14 (51563338-51563477) | |
| 653-792, gnl|monDom2|scaffold_15 (27246805-27246917) | |
| 653-792, gnl|oryCun1|scaffold_179192 (22916-22810) | |
| 653-792, gnl|panTro1|chr14_random (4715103-4714994) | |
| 653-792, gnl|rn3|chr15 (35708352-35708461) | |
| 653-792, gnl|tetNig1|chr2 (17739611-17739510) | |
| 653-792, gnl|xenTro1|scaffold_327 (735233-735340) | |
| 865-1016, gnl|bosTau2|chr12 (20489068-20489213) | |
| 865-1016, gnl|Hg17|chr13 (19143972-19144114) | |
| 865-1016, gnl|Mm7|chr14 (51564848-51565005) | |
| 1069-1204, gnl|bosTau2|chr12 (20489313-20489446) | |
| 1069-1204, gnl|Mm7|chr14 (51565049-51565172) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| clu (0.717875) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ova (0.129132) | |
| ret (0.128733) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |