Ss1.1-Pig4-TMW8043G03.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAACCCTGGACAGGCAGCTGCCGAGGGCGGGCTGAGGCCAGCCCCGCCCCACCTGCCCC TTTTCCGGGGATTTTTAGTCCAGGCAGGACCGCGGGTGGCGGGCGGTGGGGTGGCCTGAG TGCTGAGAGCCGCGGGAGGCTTAGCCCCGGCATTCTCCTCTTGTCTGGACTCAGTGGCAT CATCTCCTTGCCTGTACCCCCTCCCCGCCGGGGCACCCCAGGATGGTGAGGTGGTTTCAC CGAGACCTCAGCGGGCTGGATGCAGAGACCCTGCTCAAGGGCCGAGGGGTCCACGGCAGC TTCCTGGCTCGGCCCAGTCGCAAGAACCAGGGCGACTTCTCCCTCTCTGTCAGGGTGGGG GATCAGGTGACCCATATTCGGATCCAGAACTCGGGGGATTTCTACGACCTGTATGGAGGG GAGAAGTTTGCGACGCTGACGGAGCTGGTGGAGTATTACACGCAGCAGCAGGGCGTCCTG CAGGACCGAGACGGCACAATCATCCACCTCAAGTACCCGCTGAACTGCTCGGACCCCACC AGTGAGAGGTGGTACCATGGCCACATGTCTGGAGGGCAGGCAGAGACACTGCTGCAGGCC AAGGGTGAGCCCTGGACATTTCTTGTGCGTGAGAGTCTCAGCCAGCCTGGAGATTTTGTG CTGTCTGTGCTCAGCGACCAGCCCAAGGCTGGCCCGGGATCCCCACTCAAAGTCACCCAT ATCAAGGTCATGTGTGAGGGTGGCCGCTACACAGTGGGGGGTCCTGAGACCTTCGACAGC CTCACGGACCTGGTGGAGCACTTCAAGAAGACGGGGATTGAGGAGGCCTCGGGCGCCTTC GTCTACCTGCGGCAGCCATACTATGCCACGAGGGTGAACGCGGCTGACATCGAGAACCGG GTCTTGGAACTGAACAAGAAGCAGGAGTCAGAGGAGACAGCCAAGGCCGGCTTCTGGGAG GAGTTTGAGAGTCTGCAGAAGCAGGAGGTGAAGAACTTGCACCAGCGGCTGGAAGGGCAG CGGCCAGAAAACAAGAGCAAGAATCGTTACAAGAACATCCTTCCATTCGACCACAGCCGA GTGATCCTGCAGGGACGGGACAGTAACATCCCTGGGTCTGACTACATTAACGCCAACTAT GTCAAGAACAAGCTGCTAGGGCCCGATGAGAACGCTAAGACCTACATCGCCAGCCAGGGC TGCCTGGAGGCCACGGTCAACGACTTCTGGCAGATGGTGTGGCAGGAGAACACCCGTGTC ATCGTCATGACCACTCGGGAGGTGGAGAAGGGCCGGAACAAATGTGTCCCGTACTGGCCA GAAGTGGGCAGTCAGCGTGTTTACGGACCCTACGCTGTCACCAACGGTGGGGAGCACGAC ACAGCTGAGTACAAACTCCGCACCTTACAGGTCTCCCCGCTGGCAAATGGGGACCTGGTT CGGGAGATCTGGCACTACCAGTACCTGAGCTGGCCTGACCATGGGGTCCCCAGCGAGCCT GGGGGTGTCCTCAGCTTCCTGGACCAGATCAACCAGCGGCAGGAAAGTCTGCCTCACGCA GGGCCCATCATCGTGCACTGCAGCGCTGGCATCGGTCGCACTGGTACCATCATTGTCATC GACATGCTTATGGAGAGCATTTCCACCAAGGGCCTGGACTGTGACATCGACATCCAGAAG ACCATCCAGATGGTGCGGGCCCAGCGCTCGGGCATGGTGCAGACAGAGGCGCAGTACAAG TTCATCTACGTGGCCATCGCCCAGTTCATTGAAACCACCAAGAAGAAGCTGGAGGTCATA CAGTCGCAGAAGGGCCGGGAGTCGGAATATGGGAACATCACCTACCCCCTCGCCATGAAG AACGCTCATGCCAAGGCCTCCCGCACCTCCTCCAAGCACAAGGAGGACGTGTATGAGAAC GTGCACAGTAAGAACAAGAAGGAGGAGAAGGTGAAGAAGCAGCGGTCAGCAGACAAGGAG AAGAGCAAGGGCTCCCTGAAGAGGAAGTGAGCCGGGCACGTCCAGGGGCGGCCACGCCTC AGCCCCATCCCAGTGGACCACCTGCAGCCTGCACCTTGGAGCCTGCCCCCCATTCCATTG TAATTTAAATGGCCCCATCCCTACCTCCCTCTCCCAGACCCTGTATATAGCCCAGCATGG