Non-Coding RNA Search

Ss1.1-Pig4-TMW8043F24.5

Sequence:


               
               GCTGGCGGGGCCGCGGGTGCGGGGGCCTGCGGGCGGCGGCCCGGGCGGAGCGTTGGAGGG
AAGGAGGCGGTGTCATCCTTTGTATCGGCCCGGCCATGAATGGGTTGCCCTCGGCCGAGG
CGCAGGGCGGCACGGGCTGCACCCTGGCCGGTCTCCCGCCGCTACCGCGCGGCCTCAGCG
GTCTTCTCAACGCGAGCGGGGGCTCGTGGCGGGAGCTGGAACGCGTCTACAGCCAGCGCA
GCCGCATCCACGATGAGCTGAGCCGCGCCGCCCGCGTCCCGGACGGGCCCCGCTATGCTG
CCGGCGCCGCCAACGCGGGAAGTGCCACTGGTCCCCCCGGCCCGCGTCGTCCTGTCAACC
TCGACTCGGCGCTAGCGGCGTTGCGCAAAGAGATGGTGGGCCTGCGGCAGCTGGACATGT
CCCTGTTATGCCAGCTGTGGGGCCTGTACGAGTCAATCCAGGACTACAAGCACCTGTGCC
AAGACTTGAGCCTGTGCCAGGACCTGTCATCCTCTCTGCACTCAGACAGTTCCTACCCAC
CTGATGCTGGCCTATCTGATGATGACGAGCCTCCTGATGCCAGCCTGCCCCCGGACCCGC
CACCCCTCACTGTGCCCCAGACGCACAATGCCCGAGACCAGTGGCTGCAGGATGCCTTCC
ACATCAGCCTCTGAAGAGCTAAGGGTGTGGGGGGGCAGGCACCCAGGCAAAAGGCTCAGA
AATTCATCCCTCAGCAAGTACTCAGACTCTAGTGCCTGCTTTCCCCCATACCACCTCACC
TCACAGGAGGGCAAAGCCTGGGCCCCTCAGAGCTAAAACTGCCTACCCTCTCCTGTCTTG
AGTTAGCTGGCACTGGGGCAGGTACCTGGGCTACAGCCTCTGCCCATGGCACTGGACCTC
CTCTTCTCCCACCTGCGTGCACTTCAGCTTGGCCAACCTTCAGTTTGGCTGTGGGTCCAA
AACATCTGGCACTCTCCTTGACATCTCTGGGATTGGGATGAGTGCCTGGCTCCTATCTCT
TCATCTTTTGCTGCCCTTGGCAGCTGCTGGCTCAGGGGCATCCCCCCTCTGGTCCCTGGG
TTCCACTGCCTTAGACAAGGGCTCCAGGACCCATTCCTGCACCCACCCATGGCCAGGAGG
GCCAAAGCTCCGTGCTAGATATTTAAGTTTAGGGGCCATCCTCCTGGGCGCCTAGATAAA
TAAATACTCTCTCGGCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGCGGGGCCGCGGGTGCGGGGGCCTGCGGGCGGCGGCCCGGGCGGAGCGTTGGAGGG
AAGGAGGCGGTGTCATCCTTTGTATCGGCCCGGCCATGAATGGGTTGCCCTCGGCCGAGG
CGCAGGGCGGCACGGGCTGCACCCTGGCCGGTCTCCCGCCGCTACCGCGCGGCCTCAGCG
GTCTTCTCAACGCGAGCGGGGGCTCGTGGCGGGAGCTGGAACGCGTCTACAGCCAGCGCA
GCCGCATCCACGATGAGCTGAGCCGCGCCGCCCGCGTCCCGGACGGGCCCCGCTATGCTG
CCGGCGCCGCCAACGCGGGAAGTGCCACTGGTCCCCCCGGCCCGCGTCGTCCTGTCAACC
TCGACTCGGCGCTAGCGGCGTTGCGCAAAGAGATGGTGGGCCTGCGGCAGCTGGACATGT
CCCTGTTATGCCAGCTGTGGGGCCTGTACGAGTCAATCCAGGACTACAAGCACCTGTGCC
AAGACTTGAGCCTGTGCCAGGACCTGTCATCCTCTCTGCACTCAGACAGTTCCTACCCAC
CTGATGCTGGCCTATCTGATGATGACGAGCCTCCTGATGCCAGCCTGCCCCCGGACCCGC
CACCCCTCACTGTGCCCCAGACGCACAATGCCCGAGACCAGTGGCTGCAGGATGCCTTCC
ACATCAGCCTCTGAAGAGCTAAGGGTGTGGGGGGGCAGGCACCCAGGCAAAAGGCTCAGA
AATTCATCCCTCAGCAAGTACTCAGACTCTAGTGCCTGCTTTCCCCCATACCACCTCACC
TCACAGGAGGGCAAAGCCTGGGCCCCTCAGAGCTAAAACTGCCTACCCTCTCCTGTCTTG
AGTTAGCTGGCACTGGGGCAGGTACCTGGGCTACAGCCTCTGCCCATGGCACTGGACCTC
CTCTTCTCCCACCTGCGTGCACTTCAGCTTGGCCAACCTTCAGTTTGGCTGTGGGTCCAA
AACATCTGGCACTCTCCTTGACATCTCTGGGATTGGGATGAGTGCCTGGCTCCTATCTCT
TCATCTTTTGCTGCCCTTGGCAGCTGCTGGCTCAGGGGCATCCCCCCTCTGGTCCCTGGG
TTCCACTGCCTTAGACAAGGGCTCCAGGACCCATTCCTGCACCCACCCATGGCCAGGAGG
GCCAAAGCTCCGTGCTAGATATTTAAGTTTAGGGGCCATCCTCCTGGGCGCCTAGATAAA
TAAATACTCTCTCGGCAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q566R4_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q566R4_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1010-1204, - strand, RNAz p=0.998554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1010-1204, - strand, RNAz p=0.998554

