Ss1.1-Pig4-TMW8043G23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCTCATCTACAGTCTCTTTCCCAACGTGCCCCCTACCATCTATTTTGGCACTCGGGAT GAGAGAGTGGAGAAACTTCCCTGGGAGCAGAGGAAGCTGCTCCGCTGGAAGATGAGCACG GTGACCCCCAACATTGTCAAGCAGACCATCGGACGATCCCACTTCAAGATCAGCAAGAGG AATGATGACTGGCTGGGCTGCTGGGGTCACCATATGAAGTCTCCTAGTTTCCGATCCATT CAGGAGCATCAGAAGCTAAACCACTTCCCAGGTTCCTTCCAGATTGGGCGAAAGGACCGC CTGTGGCGGAATCTGTCCCGCATGCAGAGCCGCTTTGGCAAGAAGGAGTTCAGTTTCTTC CCCCAGTCCTTCATCCTGCCCCAGGACGCCAAGCTCCTGCGCAAAGCCTGGGAGAGCGGC AGCCGCCAAAAGTGGATTGTTAAACCACCAGCATCCGCTCGAGGCATTGGCATCCAGGTC ATTCACAAGTGGAGTCAGCTCCCCAAGAGAAGGCCCCTTCTGGTGCAGAGGTATCTGCAC AAACCCTACCTCATCAGTGGCAGCAAGTTTGATCTGCGAATCTATGTTTACGTCACCTCC TACGATCCTCTACGGATTTACCTCTTTTCAGATGGACTCGTCCGCTTTGCCAGTTGCAAG TATTCCCCTTCCATGAAGAGCCTTGGCAACAAGTTCATGCACCTGACCAACTATAGTGTC AATAAAAAGAATGCTGAGTACCAGGCCAATGAAGATGAAACAGCCTGCCAGGGCCACAAA TGGGCACTGAAGGCTTTGTGGAGCTACCTGAGCCAGAAGGGAGTCAACAGTGATGCCATC TGGGAGAAGATAAAGGATGTTGTTGTCAAAACCATCATCTCATCAGAACCCTATGTGACC AGCCTGCTGAAGATGTATGTGCGGCGGCCCTACAGCTGCCACGAGCTCTTTGGTTTTGAC ATCATGCTGGATGAGAACCTCAAGCCCTGGGTGCTGGAAGTTAACATCTCCCCAAGCCTC CACTCCAGCTCTCCACTGGACATCAGCATCAAAGGCCAGATGATCCGTGACCTTCTGAAC CTGGCGGGCTTTGTTCTGCCCCATGCAGAGGATATCATTTCCAGCTCCAGCAGCTCCAGC AGCTGTACCACCAGCCTGCCCAGCTCCCCCAGGGATGGATGTCGAATGGCCCCGGAATAC TTCACTGCACAGAAGATGAAGAAAGCCTATTACCTGACCCAGAAAATTCCTGATCAGGAC TTCTATGCATCTGTACTAGATGTCCTGACACCAGACGATGTTCGGGTTCTGGTTGAGATG GAGGATGAGTTTTCTCGCCGAGGTCAATTTGAACGAATTTTTCCTTCTCGAATCTCTTCT CGCTATCTCCGCTTTTTTGAGCAGCCAAGATATTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCTCATCTACAGTCTCTTTCCCAACGTGCCCCCTACCATCTATTTTGGCACTCGGGAT GAGAGAGTGGAGAAACTTCCCTGGGAGCAGAGGAAGCTGCTCCGCTGGAAGATGAGCACG GTGACCCCCAACATTGTCAAGCAGACCATCGGACGATCCCACTTCAAGATCAGCAAGAGG AATGATGACTGGCTGGGCTGCTGGGGTCACCATATGAAGTCTCCTAGTTTCCGATCCATT CAGGAGCATCAGAAGCTAAACCACTTCCCAGGTTCCTTCCAGATTGGGCGAAAGGACCGC CTGTGGCGGAATCTGTCCCGCATGCAGAGCCGCTTTGGCAAGAAGGAGTTCAGTTTCTTC CCCCAGTCCTTCATCCTGCCCCAGGACGCCAAGCTCCTGCGCAAAGCCTGGGAGAGCGGC AGCCGCCAAAAGTGGATTGTTAAACCACCAGCATCCGCTCGAGGCATTGGCATCCAGGTC ATTCACAAGTGGAGTCAGCTCCCCAAGAGAAGGCCCCTTCTGGTGCAGAGGTATCTGCAC AAACCCTACCTCATCAGTGGCAGCAAGTTTGATCTGCGAATCTATGTTTACGTCACCTCC TACGATCCTCTACGGATTTACCTCTTTTCAGATGGACTCGTCCGCTTTGCCAGTTGCAAG TATTCCCCTTCCATGAAGAGCCTTGGCAACAAGTTCATGCACCTGACCAACTATAGTGTC AATAAAAAGAATGCTGAGTACCAGGCCAATGAAGATGAAACAGCCTGCCAGGGCCACAAA