CCCCAGGCTGGGCCAGGCCCTTCTACTCCTGTAAATAAAAGCTGTTAGGATCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAACCCTGGACAGGCAGCTGCCGAGGGCGGGCTGAGGCCAGCCCCGCCCCACCTGCCCC TTTTCCGGGGATTTTTAGTCCAGGCAGGACCGCGGGTGGCGGGCGGTGGGGTGGCCTGAG TGCTGAGAGCCGCGGGAGGCTTAGCCCCGGCATTCTCCTCTTGTCTGGACTCAGTGGCAT CATCTCCTTGCCTGTACCCCCTCCCCGCCGGGGCACCCCAGGATGGTGAGGTGGTTTCAC CGAGACCTCAGCGGGCTGGATGCAGAGACCCTGCTCAAGGGCCGAGGGGTCCACGGCAGC TTCCTGGCTCGGCCCAGTCGCAAGAACCAGGGCGACTTCTCCCTCTCTGTCAGGGTGGGG GATCAGGTGACCCATATTCGGATCCAGAACTCGGGGGATTTCTACGACCTGTATGGAGGG GAGAAGTTTGCGACGCTGACGGAGCTGGTGGAGTATTACACGCAGCAGCAGGGCGTCCTG CAGGACCGAGACGGCACAATCATCCACCTCAAGTACCCGCTGAACTGCTCGGACCCCACC AGTGAGAGGTGGTACCATGGCCACATGTCTGGAGGGCAGGCAGAGACACTGCTGCAGGCC AAGGGTGAGCCCTGGACATTTCTTGTGCGTGAGAGTCTCAGCCAGCCTGGAGATTTTGTG CTGTCTGTGCTCAGCGACCAGCCCAAGGCTGGCCCGGGATCCCCACTCAAAGTCACCCAT ATCAAGGTCATGTGTGAGGGTGGCCGCTACACAGTGGGGGGTCCTGAGACCTTCGACAGC CTCACGGACCTGGTGGAGCACTTCAAGAAGACGGGGATTGAGGAGGCCTCGGGCGCCTTC GTCTACCTGCGGCAGCCATACTATGCCACGAGGGTGAACGCGGCTGACATCGAGAACCGG GTCTTGGAACTGAACAAGAAGCAGGAGTCAGAGGAGACAGCCAAGGCCGGCTTCTGGGAG GAGTTTGAGAGTCTGCAGAAGCAGGAGGTGAAGAACTTGCACCAGCGGCTGGAAGGGCAG CGGCCAGAAAACAAGAGCAAGAATCGTTACAAGAACATCCTTCCATTCGACCACAGCCGA GTGATCCTGCAGGGACGGGACAGTAACATCCCTGGGTCTGACTACATTAACGCCAACTAT GTCAAGAACAAGCTGCTAGGGCCCGATGAGAACGCTAAGACCTACATCGCCAGCCAGGGC TGCCTGGAGGCCACGGTCAACGACTTCTGGCAGATGGTGTGGCAGGAGAACACCCGTGTC ATCGTCATGACCACTCGGGAGGTGGAGAAGGGCCGGAACAAATGTGTCCCGTACTGGCCA GAAGTGGGCAGTCAGCGTGTTTACGGACCCTACGCTGTCACCAACGGTGGGGAGCACGAC ACAGCTGAGTACAAACTCCGCACCTTACAGGTCTCCCCGCTGGCAAATGGGGACCTGGTT CGGGAGATCTGGCACTACCAGTACCTGAGCTGGCCTGACCATGGGGTCCCCAGCGAGCCT GGGGGTGTCCTCAGCTTCCTGGACCAGATCAACCAGCGGCAGGAAAGTCTGCCTCACGCA GGGCCCATCATCGTGCACTGCAGCGCTGGCATCGGTCGCACTGGTACCATCATTGTCATC GACATGCTTATGGAGAGCATTTCCACCAAGGGCCTGGACTGTGACATCGACATCCAGAAG ACCATCCAGATGGTGCGGGCCCAGCGCTCGGGCATGGTGCAGACAGAGGCGCAGTACAAG TTCATCTACGTGGCCATCGCCCAGTTCATTGAAACCACCAAGAAGAAGCTGGAGGTCATA CAGTCGCAGAAGGGCCGGGAGTCGGAATATGGGAACATCACCTACCCCCTCGCCATGAAG AACGCTCATGCCAAGGCCTCCCGCACCTCCTCCAAGCACAAGGAGGACGTGTATGAGAAC GTGCACAGTAAGAACAAGAAGGAGGAGAAGGTGAAGAAGCAGCGGTCAGCAGACAAGGAG AAGAGCAAGGGCTCCCTGAAGAGGAAGTGAGCCGGGCACGTCCAGGGGCGGCCACGCCTC AGCCCCATCCCAGTGGACCACCTGCAGCCTGCACCTTGGAGCCTGCCCCCCATTCCATTG TAATTTAAATGGCCCCATCCCTACCTCCCTCTCCCAGACCCTGTATATAGCCCAGCATGG CCCCAGGCTGGGCCAGGCCCTTCTACTCCTGTAAATAAAAGCTGTTAGGATCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1433-1551, + strand, RNAz p=0.610297 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1433-1551, + strand, RNAz p=0.610297 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 351-551, gnl|bosTau2|chr5 (60322558-60322358) | |
