Ss1.1-Pig4-TMW8043E20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGAGGGGGGGCAAGGAGGTGGCAGCTGAGCGAGGAGGCGGCGCGGAGGCCGAGGACT CACGCCTGGACCAATCCCGCGTCCCGGGCCGCAAGCCCCGATCCTGCCGCGCCCCGAGAG GCAAGACCGGCCGGATGGGCCGCTGAGCCCGGATCGGGGACCGTGTGGAGCCCCCTGGAG CTAAAATCAGGATGTTCCGCTTCATGAGGGACGTGGAGCCTGAGGACCCCATGTTCTTGA TGGACCCCTTTGCCATTCACCGTCAGCACATGAACCGGATGTTGTCGGGTGGCTTTGGAT ACAGCCCCTTCCTCAGCATCACAGATGGCAGCATGCCAGGGACCAGGCCTGCCAGCCGCA GGATGCAGCCTGGGGCCGTCTCTCCCTTTGGGATGCTGGGAATGTCGGGCGGCTTCATGG ACATGTTTGGGATGATGAACGACATGATTGGGAACATGGAGCACATGACAGCCGGAGGTA ATTGCCAGACCTTTTCGTCCTCCACTGTCATCTCCTACTCCAACACGGGCGACGGTGCCC CCAAGGTCTACCAGGAGACTTCCGAGATGCGCTCGGCCCCAGGCGGGATCCGGGAGACTC GGAGGACCGTCCGGGACTCGGACAGCGGGCTGGAGCAGATGTCCATCGGGCATCACATCC GAGACCGGGCTCACATCCTGCAGCGCTCCCGAAACCACCGCACAGGGGACCAGGAGGAGC GGCAGGACTACATCAACCTGGATGAGAGTGAAGCCGCAGCATTTGACGATGAGTGGCGGA GGGAGACCTCCCGATACCGGCAGCAGCGCCCTCTGGAATTTCGCCGGCATGAGGCTTCAG GGGGCGGGGGACGAAGGGCTGAGGGGCCTCCCCGCCTGGCTATACAGGGCCCCGAGGACT CCCCATCCCGACAGCCCCGCCGCTATGACTGGTGAGGGCCCTGAGCCCTCAGCCTCTCTT GGACAGGCTGAGAGGCTGAGAAGTCATCCCCTGAAATAACTTTTCCTCTTCAGCTCCCAC TCCCAATTTAATATTAAATTAACAGGCAAGCTGGCCCCCACCTCTCCCTGGGGGTCTCAG GGAGGACCTCTCACTGCCCCTTTCCCCACTTTTTCCTGCGTTAATCTCCTTACCATGATG ATTCCACCCCTGTATCCGCTAACTTGATTTTTTCACTCTGCTGCTCCATCTCGGAACCTC CTCACCTTCCCTGTTCCACCCCTGCCATGCATTGAAGGGGCTTTGGGGGCGAGCTCTGGG TTTAGGGGCTTCGTCCACCCCTCAGCGACCCTGGATCTTTGCCCACCTCCCCCTCAGATT CCCCGCTGCAGGGGCCATTGCCCACATCCAGGGCTGCATGTGGAAGGAGAGGACGGTTCC CAACCCTTCCTCCCTTCCCACCCCCTGCACATCACAAAGCTCTTCCCCATGCCCTTCTCT GCCTTTATTTTTTTGATTTGTGCAAGTTGTAACTAACTAGGTGTTTATGGAATAAAGGAG AATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGAGGGGGGGCAAGGAGGTGGCAGCTGAGCGAGGAGGCGGCGCGGAGGCCGAGGACT CACGCCTGGACCAATCCCGCGTCCCGGGCCGCAAGCCCCGATCCTGCCGCGCCCCGAGAG GCAAGACCGGCCGGATGGGCCGCTGAGCCCGGATCGGGGACCGTGTGGAGCCCCCTGGAG CTAAAATCAGGATGTTCCGCTTCATGAGGGACGTGGAGCCTGAGGACCCCATGTTCTTGA TGGACCCCTTTGCCATTCACCGTCAGCACATGAACCGGATGTTGTCGGGTGGCTTTGGAT ACAGCCCCTTCCTCAGCATCACAGATGGCAGCATGCCAGGGACCAGGCCTGCCAGCCGCA GGATGCAGCCTGGGGCCGTCTCTCCCTTTGGGATGCTGGGAATGTCGGGCGGCTTCATGG ACATGTTTGGGATGATGAACGACATGATTGGGAACATGGAGCACATGACAGCCGGAGGTA ATTGCCAGACCTTTTCGTCCTCCACTGTCATCTCCTACTCCAACACGGGCGACGGTGCCC CCAAGGTCTACCAGGAGACTTCCGAGATGCGCTCGGCCCCAGGCGGGATCCGGGAGACTC GGAGGACCGTCCGGGACTCGGACAGCGGGCTGGAGCAGATGTCCATCGGGCATCACATCC GAGACCGGGCTCACATCCTGCAGCGCTCCCGAAACCACCGCACAGGGGACCAGGAGGAGC GGCAGGACTACATCAACCTGGATGAGAGTGAAGCCGCAGCATTTGACGATGAGTGGCGGA GGGAGACCTCCCGATACCGGCAGCAGCGCCCTCTGGAATTTCGCCGGCATGAGGCTTCAG GGGGCGGGGGACGAAGGGCTGAGGGGCCTCCCCGCCTGGCTATACAGGGCCCCGAGGACT CCCCATCCCGACAGCCCCGCCGCTATGACTGGTGAGGGCCCTGAGCCCTCAGCCTCTCTT GGACAGGCTGAGAGGCTGAGAAGTCATCCCCTGAAATAACTTTTCCTCTTCAGCTCCCAC