TGGGCACTGAAGGCTTTGTGGAGCTACCTGAGCCAGAAGGGAGTCAACAGTGATGCCATC TGGGAGAAGATAAAGGATGTTGTTGTCAAAACCATCATCTCATCAGAACCCTATGTGACC AGCCTGCTGAAGATGTATGTGCGGCGGCCCTACAGCTGCCACGAGCTCTTTGGTTTTGAC ATCATGCTGGATGAGAACCTCAAGCCCTGGGTGCTGGAAGTTAACATCTCCCCAAGCCTC CACTCCAGCTCTCCACTGGACATCAGCATCAAAGGCCAGATGATCCGTGACCTTCTGAAC CTGGCGGGCTTTGTTCTGCCCCATGCAGAGGATATCATTTCCAGCTCCAGCAGCTCCAGC AGCTGTACCACCAGCCTGCCCAGCTCCCCCAGGGATGGATGTCGAATGGCCCCGGAATAC TTCACTGCACAGAAGATGAAGAAAGCCTATTACCTGACCCAGAAAATTCCTGATCAGGAC TTCTATGCATCTGTACTAGATGTCCTGACACCAGACGATGTTCGGGTTCTGGTTGAGATG GAGGATGAGTTTTCTCGCCGAGGTCAATTTGAACGAATTTTTCCTTCTCGAATCTCTTCT CGCTATCTCCGCTTTTTTGAGCAGCCAAGATATTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 66-1374, - strand, RNAz p=0.702514 | |
| 1010-1128, - strand, RNAz p=0.609651 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 66-1374, - strand, RNAz p=0.702514 | |
| 1010-1128, - strand, RNAz p=0.609651 |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 66-179, gnl|bosTau2|chr2 (64725146-64725033) | |
| 66-179, gnl|canFam2|chr37 (28331314-28331456) | |
| 66-179, gnl|danRer3|chr9 (16914507-16914368) | |
| 66-179, gnl|dasNov1|scaffold_11464 (21394-21540) | |
| 66-179, gnl|echTel1|scaffold_325325 (54347-54492) | |
| 66-179, gnl|fr1|chrUn (40508049-40507929) | |
| 66-179, gnl|galGal2|chr7 (23189933-23189799) | |
| 66-179, gnl|hg17|chr2 (219435904-219436051) | |
| 66-179, gnl|Hg17|chr2 (219435917-219436030) | |
| 66-179, gnl|loxAfr1|scaffold_16913 (58188-58038) | |
| 66-179, gnl|mm7|chr1 (74925527-74925673) | |
| 66-179, gnl|Mm7|chr1 (74925539-74925652) | |
| 66-179, gnl|monDom2|scaffold_39 (1926110-1925953) | |
| 66-179, gnl|panTro1|chr13 (109599699-109599846) | |
| 66-179, gnl|rheMac2|chr12 (82594763-82594910) | |
| 66-179, gnl|rn3|chr9 (74163894-74164040) | |
| 66-179, gnl|tetNig1|chr2 (17106081-17105955) | |
| 66-179, gnl|xenTro1|scaffold_31 (2282988-2282856) | |
| 249-447, gnl|bosTau2|chr2 (64723914-64723716) | |
| 249-447, gnl|canFam2|chr37 (28332549-28332768) | |
| 249-447, gnl|danRer3|chr9 (16907665-16907446) | |
| 249-447, gnl|dasNov1|scaffold_11464 (22612-22821) | |
| 249-447, gnl|echTel1|scaffold_13022 (470-689) | |
| 249-447, gnl|fr1|chrUn (40507674-40507460) | |
| 249-447, gnl|galGal2|chr7 (23188352-23188143) | |
| 249-447, gnl|hg17|chr2 (219437211-219437429) | |
