Non-Coding RNA Search

Ss1.1-Pig4-TMW8043G08.3

Sequence:


               
               ATTTTTTAAACAAATCAAATTAATTTAAGTATAAAGGTTTTATTTAAGAAACAGATAATC
GTAGATGATCTGATTTATCTGTTGGTATCACAGATTTTTTGGAATGTTATTTTCCCAGTG
GAATGGCACTCACGTGTTATTGGGTTATCAGATACACACTCTTTAAGAAAAAAAGAGATG
AGGCATTTTGACTGAAGAGTATTAAACCAGTGTAATCCATCCAGTAATATGCATATTAAA
TTACCTTTTCAAAGAAAATTTTGGAAACCATTACTCCTTTAACAACTCACAGTCAGAATT
TTTCTTAATTTTTTTAAACTGAAAGAGTATCCATTTTCACAGCCCAGACAGCTGCTATCA
AAGAGAATTATGAATGGTATGAGTCCAATAAGCTTTATATTTTTAAAACCACTTAATTAC
AAAAAAATGTGAAGTTTTCTATTTAAATTATTTTCTTCATAACTTTTAAACTTCCAAACT
TAAAAGGTGATTTTGTGGGTACTCTGTGGTATCATCAAGCATGTAAAACAATTTTCCCAG
AAACATTTAAAATTTAAGTAATATACTAACTTGGCATTCATTTATCATAATTAACTTTCA
TACTTAGGAAATTATATTCCAAAAAATCTTTCTAAGCTCTTGCAGATCTACAGTATTCCT
TACCAAAATGAAAGTTGTGATTTTGCCAGCTGGTTCCCAAATTCAGTCTGTGACCAGTCA
GTCTAAAATTAATAAACAGAATGAGTACAAAAAATGGGACAGATTGTTAATGCCACTGTG
TTTATAGTTAGTAGTAGAACAATACCAGTGATTGTTTAGAAGATTTTATATTTGTATTAC
TAATTGTATCTTATAAAAGCGCTTCTGTTGTATGTTTTTTTACCTGTTGTAAAAAAAAAT
AATAAAAATTTTTTTTAAAAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTAAACAAATCAAATTAATTTAAGTATAAAGGTTTTATTTAAGAAACAGATAATC
GTAGATGATCTGATTTATCTGTTGGTATCACAGATTTTTTGGAATGTTATTTTCCCAGTG
GAATGGCACTCACGTGTTATTGGGTTATCAGATACACACTCTTTAAGAAAAAAAGAGATG
AGGCATTTTGACTGAAGAGTATTAAACCAGTGTAATCCATCCAGTAATATGCATATTAAA
TTACCTTTTCAAAGAAAATTTTGGAAACCATTACTCCTTTAACAACTCACAGTCAGAATT
TTTCTTAATTTTTTTAAACTGAAAGAGTATCCATTTTCACAGCCCAGACAGCTGCTATCA
AAGAGAATTATGAATGGTATGAGTCCAATAAGCTTTATATTTTTAAAACCACTTAATTAC
AAAAAAATGTGAAGTTTTCTATTTAAATTATTTTCTTCATAACTTTTAAACTTCCAAACT
TAAAAGGTGATTTTGTGGGTACTCTGTGGTATCATCAAGCATGTAAAACAATTTTCCCAG
AAACATTTAAAATTTAAGTAATATACTAACTTGGCATTCATTTATCATAATTAACTTTCA
TACTTAGGAAATTATATTCCAAAAAATCTTTCTAAGCTCTTGCAGATCTACAGTATTCCT
TACCAAAATGAAAGTTGTGATTTTGCCAGCTGGTTCCCAAATTCAGTCTGTGACCAGTCA
GTCTAAAATTAATAAACAGAATGAGTACAAAAAATGGGACAGATTGTTAATGCCACTGTG
TTTATAGTTAGTAGTAGAACAATACCAGTGATTGTTTAGAAGATTTTATATTTGTATTAC
TAATTGTATCTTATAAAAGCGCTTCTGTTGTATGTTTTTTTACCTGTTGTAAAAAAAAAT
AATAAAAATTTTTTTTAAAAAGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-924, gnl|bosTau2|chr27 (21692622-21691704)
               

               
               1-924, gnl|Hg17|chr8 (38297358-38296431)
               

               
               1-924, gnl|Mm7|chr8 (24430270-24431384)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr27 (21692622-21691704)
               

               
               1-924, gnl|Hg17|chr8 (38297358-38296431)
               

               
               1-924, gnl|Mm7|chr8 (24430270-24431384)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-924, gnl\|bosTau2\|chr27 (21692622-21691704)
	1-924, gnl\|Hg17\|chr8 (38297358-38296431)
	1-924, gnl\|Mm7\|chr8 (24430270-24431384)

	csp (0.161186)
	liv (0.146284)
	lin (0.145603)
	nmm (0.132802)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)
	ecc (0.115035)