Ss1.1-Pig4-TMW8043F12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGACAGAATAAGAGATTTCCTCAGATTTACATCAAGATGGAAACCTTCTGCTTCAGGGT GTCCTTTTGGGTGGCCCTGTTGGGATGCGTAATCAGTGATAACCCTGAGAGCCACAGCAC AAATCTGAGCACTCACGTGGACGATTTCACCACATTTCGTGGAACAGAATTCAGTTTGGT GGTTACCACTCATCGACCCACGAATCTGGCCCTCCCCAGCAATGGCTCCATGCACAACTA CTGCCCACAGCAGACCAAGATTACTTCAGCTTTCAAATACATTAACACTGTGATATCGTG TACTATTTTCATCGTGGGAATGGTGGGGAATGCAACCCTGCTCAGGATCATTTACCAGAA CAAGTGCATGAGGAACGGCCCCAACGCGCTGATAGCCAGCCTTGCCCTTGGAGACCTCAT CTATGTGGTCATTGATCTCCCTATCAATGTATTTAAGCTGCTGGCTGGGCGCTGGCCCTT TGAGAACCATGACTTTGGCGTATTTCTCTGCAAGTTGTTCCCCTTTTTGCAGAAGTCCTC AGTGGGGATCACCGTCCTCAATCTCTGCGCTCTCAGTGTTGACAGGTACAGAGCAGTTGC CTCCTGGAGTCGTGTTCAGGGAATCGGGATTCCATTGGTCACAGCCATTGAGATTGTCTC CATCTGGATCCTTTCTTTTATCCTGGCCATCCCTGAAGCAATCGGCTTTGTCATGGTGCC CTTTGAATACAAGGGCGAAGAGCACAAAACCTGTATGCTCAATGCCACGTCAAAATTCAT GGAGTTCTATCAAGACGTAAAAGACTGGTGGCTGTTCGGGTTCTACTTCTGCATGCCCCT GGTGTGTACTGCCATCTTCTACACTCTCATGACTTGTGAGATGTTAAACAGAAGAAATGG AAGCCTGAGAATTGCCCTCAGTGAACACCTGAAACAGCGTCGAGAGGTGGCAAAAACAGT GTTCTGCCTGGTTGTAATTTTCGCTCTGTGCTGGTTCCCTCTTCATTTAAGCCGTATTTT GAAGAAAACCGTGTATGATGAGATGGACAAGAACCGATGTGAATTACTTAGTTTCCTGCT CCTCATGGACTATATTGGTATTAACTTGGCAACCATGAACTCATGTATAAACCCAATAGC TCTATATTTTGTGAGCAAGAAATTTAAAAATTGTTTCCAGTCTTGCCTCTGCTGCTGCTG TTACCAGTCCAAAAGTCTGATGACCTCAGTCCCCATGAATGGAACAAGCATCCAGTGGAA GAACCATGAACAAAACAACCATAACACTGAGAGGAGCAGCCACAAGGACAGTATAAACTA AATCTCTAAAGGAACATTCATCCATGTACATCAAACCTTATTGGAGGGGAAAAAAAAATC ACACAGCAACTGTGTCTCTGGAAATCTCTCCTTCCATCCTTCTCCCATGATCAGTCCCAG CTTCAGAAAAATACTTTCCAAAACAATGAAGGTTGACTGGCTTATACCTACAAATTCAAC AAATCTTATTACTTCTTTGATGTATCTAATTTACATACTCTGCATGTTATATTCAGCCCT AAAACAATGGTGATGGTGGATGTCAGCAAGGGGAAGGGAGATTACTCTGTTAAACCAGAA GATTATTTACTACCGTTGCATGAAAATAGAGTTTTTGAGTACATGGCTAGCTTTACATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGACAGAATAAGAGATTTCCTCAGATTTACATCAAGATGGAAACCTTCTGCTTCAGGGT GTCCTTTTGGGTGGCCCTGTTGGGATGCGTAATCAGTGATAACCCTGAGAGCCACAGCAC AAATCTGAGCACTCACGTGGACGATTTCACCACATTTCGTGGAACAGAATTCAGTTTGGT GGTTACCACTCATCGACCCACGAATCTGGCCCTCCCCAGCAATGGCTCCATGCACAACTA CTGCCCACAGCAGACCAAGATTACTTCAGCTTTCAAATACATTAACACTGTGATATCGTG TACTATTTTCATCGTGGGAATGGTGGGGAATGCAACCCTGCTCAGGATCATTTACCAGAA CAAGTGCATGAGGAACGGCCCCAACGCGCTGATAGCCAGCCTTGCCCTTGGAGACCTCAT CTATGTGGTCATTGATCTCCCTATCAATGTATTTAAGCTGCTGGCTGGGCGCTGGCCCTT TGAGAACCATGACTTTGGCGTATTTCTCTGCAAGTTGTTCCCCTTTTTGCAGAAGTCCTC AGTGGGGATCACCGTCCTCAATCTCTGCGCTCTCAGTGTTGACAGGTACAGAGCAGTTGC CTCCTGGAGTCGTGTTCAGGGAATCGGGATTCCATTGGTCACAGCCATTGAGATTGTCTC CATCTGGATCCTTTCTTTTATCCTGGCCATCCCTGAAGCAATCGGCTTTGTCATGGTGCC