Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F15.3

Sequence:


               
               GCAGAGGGGGACCCGCTAGCTGACGACAGCACTGCGCCCCGTGCTTGGTGCAACCCTCCT
CTGCGAGGAGCTGGTGGCGCGGGGGCCGTGTGGATGGGGCCGGGAGTGGGTGGGTGGGAA
GGGAGCTGCAGTCAGTGGGGGCACCTGGCCCCTCTGGAGCGGCTTGATGACCCATTTCAA
GGAGGGACAACCAACTTCGTTCCTGACACAAGCTGGGTCTCTGTGCTCTTTTCTGTCATG
ATGTTTTTCTGTCTCCTTTTCTTCCTTTGTAAAAGAAGTGTGATCGAGACAACTTGGAAG
GTGTGTCTTGTCTTGGACTATTTCAAGAATCCAACCATACTCTCCAAGGCTGAGCAGAGA
CAAGTCTCAAGGCACAGGTTTCTGGTGATGGGATAAAAAGTTAAGGAGGTCTCTCATGTC
TGTGGAAGGAGAGGAACATTCTGGGGGCTGCAGCAACCTCTTCCGTGGGGTGTGGAGCAG
TAAGGGTCTGGGCTCGGGAGCCCCGGCCCCCTCTGCTCGTCATGTGCACTGATTGGAGGG
CCTTGCCATGCTGCAGTGGGGGTCGGGGGAGCTGAGGACCAGTGGAGGGACCTGAGTGTC
CCCAGCCTGGGCCCCAGCTCGGGAAGGCACTAGACACTGTCACTCACAGAACCCCCTTTT
GTGTTTGGTTCTTTTGCATTTCATGTACTGCAGAAGGATGGAAGGGCCTGAGTACTGGCT
GGGCTGTGTATACTGTGTATACGTGGGAGCTGGCTGCTGCGGGGACAACAGCCTGCTCCC
AATAAAGTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGGGGGACCCGCTAGCTGACGACAGCACTGCGCCCCGTGCTTGGTGCAACCCTCCT
CTGCGAGGAGCTGGTGGCGCGGGGGCCGTGTGGATGGGGCCGGGAGTGGGTGGGTGGGAA
GGGAGCTGCAGTCAGTGGGGGCACCTGGCCCCTCTGGAGCGGCTTGATGACCCATTTCAA
GGAGGGACAACCAACTTCGTTCCTGACACAAGCTGGGTCTCTGTGCTCTTTTCTGTCATG
ATGTTTTTCTGTCTCCTTTTCTTCCTTTGTAAAAGAAGTGTGATCGAGACAACTTGGAAG
GTGTGTCTTGTCTTGGACTATTTCAAGAATCCAACCATACTCTCCAAGGCTGAGCAGAGA
CAAGTCTCAAGGCACAGGTTTCTGGTGATGGGATAAAAAGTTAAGGAGGTCTCTCATGTC
TGTGGAAGGAGAGGAACATTCTGGGGGCTGCAGCAACCTCTTCCGTGGGGTGTGGAGCAG
TAAGGGTCTGGGCTCGGGAGCCCCGGCCCCCTCTGCTCGTCATGTGCACTGATTGGAGGG
CCTTGCCATGCTGCAGTGGGGGTCGGGGGAGCTGAGGACCAGTGGAGGGACCTGAGTGTC
CCCAGCCTGGGCCCCAGCTCGGGAAGGCACTAGACACTGTCACTCACAGAACCCCCTTTT
GTGTTTGGTTCTTTTGCATTTCATGTACTGCAGAAGGATGGAAGGGCCTGAGTACTGGCT
GGGCTGTGTATACTGTGTATACGTGGGAGCTGGCTGCTGCGGGGACAACAGCCTGCTCCC
AATAAAGTTGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               540-632, - strand, RNAz p=0.506828
               

               
               661-792, + strand, RNAz p=0.997659

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               540-632, - strand, RNAz p=0.506828
               

               
               661-792, + strand, RNAz p=0.997659

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               661-792, DB317891 FEKID2 Homo sapiens cDNA clone FEKID2000369 3', mRNA 
(dbj|DB317891.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, CR741018 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|CR741018.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-CF-EC1-acl-k-10-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BU683064.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-1-BB1p-ato-g-03-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BU754146.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-H-FT2-bjq-k-06-0-UI.s1 NCI_CGAP_FT2 Homo sapiens cDNA clone 
(gb|CD367270.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, POSM0605007_L19F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898012.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               661-792, DB317891 FEKID2 Homo sapiens cDNA clone FEKID2000369 3', mRNA 
(dbj|DB317891.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, CR741018 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone 
(emb|CR741018.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-CF-EC1-acl-k-10-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone 
(gb|BU683064.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-1-BB1p-ato-g-03-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BU754146.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, UI-H-FT2-bjq-k-06-0-UI.s1 NCI_CGAP_FT2 Homo sapiens cDNA clone 
(gb|CD367270.1|), blast E-value=3e-36, identity=90.15% 
               

               
               661-792, POSM0605007_L19F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV898012.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr29 (28851210-28850417)
               

               
               1-792, gnl|Hg17|chr11 (129850886-129851739)
               

               
               1-792, gnl|Mm7|chr9 (30800987-30800191)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr29 (28851210-28850417)
               

               
               1-792, gnl|Hg17|chr11 (129850886-129851739)
               

               
               1-792, gnl|Mm7|chr9 (30800987-30800191)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	540-632, - strand, RNAz p=0.506828
	661-792, + strand, RNAz p=0.997659

	661-792, DB317891 FEKID2 Homo sapiens cDNA clone FEKID2000369 3', mRNA (dbj\|DB317891.1\|), blast E-value=3e-36, identity=90.15%
	661-792, CR741018 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone (emb\|CR741018.1\|), blast E-value=3e-36, identity=90.15%
	661-792, UI-CF-EC1-acl-k-10-0-UI.s1 UI-CF-EC1 Homo sapiens cDNA clone (gb\|BU683064.1\|), blast E-value=3e-36, identity=90.15%
	661-792, UI-1-BB1p-ato-g-03-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone (gb\|BU754146.1\|), blast E-value=3e-36, identity=90.15%
	661-792, UI-H-FT2-bjq-k-06-0-UI.s1 NCI_CGAP_FT2 Homo sapiens cDNA clone (gb\|CD367270.1\|), blast E-value=3e-36, identity=90.15%
	661-792, POSM0605007_L19F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV898012.1\|), blast E-value=0, identity=100%

	1-792, gnl\|bosTau2\|chr29 (28851210-28850417)
	1-792, gnl\|Hg17\|chr11 (129850886-129851739)
	1-792, gnl\|Mm7\|chr9 (30800987-30800191)