| 249-447, gnl|Hg17|chr2 (219437224-219437422) | |
| 249-447, gnl|loxAfr1|scaffold_63686 (9344-9125) | |
| 249-447, gnl|mm7|chr1 (74926864-74927083) | |
| 249-447, gnl|Mm7|chr1 (74926878-74927076) | |
| 249-447, gnl|monDom2|scaffold_39 (1924693-1924466) | |
| 249-447, gnl|oryCun1|scaffold_214717 (115323-115542) | |
| 249-447, gnl|panTro1|chr13 (109601006-109601224) | |
| 249-447, gnl|rheMac2|chr12 (82596071-82596289) | |
| 249-447, gnl|rn3|chr9 (74165255-74165474) | |
| 249-447, gnl|tetNig1|chr2 (17105711-17105509) | |
| 249-447, gnl|xenTro1|scaffold_31 (2281951-2281719) | |
| 529-663, gnl|bosTau2|chr2 (64722982-64722848) | |
| 529-663, gnl|canFam2|chr37 (28333159-28333318) | |
| 529-663, gnl|danRer3|chr9 (16907206-16907069) | |
| 529-663, gnl|dasNov1|scaffold_11464 (23227-23387) | |
| 529-663, gnl|echTel1|scaffold_325325 (56057-56200) | |
| 529-663, gnl|fr1|chrUn (40507115-40506976) | |
| 529-663, gnl|galGal2|chr7 (23187583-23187418) | |
| 529-663, gnl|hg17|chr2 (219437809-219437969) | |
| 529-663, gnl|Hg17|chr2 (219437823-219437957) | |
| 529-663, gnl|loxAfr1|scaffold_63686 (8730-8570) | |
| 529-663, gnl|mm7|chr1 (74927389-74927548) | |
| 529-663, gnl|Mm7|chr1 (74927402-74927536) | |
| 529-663, gnl|monDom2|scaffold_39 (1915617-1915458) | |
| 529-663, gnl|oryCun1|scaffold_214717 (115896-116055) | |
| 529-663, gnl|panTro1|chr13 (109601604-109601764) | |
| 529-663, gnl|rheMac2|chr12 (82596670-82596830) | |
| 529-663, gnl|rn3|chr9 (74165783-74165942) | |
| 529-663, gnl|tetNig1|chr2 (17105167-17105029) | |
| 529-663, gnl|xenTro1|scaffold_31 (2281035-2280900) | |
| 782-886, gnl|bosTau2|chr2 (64721072-64720968) | |
| 782-886, gnl|canFam2|chr37 (28335153-28335297) | |
| 782-886, gnl|danRer3|chr9 (16904878-16904771) | |
| 782-886, gnl|dasNov1|scaffold_11464 (24359-24497) | |
| 782-886, gnl|fr1|chrUn (40506505-40506381) | |
| 782-886, gnl|galGal2|chr7 (23185481-23185344) | |
| 782-886, gnl|hg17|chr2 (219439044-219439183) | |
| 782-886, gnl|Hg17|chr2 (219439063-219439167) | |
| 782-886, gnl|loxAfr1|scaffold_16913 (55369-55229) | |
| 782-886, gnl|mm7|chr1 (74928227-74928366) | |
| 782-886, gnl|Mm7|chr1 (74928247-74928351) | |
| 782-886, gnl|monDom2|scaffold_39 (1914262-1914122) | |
| 782-886, gnl|panTro1|chr13 (109602834-109602973) | |
| 782-886, gnl|rheMac2|chr12 (82597912-82598051) | |