CTTTGAATACAAGGGCGAAGAGCACAAAACCTGTATGCTCAATGCCACGTCAAAATTCAT GGAGTTCTATCAAGACGTAAAAGACTGGTGGCTGTTCGGGTTCTACTTCTGCATGCCCCT GGTGTGTACTGCCATCTTCTACACTCTCATGACTTGTGAGATGTTAAACAGAAGAAATGG AAGCCTGAGAATTGCCCTCAGTGAACACCTGAAACAGCGTCGAGAGGTGGCAAAAACAGT GTTCTGCCTGGTTGTAATTTTCGCTCTGTGCTGGTTCCCTCTTCATTTAAGCCGTATTTT GAAGAAAACCGTGTATGATGAGATGGACAAGAACCGATGTGAATTACTTAGTTTCCTGCT CCTCATGGACTATATTGGTATTAACTTGGCAACCATGAACTCATGTATAAACCCAATAGC TCTATATTTTGTGAGCAAGAAATTTAAAAATTGTTTCCAGTCTTGCCTCTGCTGCTGCTG TTACCAGTCCAAAAGTCTGATGACCTCAGTCCCCATGAATGGAACAAGCATCCAGTGGAA GAACCATGAACAAAACAACCATAACACTGAGAGGAGCAGCCACAAGGACAGTATAAACTA AATCTCTAAAGGAACATTCATCCATGTACATCAAACCTTATTGGAGGGGAAAAAAAAATC ACACAGCAACTGTGTCTCTGGAAATCTCTCCTTCCATCCTTCTCCCATGATCAGTCCCAG CTTCAGAAAAATACTTTCCAAAACAATGAAGGTTGACTGGCTTATACCTACAAATTCAAC AAATCTTATTACTTCTTTGATGTATCTAATTTACATACTCTGCATGTTATATTCAGCCCT AAAACAATGGTGATGGTGGATGTCAGCAAGGGGAAGGGAGATTACTCTGTTAAACCAGAA GATTATTTACTACCGTTGCATGAAAATAGAGTTTTTGAGTACATGGCTAGCTTTACATGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 4-457, gnl|bosTau2|chr17 (5367087-5367542) | |
| 4-457, gnl|Hg17|chr4 (148764397-148764858) | |
| 4-457, gnl|Mm7|chr8 (76261723-76261275) | |
| 270-448, gnl|bosTau2|chr12 (28482216-28482394) | |
| 270-448, gnl|canFam2|chr22 (34383289-34383530) | |
| 270-448, gnl|danRer3|chr23 (12724948-12724717) | |
| 270-448, gnl|dasNov1|scaffold_2434 (9295-9094) | |
| 270-448, gnl|echTel1|scaffold_287077 (37310-37499) | |
| 270-448, gnl|fr1|chrUn (32544047-32543822) | |
| 270-448, gnl|galGal2|chr1 (150655883-150655652) | |
| 270-448, gnl|hg17|chr13 (77390214-77390455) | |
| 270-448, gnl|Hg17|chr13 (77390414-77390236) | |
| 270-448, gnl|loxAfr1|scaffold_7037 (52648-52407) | |
| 270-448, gnl|mm7|chr14 (98275378-98275617) | |
| 270-448, gnl|Mm7|chr14 (98275576-98275398) | |
| 270-448, gnl|monDom2|scaffold_8 (15829244-15829483) | |
| 270-448, gnl|oryCun1|scaffold_196815 (22075-21834) | |
| 270-448, gnl|panTro1|chr14 (60028932-60029173) | |
| 270-448, gnl|rheMac2|chr17 (58409396-58409637) | |
| 270-448, gnl|rn3|chr19 (32051536-32051323) | |
| 270-448, gnl|tetNig1|chr15 (2487614-2487842) | |
| 270-448, gnl|xenTro1|scaffold_141 (1549005-1548774) | |
| 583-784, gnl|bosTau2|chr17 (5416518-5416719) | |
| 583-784, gnl|canFam2|chr15 (48878602-48878819) | |
| 583-784, gnl|danRer3|chr1 (44398448-44398243) | |
| 583-784, gnl|dasNov1|scaffold_2434 (62531-62737) | |
| 583-784, gnl|echTel1|scaffold_295920 (3791-3583) | |
| 583-784, gnl|fr1|chrUn (26426765-26426971) | |
| 583-784, gnl|galGal2|chr4 (32388995-32389203) | |