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-398, gnl|bosTau2|chr29 (37878423-37878025)
               

               
               1-398, gnl|Hg17|chr11 (65096624-65097010)
               

               
               1-398, gnl|Mm7|chr19 (5624428-5624040)
               


               
               982-1224, gnl|bosTau2|chr10 (7222549-7222308)
               

               
               982-1224, gnl|Hg17|chr17 (52316695-52316440)
               

               
               982-1224, gnl|Mm7|chr19 (5623144-5622902)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-398, gnl|bosTau2|chr29 (37878423-37878025)
               

               
               1-398, gnl|Hg17|chr11 (65096624-65097010)
               

               
               1-398, gnl|Mm7|chr19 (5624428-5624040)
               


               
               982-1224, gnl|bosTau2|chr10 (7222549-7222308)
               

               
               982-1224, gnl|Hg17|chr17 (52316695-52316440)
               

               
               982-1224, gnl|Mm7|chr19 (5623144-5622902)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               ebs (0.473205)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               cga (0.279096)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	1-398, gnl\|bosTau2\|chr29 (37878423-37878025)
	1-398, gnl\|Hg17\|chr11 (65096624-65097010)
	1-398, gnl\|Mm7\|chr19 (5624428-5624040)

	982-1224, gnl\|bosTau2\|chr10 (7222549-7222308)
	982-1224, gnl\|Hg17\|chr17 (52316695-52316440)
	982-1224, gnl\|Mm7\|chr19 (5623144-5622902)

	ebs (0.473205)
	elu (0.385356)
	fty (0.351679)
	ill (0.351185)
	cga (0.279096)
	nca (0.273748)
	fce (0.271592)
	ecc (0.23007)
	col (0.195008)
	nlu (0.191681)
	nmm (0.132802)
	cov (0.132153)
	eru (0.120048)