| 351-551, gnl|Hg17|chr12 (6931404-6931604) | |
| 351-551, gnl|Mm7|chr6 (124757513-124757313) | |
| 362-539, gnl|bosTau2|chr16 (41230833-41230653) | |
| 362-539, gnl|Mm7|chr6 (124757502-124757325) | |
| 853-969, gnl|bosTau2|chr5 (60319327-60319211) | |
| 853-969, gnl|canFam2|chr27 (41120691-41120573) | |
| 853-969, gnl|danRer3|chr23 (33303689-33303561) | |
| 853-969, gnl|dasNov1|scaffold_285171 (152-246) | |
| 853-969, gnl|echTel1|scaffold_243628 (2949-3067) | |
| 853-969, gnl|fr1|chrUn (74918376-74918243) | |
| 853-969, gnl|galGal2|chr1 (71432416-71432534) | |
| 853-969, gnl|hg17|chr12 (6934794-6934912) | |
| 853-969, gnl|Hg17|chr12 (6934793-6934909) | |
| 853-969, gnl|loxAfr1|scaffold_110841 (8548-8432) | |
| 853-969, gnl|mm7|chr6 (124753469-124753351) | |
| 853-969, gnl|Mm7|chr6 (124753468-124753352) | |
| 853-969, gnl|monDom2|scaffold_31 (15463576-15463694) | |
| 853-969, gnl|oryCun1|scaffold_83126 (5360-5478) | |
| 853-969, gnl|panTro1|chr10 (7475111-7475229) | |
| 853-969, gnl|rheMac2|chr11 (7138512-7138630) | |
| 853-969, gnl|rn3|chr4 (161096917-161096799) | |
| 853-969, gnl|tetNig1|chr8 (8976958-8976825) | |
| 853-969, gnl|xenTro1|scaffold_811 (348675-348557) | |
| 1136-1319, gnl|bosTau2|chr5 (60318384-60318201) | |
| 1136-1319, gnl|Hg17|chr12 (6935829-6936017) | |
| 1136-1319, gnl|Mm7|chr6 (124752559-124752385) | |
| 1433-1583, gnl|bosTau2|chr5 (60316977-60316827) | |
| 1433-1583, gnl|Hg17|chr12 (6937347-6937497) | |
| 1433-1583, gnl|Mm7|chr6 (124750120-124749970) | |
| 1651-1819, gnl|bosTau2|chr5 (60314737-60314565) | |
| 1651-1819, gnl|Hg17|chr12 (6939511-6939685) | |
| 1651-1819, gnl|Mm7|chr6 (124746920-124746747) | |
| 1889-2045, gnl|bosTau2|chr5 (60314084-60313928) | |
| 1889-2045, gnl|Hg17|chr12 (6940215-6940378) | |
| 1889-2045, gnl|Mm7|chr6 (124746237-124746076) | |
| 2050-2199, gnl|bosTau2|chr5 (60313741-60313586) | |
| 2050-2199, gnl|Hg17|chr12 (6940576-6940723) | |
| 2050-2199, gnl|Mm7|chr6 (124745886-124745739) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 351-551, gnl|bosTau2|chr5 (60322558-60322358) | |
| 351-551, gnl|Hg17|chr12 (6931404-6931604) | |