| 583-784, gnl|hg17|chr4 (148811260-148811466) | |
| 583-784, gnl|Hg17|chr4 (148811260-148811461) | |
| 583-784, gnl|loxAfr1|scaffold_7037 (72882-73096) | |
| 583-784, gnl|mm7|chr8 (76215921-76215684) | |
| 583-784, gnl|Mm7|chr8 (76215888-76215687) | |
| 583-784, gnl|monDom2|scaffold_9 (16340444-16340653) | |
| 583-784, gnl|oryCun1|scaffold_214114 (93924-93713) | |
| 583-784, gnl|panTro1|chr3 (166072420-166072626) | |
| 583-784, gnl|rheMac2|chr5 (139731307-139731513) | |
| 583-784, gnl|rn3|chr19 (32100575-32100809) | |
| 583-784, gnl|tetNig1|chr18 (7135048-7135252) | |
| 583-784, gnl|xenTro1|scaffold_360 (79079-78871) | |
| 936-1071, gnl|bosTau2|chr17 (5428949-5429084) | |
| 936-1071, gnl|canFam2|chr15 (48886890-48887015) | |
| 936-1071, gnl|danRer3|chr1 (44394475-44394351) | |
| 936-1071, gnl|dasNov1|scaffold_2434 (72629-72751) | |
| 936-1071, gnl|fr1|chrUn (26428161-26428268) | |
| 936-1071, gnl|galGal2|chr4 (32395020-32395141) | |
| 936-1071, gnl|hg17|chr4 (148818548-148818672) | |
| 936-1071, gnl|Hg17|chr4 (148818572-148818707) | |
| 936-1071, gnl|loxAfr1|scaffold_84247 (4636-4511) | |
| 936-1071, gnl|mm7|chr8 (76208734-76208610) | |
| 936-1071, gnl|Mm7|chr8 (76208708-76208573) | |
| 936-1071, gnl|monDom2|scaffold_9 (16358339-16358456) | |
| 936-1071, gnl|oryCun1|scaffold_214114 (85477-85356) | |
| 936-1071, gnl|panTro1|chr3 (166079723-166079847) | |
| 936-1071, gnl|rheMac2|chr5 (139738592-139738719) | |
| 936-1071, gnl|rn3|chr19 (32107285-32107409) | |
| 936-1071, gnl|tetNig1|chr18 (7136453-7136560) | |
| 936-1071, gnl|xenTro1|scaffold_360 (70987-70861) | |
| 1177-1680, gnl|bosTau2|chr17 (5433304-5433789) | |
| 1177-1680, gnl|Hg17|chr4 (148821231-148821721) | |
| 1177-1680, gnl|Mm7|chr8 (76205894-76205409) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-457, gnl|bosTau2|chr17 (5367087-5367542) | |
| 4-457, gnl|Hg17|chr4 (148764397-148764858) | |
| 4-457, gnl|Mm7|chr8 (76261723-76261275) | |
| 270-448, gnl|bosTau2|chr12 (28482216-28482394) | |
| 270-448, gnl|canFam2|chr22 (34383289-34383530) | |
| 270-448, gnl|danRer3|chr23 (12724948-12724717) | |
| 270-448, gnl|dasNov1|scaffold_2434 (9295-9094) | |
| 270-448, gnl|echTel1|scaffold_287077 (37310-37499) | |
| 270-448, gnl|fr1|chrUn (32544047-32543822) | |
| 270-448, gnl|galGal2|chr1 (150655883-150655652) | |
| 270-448, gnl|hg17|chr13 (77390214-77390455) | |
| 270-448, gnl|Hg17|chr13 (77390414-77390236) | |
| 270-448, gnl|loxAfr1|scaffold_7037 (52648-52407) | |
| 270-448, gnl|mm7|chr14 (98275378-98275617) | |
| 270-448, gnl|Mm7|chr14 (98275576-98275398) | |
