Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F20.3

Sequence:


               
               CTGAGACGGAGGGGATGCTCAAGGACCTGCAGAAGAGCGTGGAGGAGGAGGAGCAGGTGT
GGAAGGCGCGAGTCAGCACCACGGAGGAGGAGCTCCAGAAGTCACGAGTTACAGTGAAAC
ATCTCGAAGAGGTCATCGAGAAGCTAAAAGGGGAACTTGAAAGTTCAGATCAGGTGAGGG
AGCACACTTCGCATCTGGAGGCGGAGCTGGAGAAGCACATGGCAGCCGCCAGCGCCGAGT
GCCAGAGCTACGCCAAGGAGGTGGCAGGGTTGAGGCAGCTTTTATTAGAATCTCAGTCAC
AGCTGGATGCAGCTAAGAGTGAAGCCCAGAAACAAAGCAGCGAGCTTGCCCTGGTCAGGC
AACAGTTGAGTGAGATGAAGAGCCACGTAGAGGATGGCGACGTAGCCAGGTCCCCGGCTG
TTTCCCCAGAGGCCCCCCCAGCAGAGCAGGACCCCAACAAGCTGAAGACACAGCTGGAGC
GGACGGAAGCCCTCCTAGAGGACGAGCAGACACGGCGGCAGAAGCTCACGGCCGAGTTTG
AGGAGGCTCAGGACGCGGCCTGTCGGCTGCAGGGGGAGCTGGAGAAGCTTCGTTGCACCA
GTACCCTTGGGTCAGAAGCAGAGGAGGCCATGCAGCTGAAGGAGAGACTAGAAAAGGAGA
AGAAGTTAACCAGTGACCTGGGACGTGCTGCCACCAAACTACAGGAGCTTTTGAAGACAA
CCCAGGAGCAGCTGGCAAAGGAGAAAGACACAGTGAAAAAGCTGCAGGAGCAGCTGGACA
AATCAGAGGATGGCAGCAGCTCAAAGGAGGGCACGTCTGTCTGAGTCTCCTGCAGAAAAA
GAAGTTACTGTTCAACTTACCAAAATGCCTTACACATTCCTTACAAATAAATAAACCGAC
CAACACAGCGATATCCGGGCCCAACTTCGGTAGCTCTGAGAAGCCATTAGAGACGACAGT
CTCTTAGCATCAGAAATAGATCTTCCAGACCCCAGTTTGTAAGAGAACCTTTGTCACGCT
GGATAAACACTATTCCCCAGGACCAGCCCGGGATCACCGGCCAGCAGACGCCAAAGCCCT
CATCAGCTGTGTGACAGACCTGGGCAGTGTGCTGGGGAGGCCGGGACCTCTGGGTATCTC
TGTGTCAATCAGTGCAATTGTTTTGTCGCTCATGGGGTTGGGGGTCAGGTGGTGGGCAGT
CCAGGAGGTGAGTCTCAGAGGCTGCGGAGCAGACTGGAGGGTCACAGCCCAGCGAGACAG
CAGCCTTCACCCCTGGAAGAAGTTACCACCAGAACTGAAGTGTGACCTCCCAGATGTTAA
TGCCATTAAAACCCATGTGTCGCCTGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGACGGAGGGGATGCTCAAGGACCTGCAGAAGAGCGTGGAGGAGGAGGAGCAGGTGT
GGAAGGCGCGAGTCAGCACCACGGAGGAGGAGCTCCAGAAGTCACGAGTTACAGTGAAAC
ATCTCGAAGAGGTCATCGAGAAGCTAAAAGGGGAACTTGAAAGTTCAGATCAGGTGAGGG
AGCACACTTCGCATCTGGAGGCGGAGCTGGAGAAGCACATGGCAGCCGCCAGCGCCGAGT
GCCAGAGCTACGCCAAGGAGGTGGCAGGGTTGAGGCAGCTTTTATTAGAATCTCAGTCAC
AGCTGGATGCAGCTAAGAGTGAAGCCCAGAAACAAAGCAGCGAGCTTGCCCTGGTCAGGC
AACAGTTGAGTGAGATGAAGAGCCACGTAGAGGATGGCGACGTAGCCAGGTCCCCGGCTG
TTTCCCCAGAGGCCCCCCCAGCAGAGCAGGACCCCAACAAGCTGAAGACACAGCTGGAGC
GGACGGAAGCCCTCCTAGAGGACGAGCAGACACGGCGGCAGAAGCTCACGGCCGAGTTTG
AGGAGGCTCAGGACGCGGCCTGTCGGCTGCAGGGGGAGCTGGAGAAGCTTCGTTGCACCA
GTACCCTTGGGTCAGAAGCAGAGGAGGCCATGCAGCTGAAGGAGAGACTAGAAAAGGAGA
AGAAGTTAACCAGTGACCTGGGACGTGCTGCCACCAAACTACAGGAGCTTTTGAAGACAA
CCCAGGAGCAGCTGGCAAAGGAGAAAGACACAGTGAAAAAGCTGCAGGAGCAGCTGGACA
AATCAGAGGATGGCAGCAGCTCAAAGGAGGGCACGTCTGTCTGAGTCTCCTGCAGAAAAA
GAAGTTACTGTTCAACTTACCAAAATGCCTTACACATTCCTTACAAATAAATAAACCGAC
CAACACAGCGATATCCGGGCCCAACTTCGGTAGCTCTGAGAAGCCATTAGAGACGACAGT
CTCTTAGCATCAGAAATAGATCTTCCAGACCCCAGTTTGTAAGAGAACCTTTGTCACGCT
GGATAAACACTATTCCCCAGGACCAGCCCGGGATCACCGGCCAGCAGACGCCAAAGCCCT
CATCAGCTGTGTGACAGACCTGGGCAGTGTGCTGGGGAGGCCGGGACCTCTGGGTATCTC
TGTGTCAATCAGTGCAATTGTTTTGTCGCTCATGGGGTTGGGGGTCAGGTGGTGGGCAGT
CCAGGAGGTGAGTCTCAGAGGCTGCGGAGCAGACTGGAGGGTCACAGCCCAGCGAGACAG
CAGCCTTCACCCCTGGAAGAAGTTACCACCAGAACTGAAGTGTGACCTCCCAGATGTTAA
TGCCATTAAAACCCATGTGTCGCCTGAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               784-1344, gnl|bosTau2|chr13 (23554298-23553759)
               

               
               784-1344, gnl|Hg17|chr20 (17542870-17542328)
               

               
               784-1344, gnl|Mm7|chr2 (143688791-143688257)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               784-1344, gnl|bosTau2|chr13 (23554298-23553759)
               

               
               784-1344, gnl|Hg17|chr20 (17542870-17542328)
               

               
               784-1344, gnl|Mm7|chr2 (143688791-143688257)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               cov (0.396458)
               

               
               csp (0.322373)
               

               
               nbm (0.297974)
               

               
               nca (0.273748)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               csp (0.322373)
               

               
               nbm (0.297974)
               

               
               nca (0.273748)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	784-1344, gnl\|bosTau2\|chr13 (23554298-23553759)
	784-1344, gnl\|Hg17\|chr20 (17542870-17542328)
	784-1344, gnl\|Mm7\|chr2 (143688791-143688257)

	cov (0.396458)
	csp (0.322373)
	nbm (0.297974)
	nca (0.273748)
	med (0.232504)
	mas (0.210305)
	cty (0.20816)
	jej (0.197844)
	duo (0.172801)
	eye (0.170503)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	cbl (0.114797)
	jca (0.11396)