Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F18.3.5

Sequence:


               
               GTAGCAGAGGTCTGCGATGACGCCAAAAACCTCAGCGTAGTCATCTTGGGAGCGTCGGAT
AAGGATCTTCACCCAAACACAGATCCTTTCAAATTTGAAATCCACAAACAAACTGTTCCT
GATAAAGTCTGGAAGATCTCCAAGATCAACAATACGCATGCCCTGGTGAGCCTTCTTCAA
AATCTGAACAAAGCCAACTACCACCTGCCCATCATGGTGACAGATTCAGGGAAACCACCC
ATGACGAACATCACAGACCTCAGGGTACAAGTGTGTTCCTGCAAGAATTCCAAAGTGGAC
TGCAACGCAGCGGGGGCCCCGCACTTCAGCACGACCGCAGTCCTGCTCCTGTCCCTCTTC
AGCTTAGCTCGTCTGTGAGAACTCCTGACATCTGAAGCTTGACTACCAAGTTTCCATAGC
AACAGGAAAAAGAGGAAAAAAAATCCAAATCTGAAGATTGCAGTTTACAGATCTCGAACT
TCACAACTAGGCCTCAATGGTTCCAGATTTTCGTTTTCTTTGCAATTTCACTTAGTCTAT
ACTTTACCATTTGGACAGCATCTTCCTTTCTCCTTTGATTAATGGAATCCTCTGAATTTT
CCCTGAGTGTTTAAAGATCATGGCATATAACTTGACCTCCTGAGAGCAGGAACAAAGACT
CCTTTTTCTGATGTGTTGCCATGTTGCTAGTCCGCGCTCCGCACATCCAGTTTTGTCAGT
GGGTTAGTATTTGTATATGTGTGCGTATCTGTATGTGTATATACCCAGTATTTATAGACA
GACTCTATGGGAGAAGCTTGGTTTTGACATGTCATCCTTCCTTGAGAGGTTAAGCAAACA
AGTAGAAGCTACGGCAGCTGATCCCTCCAGGGCCTCAGCATCATGCTCAGCACGAGCGCA
GAACACAGACCTGACACTTCTCACCGACCCATTCTGTCTGAGCCCTGCCACCACCAGCCA
GGCAGGTCCGCAGAGGCGGAGCCCCGAGACAGAGCCCTTTCTCTTTAGAGCGAGGACCTG
TTTTTCACTGCCATCCTCTGCCATGATCCCGGTGAGGGGCAGAGCTGGGCATTTTACCAT
CAAATGCATGGGCATCCGTCTGCATTTGTACGTGTCCGAATCCACAGTCCCAGTGGGTTT
TCTGAGGATGCAGATGGTGATAGAGCATCTGGCCCTCCTCGGTATGTGTACAGCCAATGG
CATCGTGGAGATCAAACGTGCTTTTGAAGAGGTCACCAGGTACCATGTGTATACACATAT
AGGCCCACGTGAATAGACATACATTTATGCACAGCCACGCCTTTGTTTCATATATACATG
CCTACAATAGAGTAAATACAGGTAGTTTTAAAAGCTCCCTTTTGTGTGAACCAACGACCA
TCGTTTGCAAAGCTGAAAATAAAAGATGTTCGTTATTGGATGCCAAGTACTCGATTTTGA
TTCTGTGAGCTTGAAGAGGCAGGCGAATGCTCGTACCAAAATGATCTTCTTGTCGCTAAG
CTGTAAATGAACCATCAAAGCTCACACCAAAATTTCCTATCAGATCAAACTAGTGACAGC
CTGCGGCTTTTTCTTAGAGCTCGCCACGACCTAGGGTAAGGTAAGTGTCTTAGCATATTT
TAATGCAGTTGCTTACTAAAGGTTTTAACCACACGCGCGCACATGCGGGCGCACACGCTT
TCTTATGCAATCTCTGTTTGCACCTGTGCTTTTCAGTTCACGTTCTGTAGGAAATAGAAG
TCATATGTTGTCTATATTGTAGTGAAATTACGCAGATAGAGTTCCATATATTGTATTTGT
TTCGATGGTAAATCTTTTTGGAGCATATAGAATGCAGAGATTTTTTTGTTTCCATTAAAA
TAAATGGATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCAGAGGTCTGCGATGACGCCAAAAACCTCAGCGTAGTCATCTTGGGAGCGTCGGAT
AAGGATCTTCACCCAAACACAGATCCTTTCAAATTTGAAATCCACAAACAAACTGTTCCT
GATAAAGTCTGGAAGATCTCCAAGATCAACAATACGCATGCCCTGGTGAGCCTTCTTCAA
AATCTGAACAAAGCCAACTACCACCTGCCCATCATGGTGACAGATTCAGGGAAACCACCC
ATGACGAACATCACAGACCTCAGGGTACAAGTGTGTTCCTGCAAGAATTCCAAAGTGGAC
TGCAACGCAGCGGGGGCCCCGCACTTCAGCACGACCGCAGTCCTGCTCCTGTCCCTCTTC
AGCTTAGCTCGTCTGTGAGAACTCCTGACATCTGAAGCTTGACTACCAAGTTTCCATAGC
AACAGGAAAAAGAGGAAAAAAAATCCAAATCTGAAGATTGCAGTTTACAGATCTCGAACT
TCACAACTAGGCCTCAATGGTTCCAGATTTTCGTTTTCTTTGCAATTTCACTTAGTCTAT
ACTTTACCATTTGGACAGCATCTTCCTTTCTCCTTTGATTAATGGAATCCTCTGAATTTT
CCCTGAGTGTTTAAAGATCATGGCATATAACTTGACCTCCTGAGAGCAGGAACAAAGACT
CCTTTTTCTGATGTGTTGCCATGTTGCTAGTCCGCGCTCCGCACATCCAGTTTTGTCAGT
GGGTTAGTATTTGTATATGTGTGCGTATCTGTATGTGTATATACCCAGTATTTATAGACA
GACTCTATGGGAGAAGCTTGGTTTTGACATGTCATCCTTCCTTGAGAGGTTAAGCAAACA
AGTAGAAGCTACGGCAGCTGATCCCTCCAGGGCCTCAGCATCATGCTCAGCACGAGCGCA
GAACACAGACCTGACACTTCTCACCGACCCATTCTGTCTGAGCCCTGCCACCACCAGCCA
GGCAGGTCCGCAGAGGCGGAGCCCCGAGACAGAGCCCTTTCTCTTTAGAGCGAGGACCTG
TTTTTCACTGCCATCCTCTGCCATGATCCCGGTGAGGGGCAGAGCTGGGCATTTTACCAT
CAAATGCATGGGCATCCGTCTGCATTTGTACGTGTCCGAATCCACAGTCCCAGTGGGTTT
TCTGAGGATGCAGATGGTGATAGAGCATCTGGCCCTCCTCGGTATGTGTACAGCCAATGG
CATCGTGGAGATCAAACGTGCTTTTGAAGAGGTCACCAGGTACCATGTGTATACACATAT
AGGCCCACGTGAATAGACATACATTTATGCACAGCCACGCCTTTGTTTCATATATACATG
CCTACAATAGAGTAAATACAGGTAGTTTTAAAAGCTCCCTTTTGTGTGAACCAACGACCA
TCGTTTGCAAAGCTGAAAATAAAAGATGTTCGTTATTGGATGCCAAGTACTCGATTTTGA
TTCTGTGAGCTTGAAGAGGCAGGCGAATGCTCGTACCAAAATGATCTTCTTGTCGCTAAG
CTGTAAATGAACCATCAAAGCTCACACCAAAATTTCCTATCAGATCAAACTAGTGACAGC
CTGCGGCTTTTTCTTAGAGCTCGCCACGACCTAGGGTAAGGTAAGTGTCTTAGCATATTT
TAATGCAGTTGCTTACTAAAGGTTTTAACCACACGCGCGCACATGCGGGCGCACACGCTT
TCTTATGCAATCTCTGTTTGCACCTGTGCTTTTCAGTTCACGTTCTGTAGGAAATAGAAG
TCATATGTTGTCTATATTGTAGTGAAATTACGCAGATAGAGTTCCATATATTGTATTTGT
TTCGATGGTAAATCTTTTTGGAGCATATAGAATGCAGAGATTTTTTTGTTTCCATTAAAA
TAAATGGATATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               36-154, - strand, RNAz p=0.651258