| 270-448, gnl|monDom2|scaffold_8 (15829244-15829483) | |
| 270-448, gnl|oryCun1|scaffold_196815 (22075-21834) | |
| 270-448, gnl|panTro1|chr14 (60028932-60029173) | |
| 270-448, gnl|rheMac2|chr17 (58409396-58409637) | |
| 270-448, gnl|rn3|chr19 (32051536-32051323) | |
| 270-448, gnl|tetNig1|chr15 (2487614-2487842) | |
| 270-448, gnl|xenTro1|scaffold_141 (1549005-1548774) | |
| 583-784, gnl|bosTau2|chr17 (5416518-5416719) | |
| 583-784, gnl|canFam2|chr15 (48878602-48878819) | |
| 583-784, gnl|danRer3|chr1 (44398448-44398243) | |
| 583-784, gnl|dasNov1|scaffold_2434 (62531-62737) | |
| 583-784, gnl|echTel1|scaffold_295920 (3791-3583) | |
| 583-784, gnl|fr1|chrUn (26426765-26426971) | |
| 583-784, gnl|galGal2|chr4 (32388995-32389203) | |
| 583-784, gnl|hg17|chr4 (148811260-148811466) | |
| 583-784, gnl|Hg17|chr4 (148811260-148811461) | |
| 583-784, gnl|loxAfr1|scaffold_7037 (72882-73096) | |
| 583-784, gnl|mm7|chr8 (76215921-76215684) | |
| 583-784, gnl|Mm7|chr8 (76215888-76215687) | |
| 583-784, gnl|monDom2|scaffold_9 (16340444-16340653) | |
| 583-784, gnl|oryCun1|scaffold_214114 (93924-93713) | |
| 583-784, gnl|panTro1|chr3 (166072420-166072626) | |
| 583-784, gnl|rheMac2|chr5 (139731307-139731513) | |
| 583-784, gnl|rn3|chr19 (32100575-32100809) | |
| 583-784, gnl|tetNig1|chr18 (7135048-7135252) | |
| 583-784, gnl|xenTro1|scaffold_360 (79079-78871) | |
| 936-1071, gnl|bosTau2|chr17 (5428949-5429084) | |
| 936-1071, gnl|canFam2|chr15 (48886890-48887015) | |
| 936-1071, gnl|danRer3|chr1 (44394475-44394351) | |
| 936-1071, gnl|dasNov1|scaffold_2434 (72629-72751) | |
| 936-1071, gnl|fr1|chrUn (26428161-26428268) | |
| 936-1071, gnl|galGal2|chr4 (32395020-32395141) | |
| 936-1071, gnl|hg17|chr4 (148818548-148818672) | |
| 936-1071, gnl|Hg17|chr4 (148818572-148818707) | |
| 936-1071, gnl|loxAfr1|scaffold_84247 (4636-4511) | |
| 936-1071, gnl|mm7|chr8 (76208734-76208610) | |
| 936-1071, gnl|Mm7|chr8 (76208708-76208573) | |
| 936-1071, gnl|monDom2|scaffold_9 (16358339-16358456) | |
| 936-1071, gnl|oryCun1|scaffold_214114 (85477-85356) | |
| 936-1071, gnl|panTro1|chr3 (166079723-166079847) | |
| 936-1071, gnl|rheMac2|chr5 (139738592-139738719) | |
| 936-1071, gnl|rn3|chr19 (32107285-32107409) | |
| 936-1071, gnl|tetNig1|chr18 (7136453-7136560) | |
| 936-1071, gnl|xenTro1|scaffold_360 (70987-70861) | |
| 1177-1680, gnl|bosTau2|chr17 (5433304-5433789) | |
| 1177-1680, gnl|Hg17|chr4 (148821231-148821721) | |
| 1177-1680, gnl|Mm7|chr8 (76205894-76205409) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) | |
| bla (0.124347) |