TCCCAATTTAATATTAAATTAACAGGCAAGCTGGCCCCCACCTCTCCCTGGGGGTCTCAG GGAGGACCTCTCACTGCCCCTTTCCCCACTTTTTCCTGCGTTAATCTCCTTACCATGATG ATTCCACCCCTGTATCCGCTAACTTGATTTTTTCACTCTGCTGCTCCATCTCGGAACCTC CTCACCTTCCCTGTTCCACCCCTGCCATGCATTGAAGGGGCTTTGGGGGCGAGCTCTGGG TTTAGGGGCTTCGTCCACCCCTCAGCGACCCTGGATCTTTGCCCACCTCCCCCTCAGATT CCCCGCTGCAGGGGCCATTGCCCACATCCAGGGCTGCATGTGGAAGGAGAGGACGGTTCC CAACCCTTCCTCCCTTCCCACCCCCTGCACATCACAAAGCTCTTCCCCATGCCCTTCTCT GCCTTTATTTTTTTGATTTGTGCAAGTTGTAACTAACTAGGTGTTTATGGAATAAAGGAG AATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1167-1470, - strand, RNAz p=0.999852 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1167-1470, - strand, RNAz p=0.999852 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 7-163, gnl|bosTau2|chr5 (60480169-60480326) | |
| 7-163, gnl|canFam2|chr27 (41312842-41312586) | |
| 7-163, gnl|dasNov1|scaffold_11956 (45595-45853) | |
| 7-163, gnl|echTel1|scaffold_222698 (4071-3811) | |
| 7-163, gnl|hg17|chr12 (6732367-6732623) | |
| 7-163, gnl|Hg17|chr12 (6732524-6732366) | |
| 7-163, gnl|loxAfr1|scaffold_52700 (1084-824) | |
| 7-163, gnl|mm7|chr6 (124957978-124957728) | |
| 7-163, gnl|Mm7|chr6 (124957824-124957977) | |
| 7-163, gnl|monDom2|scaffold_31 (15152601-15152905) | |
| 7-163, gnl|oryCun1|scaffold_207170 (87712-87947) | |
| 7-163, gnl|panTro1|chr10 (7269202-7269457) | |
| 7-163, gnl|rheMac2|chr11 (6932184-6932440) | |
| 7-163, gnl|rn3|chr4 (161303581-161303331) | |
| 242-368, gnl|bosTau2|chr5 (60481247-60481373) | |
| 242-368, gnl|canFam2|chr27 (41313866-41313740) | |
| 242-368, gnl|dasNov1|scaffold_11956 (45389-45516) | |
| 242-368, gnl|echTel1|scaffold_232853 (6525-6652) | |
| 242-368, gnl|Hg17|chr12 (6731481-6731355) | |
| 242-368, gnl|hg17|chr8 (102305829-102305928) | |
| 242-368, gnl|loxAfr1|scaffold_93771 (8795-8903) | |
| 242-368, gnl|mm7|chr6 (124958930-124958803) | |
| 242-368, gnl|Mm7|chr6 (124958802-124958928) | |
| 242-368, gnl|monDom2|scaffold_12 (63476242-63476369) | |
| 242-368, gnl|oryCun1|scaffold_207170 (86764-86891) | |
| 242-368, gnl|panTro1|chr10 (7268207-7268329) | |
| 242-368, gnl|rheMac2|chr8 (103737081-103737173) | |
| 242-368, gnl|rn3|chr4 (161304506-161304380) | |
| 458-587, gnl|bosTau2|chr5 (60482643-60482772) | |
| 458-587, gnl|canFam2|chr27 (41315379-41315249) | |
| 458-587, gnl|canFam2|chr27 (41315383-41315239) | |
| 458-587, gnl|danRer3|chr16 (32015582-32015447) | |
| 458-587, gnl|dasNov1|scaffold_11956 (45170-45300) | |
| 458-587, gnl|dasNov1|scaffold_139484 (679-823) | |
| 458-587, gnl|echTel1|scaffold_222698 (7496-7352) | |
| 458-587, gnl|echTel1|scaffold_232853 (6308-6438) | |
| 458-587, gnl|fr1|chrUn (74953804-74953673) | |
