Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F16.3

Sequence:


               
               CTGGACCCAGAGACGCAGTGCTTACTGCTGTCGGATGGAAAGCGCTCGGGCCACCAGAAC
CACGTGGTCGTGCTCCCGGACGGCGGCAGTGGCGTGGCCGCCATCAGCTTCATGGGGGCC
TTGAAAATCCCCGGCGTGGTGGAGTTCTCTCTGTGTTTGCTGTTCGCCAAGCTGGTCAGC
TACACCTTCCTCTTCTGGCTCCCGCTGTACATCACCAACGTGGACCACCTGGACGTCAAG
AAGGCCGGGGAGCTCTCCACGCTCTTTGACGTGGGCGGGATCTTTGGTGGGATCCTGGCG
GGTGTGATCTCAGACCGACTGGAGAAGAGGGCCTCCACCTGCGGCCTGATGCTGCTGCTC
GCGGCCCCGACGCTCTACGTGTTCTCTGCTGTCAGCAGAATCGGTCTGGAAGCCACCATA
GTCATGCTGCTGCTCAGCGGGGCGCTGGTCAGCGGGCCCTACGCTCTCATCACCACCGCC
GTCTCCGCCGACCTGGGGACTCATAAAAGTCTGAAAGGAAACTCCCACGCCCTCGCCACC
GTGACTGCCATCATCGACGGGACGGGGTCTGTGGGGGCGGCCCTGGGCCCGCTGCTGGCG
GGGCTCATCTCGCCGTCTGGATGGCACAACGTCTTCTCCATGCTGATGCTCGCCGACGCC
TGTGCCTTATTGTTCCTGGTCCGCCTCATACACAAGGAGCTGTGCTGCCCGGGGTCGGCG
ACGGGAGACCAAATTCCGTTTAAGGAGCACTAGCCACTCGAGCCCATGGAGGGAGGCTGG
GCCTGCCCTCCACGCACGGTCTTTCAAGGAAAAGTTCGAATAAAGGATCCTGTGTTGAAA
AGAATGATTTCCCCTTGCCTTTTGCACATTCACCTGGAACAGACACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACCCAGAGACGCAGTGCTTACTGCTGTCGGATGGAAAGCGCTCGGGCCACCAGAAC
CACGTGGTCGTGCTCCCGGACGGCGGCAGTGGCGTGGCCGCCATCAGCTTCATGGGGGCC
TTGAAAATCCCCGGCGTGGTGGAGTTCTCTCTGTGTTTGCTGTTCGCCAAGCTGGTCAGC
TACACCTTCCTCTTCTGGCTCCCGCTGTACATCACCAACGTGGACCACCTGGACGTCAAG
AAGGCCGGGGAGCTCTCCACGCTCTTTGACGTGGGCGGGATCTTTGGTGGGATCCTGGCG
GGTGTGATCTCAGACCGACTGGAGAAGAGGGCCTCCACCTGCGGCCTGATGCTGCTGCTC
GCGGCCCCGACGCTCTACGTGTTCTCTGCTGTCAGCAGAATCGGTCTGGAAGCCACCATA
GTCATGCTGCTGCTCAGCGGGGCGCTGGTCAGCGGGCCCTACGCTCTCATCACCACCGCC
GTCTCCGCCGACCTGGGGACTCATAAAAGTCTGAAAGGAAACTCCCACGCCCTCGCCACC
GTGACTGCCATCATCGACGGGACGGGGTCTGTGGGGGCGGCCCTGGGCCCGCTGCTGGCG
GGGCTCATCTCGCCGTCTGGATGGCACAACGTCTTCTCCATGCTGATGCTCGCCGACGCC
TGTGCCTTATTGTTCCTGGTCCGCCTCATACACAAGGAGCTGTGCTGCCCGGGGTCGGCG
ACGGGAGACCAAATTCCGTTTAAGGAGCACTAGCCACTCGAGCCCATGGAGGGAGGCTGG
GCCTGCCCTCCACGCACGGTCTTTCAAGGAAAAGTTCGAATAAAGGATCCTGTGTTGAAA
AGAATGATTTCCCCTTGCCTTTTGCACATTCACCTGGAACAGACACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20810145|gb|AAH29208.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20810145|gb|AAH29208.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-133, gnl|bosTau2|chr28 (9702059-9701926)
               

               
               3-133, gnl|Hg17|chr21 (42852136-42852269)
               

               
               3-133, gnl|Mm7|chr17 (29524450-29524577)
               


               
               738-886, gnl|bosTau2|chr28 (9681166-9681016)
               

               
               738-886, gnl|Hg17|chr21 (42873524-42873674)
               

               
               738-886, gnl|Mm7|chr17 (29540661-29540797)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-133, gnl|bosTau2|chr28 (9702059-9701926)
               

               
               3-133, gnl|Hg17|chr21 (42852136-42852269)
               

               
               3-133, gnl|Mm7|chr17 (29524450-29524577)
               


               
               738-886, gnl|bosTau2|chr28 (9681166-9681016)
               

               
               738-886, gnl|Hg17|chr21 (42873524-42873674)
               

               
               738-886, gnl|Mm7|chr17 (29540661-29540797)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	3-133, gnl\|bosTau2\|chr28 (9702059-9701926)
	3-133, gnl\|Hg17\|chr21 (42852136-42852269)
	3-133, gnl\|Mm7\|chr17 (29524450-29524577)

	738-886, gnl\|bosTau2\|chr28 (9681166-9681016)
	738-886, gnl\|Hg17\|chr21 (42873524-42873674)
	738-886, gnl\|Mm7\|chr17 (29540661-29540797)