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-154, - strand, RNAz p=0.651258

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-154, gnl|bosTau2|chr18 (11311102-11310949)
               

               
               1-154, gnl|Hg17|chr16 (82371157-82371310)
               

               
               1-154, gnl|Mm7|chr8 (117935644-117935797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr18 (11311102-11310949)
               

               
               1-154, gnl|Hg17|chr16 (82371157-82371310)
               

               
               1-154, gnl|Mm7|chr8 (117935644-117935797)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               ski (0.733676)
               

               
               gul (0.710353)
               

               
               hea (0.613497)
               

               
               aor (0.585823)
               

               
               fat (0.442282)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               hea (0.613497)
               

               
               aor (0.585823)
               

               
               fat (0.442282)
               

               
               rec (0.346141)
               

               
               jca (0.34188)
               

               
               sme (0.305437)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-154, gnl\|bosTau2\|chr18 (11311102-11310949)
	1-154, gnl\|Hg17\|chr16 (82371157-82371310)
	1-154, gnl\|Mm7\|chr8 (117935644-117935797)

	ski (0.733676)
	gul (0.710353)
	hea (0.613497)
	aor (0.585823)
	fat (0.442282)
	rec (0.346141)
	jca (0.34188)
	sme (0.305437)
	che (0.272628)
	cbe (0.239234)
	spc (0.226732)
	sin (0.174948)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	ecc (0.115035)
	ldo (0.0970026)