| 458-587, gnl|galGal2|chr1 (71256715-71256854) | |
| 458-587, gnl|hg17|chr12 (6729600-6729745) | |
| 458-587, gnl|Hg17|chr12 (6729733-6729604) | |
| 458-587, gnl|hg17|chr8 (102305617-102305745) | |
| 458-587, gnl|loxAfr1|scaffold_52700 (4437-4307) | |
| 458-587, gnl|loxAfr1|scaffold_52700 (4441-4297) | |
| 458-587, gnl|mm7|chr6 (124960812-124960682) | |
| 458-587, gnl|mm7|chr6 (124960816-124960679) | |
| 458-587, gnl|Mm7|chr6 (124960681-124960810) | |
| 458-587, gnl|monDom2|scaffold_12 (63476013-63476153) | |
| 458-587, gnl|monDom2|scaffold_31 (15149752-15149892) | |
| 458-587, gnl|oryCun1|scaffold_207170 (84176-84306) | |
| 458-587, gnl|oryCun1|scaffold_207170 (84172-84309) | |
| 458-587, gnl|panTro1|chr10 (7266425-7266555) | |
| 458-587, gnl|panTro1|chr10 (7266421-7266555) | |
| 458-587, gnl|rheMac2|chr11 (6929161-6929306) | |
| 458-587, gnl|rheMac2|chr8 (103736869-103736997) | |
| 458-587, gnl|rn3|chr4 (161306243-161306113) | |
| 458-587, gnl|rn3|chr4 (161306247-161306110) | |
| 458-587, gnl|tetNig1|chrUn_random (89316511-89316366) | |
| 458-587, gnl|xenTro1|scaffold_991 (200937-201077) | |
| 748-961, gnl|bosTau2|chr5 (60483797-60484010) | |
| 748-961, gnl|Hg17|chr12 (6728409-6728203) | |
| 748-961, gnl|Mm7|chr6 (124961624-124961830) | |
| 1092-1513, gnl|bosTau2|chr3 (78253718-78253297) | |
| 1092-1513, gnl|Hg17|chr12 (6727837-6727423) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-163, gnl|bosTau2|chr5 (60480169-60480326) | |
| 7-163, gnl|canFam2|chr27 (41312842-41312586) | |
| 7-163, gnl|dasNov1|scaffold_11956 (45595-45853) | |
| 7-163, gnl|echTel1|scaffold_222698 (4071-3811) | |
| 7-163, gnl|hg17|chr12 (6732367-6732623) | |
| 7-163, gnl|Hg17|chr12 (6732524-6732366) | |
| 7-163, gnl|loxAfr1|scaffold_52700 (1084-824) | |
| 7-163, gnl|mm7|chr6 (124957978-124957728) | |
| 7-163, gnl|Mm7|chr6 (124957824-124957977) | |
| 7-163, gnl|monDom2|scaffold_31 (15152601-15152905) | |
| 7-163, gnl|oryCun1|scaffold_207170 (87712-87947) | |
| 7-163, gnl|panTro1|chr10 (7269202-7269457) | |
| 7-163, gnl|rheMac2|chr11 (6932184-6932440) | |
| 7-163, gnl|rn3|chr4 (161303581-161303331) | |
| 242-368, gnl|bosTau2|chr5 (60481247-60481373) | |
| 242-368, gnl|canFam2|chr27 (41313866-41313740) | |
| 242-368, gnl|dasNov1|scaffold_11956 (45389-45516) | |
| 242-368, gnl|echTel1|scaffold_232853 (6525-6652) | |
| 242-368, gnl|Hg17|chr12 (6731481-6731355) | |
| 242-368, gnl|hg17|chr8 (102305829-102305928) | |
| 242-368, gnl|loxAfr1|scaffold_93771 (8795-8903) | |
| 242-368, gnl|mm7|chr6 (124958930-124958803) | |
| 242-368, gnl|Mm7|chr6 (124958802-124958928) | |
| 242-368, gnl|monDom2|scaffold_12 (63476242-63476369) | |
| 242-368, gnl|oryCun1|scaffold_207170 (86764-86891) | |