| 782-886, gnl|rn3|chr9 (74166620-74166759) | |
| 782-886, gnl|tetNig1|chr2 (17104620-17104491) | |
| 782-886, gnl|xenTro1|scaffold_31 (2280170-2280045) | |
| 1010-1154, gnl|bosTau2|chr2 (64720086-64719942) | |
| 1010-1154, gnl|Hg17|chr2 (219440230-219440374) | |
| 1010-1154, gnl|Mm7|chr1 (74929634-74929787) | |
| 1256-1416, gnl|bosTau2|chr2 (64717797-64717637) | |
| 1256-1416, gnl|canFam2|chr37 (28338181-28338447) | |
| 1256-1416, gnl|danRer3|chr9 (16901781-16901560) | |
| 1256-1416, gnl|dasNov1|scaffold_38362 (41334-41596) | |
| 1256-1416, gnl|echTel1|scaffold_203495 (5731-5468) | |
| 1256-1416, gnl|fr1|chrUn (40505619-40505390) | |
| 1256-1416, gnl|galGal2|chr7 (23181376-23181114) | |
| 1256-1416, gnl|hg17|chr2 (219442964-219443231) | |
| 1256-1416, gnl|Hg17|chr2 (219442989-219443149) | |
| 1256-1416, gnl|loxAfr1|scaffold_63686 (4383-4117) | |
| 1256-1416, gnl|mm7|chr1 (74936059-74936326) | |
| 1256-1416, gnl|Mm7|chr1 (74936084-74936244) | |
| 1256-1416, gnl|monDom2|scaffold_39 (1911289-1911045) | |
| 1256-1416, gnl|oryCun1|scaffold_203163 (155691-155958) | |
| 1256-1416, gnl|panTro1|chr13 (109606774-109607041) | |
| 1256-1416, gnl|rheMac2|chr12 (82601859-82602126) | |
| 1256-1416, gnl|rn3|chr9 (74170802-74171069) | |
| 1256-1416, gnl|tetNig1|chr2 (17103637-17103421) | |
| 1256-1416, gnl|xenTro1|scaffold_31 (2277455-2277224) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 66-179, gnl|bosTau2|chr2 (64725146-64725033) | |
| 66-179, gnl|canFam2|chr37 (28331314-28331456) | |
| 66-179, gnl|danRer3|chr9 (16914507-16914368) | |
| 66-179, gnl|dasNov1|scaffold_11464 (21394-21540) | |
| 66-179, gnl|echTel1|scaffold_325325 (54347-54492) | |
| 66-179, gnl|fr1|chrUn (40508049-40507929) | |
| 66-179, gnl|galGal2|chr7 (23189933-23189799) | |
| 66-179, gnl|hg17|chr2 (219435904-219436051) | |
| 66-179, gnl|Hg17|chr2 (219435917-219436030) | |
| 66-179, gnl|loxAfr1|scaffold_16913 (58188-58038) | |
| 66-179, gnl|mm7|chr1 (74925527-74925673) | |
| 66-179, gnl|Mm7|chr1 (74925539-74925652) | |
| 66-179, gnl|monDom2|scaffold_39 (1926110-1925953) | |
| 66-179, gnl|panTro1|chr13 (109599699-109599846) | |
| 66-179, gnl|rheMac2|chr12 (82594763-82594910) | |
| 66-179, gnl|rn3|chr9 (74163894-74164040) | |
| 66-179, gnl|tetNig1|chr2 (17106081-17105955) | |
| 66-179, gnl|xenTro1|scaffold_31 (2282988-2282856) | |