| 351-551, gnl|Mm7|chr6 (124757513-124757313) | |
| 362-539, gnl|bosTau2|chr16 (41230833-41230653) | |
| 362-539, gnl|Mm7|chr6 (124757502-124757325) | |
| 853-969, gnl|bosTau2|chr5 (60319327-60319211) | |
| 853-969, gnl|canFam2|chr27 (41120691-41120573) | |
| 853-969, gnl|danRer3|chr23 (33303689-33303561) | |
| 853-969, gnl|dasNov1|scaffold_285171 (152-246) | |
| 853-969, gnl|echTel1|scaffold_243628 (2949-3067) | |
| 853-969, gnl|fr1|chrUn (74918376-74918243) | |
| 853-969, gnl|galGal2|chr1 (71432416-71432534) | |
| 853-969, gnl|hg17|chr12 (6934794-6934912) | |
| 853-969, gnl|Hg17|chr12 (6934793-6934909) | |
| 853-969, gnl|loxAfr1|scaffold_110841 (8548-8432) | |
| 853-969, gnl|mm7|chr6 (124753469-124753351) | |
| 853-969, gnl|Mm7|chr6 (124753468-124753352) | |
| 853-969, gnl|monDom2|scaffold_31 (15463576-15463694) | |
| 853-969, gnl|oryCun1|scaffold_83126 (5360-5478) | |
| 853-969, gnl|panTro1|chr10 (7475111-7475229) | |
| 853-969, gnl|rheMac2|chr11 (7138512-7138630) | |
| 853-969, gnl|rn3|chr4 (161096917-161096799) | |
| 853-969, gnl|tetNig1|chr8 (8976958-8976825) | |
| 853-969, gnl|xenTro1|scaffold_811 (348675-348557) | |
| 1136-1319, gnl|bosTau2|chr5 (60318384-60318201) | |
| 1136-1319, gnl|Hg17|chr12 (6935829-6936017) | |
| 1136-1319, gnl|Mm7|chr6 (124752559-124752385) | |
| 1433-1583, gnl|bosTau2|chr5 (60316977-60316827) | |
| 1433-1583, gnl|Hg17|chr12 (6937347-6937497) | |
| 1433-1583, gnl|Mm7|chr6 (124750120-124749970) | |
| 1651-1819, gnl|bosTau2|chr5 (60314737-60314565) | |
| 1651-1819, gnl|Hg17|chr12 (6939511-6939685) | |
| 1651-1819, gnl|Mm7|chr6 (124746920-124746747) | |
| 1889-2045, gnl|bosTau2|chr5 (60314084-60313928) | |
| 1889-2045, gnl|Hg17|chr12 (6940215-6940378) | |
| 1889-2045, gnl|Mm7|chr6 (124746237-124746076) | |
| 2050-2199, gnl|bosTau2|chr5 (60313741-60313586) | |
| 2050-2199, gnl|Hg17|chr12 (6940576-6940723) | |
| 2050-2199, gnl|Mm7|chr6 (124745886-124745739) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| csp (0.483559) | |
| cty (0.31224) | |
| cag (0.302389) | |
| nbm (0.198649) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.483559) | |
| cty (0.31224) | |
| cag (0.302389) | |
| nbm (0.198649) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| ctl (0.153069) | |
| pty (0.142714) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) |