| 242-368, gnl|panTro1|chr10 (7268207-7268329) | |
| 242-368, gnl|rheMac2|chr8 (103737081-103737173) | |
| 242-368, gnl|rn3|chr4 (161304506-161304380) | |
| 458-587, gnl|bosTau2|chr5 (60482643-60482772) | |
| 458-587, gnl|canFam2|chr27 (41315379-41315249) | |
| 458-587, gnl|canFam2|chr27 (41315383-41315239) | |
| 458-587, gnl|danRer3|chr16 (32015582-32015447) | |
| 458-587, gnl|dasNov1|scaffold_11956 (45170-45300) | |
| 458-587, gnl|dasNov1|scaffold_139484 (679-823) | |
| 458-587, gnl|echTel1|scaffold_222698 (7496-7352) | |
| 458-587, gnl|echTel1|scaffold_232853 (6308-6438) | |
| 458-587, gnl|fr1|chrUn (74953804-74953673) | |
| 458-587, gnl|galGal2|chr1 (71256715-71256854) | |
| 458-587, gnl|hg17|chr12 (6729600-6729745) | |
| 458-587, gnl|Hg17|chr12 (6729733-6729604) | |
| 458-587, gnl|hg17|chr8 (102305617-102305745) | |
| 458-587, gnl|loxAfr1|scaffold_52700 (4437-4307) | |
| 458-587, gnl|loxAfr1|scaffold_52700 (4441-4297) | |
| 458-587, gnl|mm7|chr6 (124960812-124960682) | |
| 458-587, gnl|mm7|chr6 (124960816-124960679) | |
| 458-587, gnl|Mm7|chr6 (124960681-124960810) | |
| 458-587, gnl|monDom2|scaffold_12 (63476013-63476153) | |
| 458-587, gnl|monDom2|scaffold_31 (15149752-15149892) | |
| 458-587, gnl|oryCun1|scaffold_207170 (84176-84306) | |
| 458-587, gnl|oryCun1|scaffold_207170 (84172-84309) | |
| 458-587, gnl|panTro1|chr10 (7266425-7266555) | |
| 458-587, gnl|panTro1|chr10 (7266421-7266555) | |
| 458-587, gnl|rheMac2|chr11 (6929161-6929306) | |
| 458-587, gnl|rheMac2|chr8 (103736869-103736997) | |
| 458-587, gnl|rn3|chr4 (161306243-161306113) | |
| 458-587, gnl|rn3|chr4 (161306247-161306110) | |
| 458-587, gnl|tetNig1|chrUn_random (89316511-89316366) | |
| 458-587, gnl|xenTro1|scaffold_991 (200937-201077) | |
| 748-961, gnl|bosTau2|chr5 (60483797-60484010) | |
| 748-961, gnl|Hg17|chr12 (6728409-6728203) | |
| 748-961, gnl|Mm7|chr6 (124961624-124961830) | |
| 1092-1513, gnl|bosTau2|chr3 (78253718-78253297) | |
| 1092-1513, gnl|Hg17|chr12 (6727837-6727423) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| clu (0.717875) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| cov (0.528611) | |
| fcc (0.39557) | |
| ese (0.379507) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| cty (0.31224) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cbr (0.127975) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| cov (0.528611) | |
| fcc (0.39557) | |
| ese (0.379507) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| cty (0.31224) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| eep (0.245128) | |
| cly (0.241284) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cbr (0.127975) | |
| jej (0.0989218) |