Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F22.3

Sequence:


               
               TTTTCACCAAATATCTACTTTTCCTATTTCATTCCTTAAGATTGCTCACTGAGCACGTCT
GAAAAAGAAAGGTTGGCCTAACACAATTCCTAACAGAAAGTCAGTACAACACTGGCTAGT
TCAGAAATTGCTCCTCAGGCTTGGTTACCAAGAATAGCAGAGGGATGAGATGGGAGTCTT
AAGTTAGGAAATCTTGTTCTGTTCTGATCATTCTGTCCCTAATAACACTTGGCCCATTTA
AGGAACAAAGTACATCTGCATATTTCACTAACACACCAACATGTGGAAATCTAAGCAAAA
AGAAATGAATCATATAGAAGATAGCACAGGAATGAAAACAAGTTAGTCACCTTAACACTG
GAAGCCATCTTTTAATGATTGCTGCCATATTTCATCACAGTAATTTCTAGTCAAATATGG
TATTTGTACATTTAAACTTTCTCTCATGGAAAGGGGGCAGGTACCTGTTAAAGTTTTATT
TTATGCAATAATATAGTTGCTTATTATTTTGGCAATTAGAAGTAGACTCAAAGGAGATTC
CAATTTGGTTGCTGGCAGCCATACTGGGTTTCTTGATTTCAGTGCTCCAAAGAATACAGT
GGTCTCATGGAGTAGCTGACCACTAAGGAGAGAAGGATGAAAAGAGAATTACGCATCAGC
TCTCAGAACAGAAAACATCAAAAATATCGACGGATAACTGACACGGTTTTGTTAAGAGTC
AACTGTATCATAGCTCACTACTGCCAGTGTAGCAATGATGTACAACAAAAGAGATGAAAA
ACACAAAAGTCATTAAGCCACCTGATTAAAAGGAAGTCAGTATTTAAAGGCATTTAATAC
CTATTGAGTATAAATCTGAGGAGAAGAACCAATCTGTATTACCAAAAAAAAAAAAAAAAT
GTTTTCATTTTCTGTAAGATACAATGAACTGGTAAACAAACATTAAAAGTCAATTTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCACCAAATATCTACTTTTCCTATTTCATTCCTTAAGATTGCTCACTGAGCACGTCT
GAAAAAGAAAGGTTGGCCTAACACAATTCCTAACAGAAAGTCAGTACAACACTGGCTAGT
TCAGAAATTGCTCCTCAGGCTTGGTTACCAAGAATAGCAGAGGGATGAGATGGGAGTCTT
AAGTTAGGAAATCTTGTTCTGTTCTGATCATTCTGTCCCTAATAACACTTGGCCCATTTA
AGGAACAAAGTACATCTGCATATTTCACTAACACACCAACATGTGGAAATCTAAGCAAAA
AGAAATGAATCATATAGAAGATAGCACAGGAATGAAAACAAGTTAGTCACCTTAACACTG
GAAGCCATCTTTTAATGATTGCTGCCATATTTCATCACAGTAATTTCTAGTCAAATATGG
TATTTGTACATTTAAACTTTCTCTCATGGAAAGGGGGCAGGTACCTGTTAAAGTTTTATT
TTATGCAATAATATAGTTGCTTATTATTTTGGCAATTAGAAGTAGACTCAAAGGAGATTC
CAATTTGGTTGCTGGCAGCCATACTGGGTTTCTTGATTTCAGTGCTCCAAAGAATACAGT
GGTCTCATGGAGTAGCTGACCACTAAGGAGAGAAGGATGAAAAGAGAATTACGCATCAGC
TCTCAGAACAGAAAACATCAAAAATATCGACGGATAACTGACACGGTTTTGTTAAGAGTC
AACTGTATCATAGCTCACTACTGCCAGTGTAGCAATGATGTACAACAAAAGAGATGAAAA
ACACAAAAGTCATTAAGCCACCTGATTAAAAGGAAGTCAGTATTTAAAGGCATTTAATAC
CTATTGAGTATAAATCTGAGGAGAAGAACCAATCTGTATTACCAAAAAAAAAAAAAAAAT
GTTTTCATTTTCTGTAAGATACAATGAACTGGTAAACAAACATTAAAAGTCAATTTTATG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr7 (55943010-55943970)
               

               
               1-960, gnl|Hg17|chr5 (82970729-82969781)
               

               
               1-960, gnl|Mm7|chr13 (86684811-86685802)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr7 (55943010-55943970)
               

               
               1-960, gnl|Hg17|chr5 (82970729-82969781)
               

               
               1-960, gnl|Mm7|chr13 (86684811-86685802)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nca (0.821243)
               

               
               tra (0.492368)
               

               
               gul (0.177588)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.821243)
               

               
               tra (0.492368)
               

               
               gul (0.177588)
               

               
               pty (0.142714)

	1-960, gnl\|bosTau2\|chr7 (55943010-55943970)
	1-960, gnl\|Hg17\|chr5 (82970729-82969781)
	1-960, gnl\|Mm7\|chr13 (86684811-86685802)