| 249-447, gnl|bosTau2|chr2 (64723914-64723716) | |
| 249-447, gnl|canFam2|chr37 (28332549-28332768) | |
| 249-447, gnl|danRer3|chr9 (16907665-16907446) | |
| 249-447, gnl|dasNov1|scaffold_11464 (22612-22821) | |
| 249-447, gnl|echTel1|scaffold_13022 (470-689) | |
| 249-447, gnl|fr1|chrUn (40507674-40507460) | |
| 249-447, gnl|galGal2|chr7 (23188352-23188143) | |
| 249-447, gnl|hg17|chr2 (219437211-219437429) | |
| 249-447, gnl|Hg17|chr2 (219437224-219437422) | |
| 249-447, gnl|loxAfr1|scaffold_63686 (9344-9125) | |
| 249-447, gnl|mm7|chr1 (74926864-74927083) | |
| 249-447, gnl|Mm7|chr1 (74926878-74927076) | |
| 249-447, gnl|monDom2|scaffold_39 (1924693-1924466) | |
| 249-447, gnl|oryCun1|scaffold_214717 (115323-115542) | |
| 249-447, gnl|panTro1|chr13 (109601006-109601224) | |
| 249-447, gnl|rheMac2|chr12 (82596071-82596289) | |
| 249-447, gnl|rn3|chr9 (74165255-74165474) | |
| 249-447, gnl|tetNig1|chr2 (17105711-17105509) | |
| 249-447, gnl|xenTro1|scaffold_31 (2281951-2281719) | |
| 529-663, gnl|bosTau2|chr2 (64722982-64722848) | |
| 529-663, gnl|canFam2|chr37 (28333159-28333318) | |
| 529-663, gnl|danRer3|chr9 (16907206-16907069) | |
| 529-663, gnl|dasNov1|scaffold_11464 (23227-23387) | |
| 529-663, gnl|echTel1|scaffold_325325 (56057-56200) | |
| 529-663, gnl|fr1|chrUn (40507115-40506976) | |
| 529-663, gnl|galGal2|chr7 (23187583-23187418) | |
| 529-663, gnl|hg17|chr2 (219437809-219437969) | |
| 529-663, gnl|Hg17|chr2 (219437823-219437957) | |
| 529-663, gnl|loxAfr1|scaffold_63686 (8730-8570) | |
| 529-663, gnl|mm7|chr1 (74927389-74927548) | |
| 529-663, gnl|Mm7|chr1 (74927402-74927536) | |
| 529-663, gnl|monDom2|scaffold_39 (1915617-1915458) | |
| 529-663, gnl|oryCun1|scaffold_214717 (115896-116055) | |
| 529-663, gnl|panTro1|chr13 (109601604-109601764) | |
| 529-663, gnl|rheMac2|chr12 (82596670-82596830) | |
| 529-663, gnl|rn3|chr9 (74165783-74165942) | |
| 529-663, gnl|tetNig1|chr2 (17105167-17105029) | |
| 529-663, gnl|xenTro1|scaffold_31 (2281035-2280900) | |
| 782-886, gnl|bosTau2|chr2 (64721072-64720968) | |
| 782-886, gnl|canFam2|chr37 (28335153-28335297) | |
| 782-886, gnl|danRer3|chr9 (16904878-16904771) | |
| 782-886, gnl|dasNov1|scaffold_11464 (24359-24497) | |
| 782-886, gnl|fr1|chrUn (40506505-40506381) | |
| 782-886, gnl|galGal2|chr7 (23185481-23185344) | |
| 782-886, gnl|hg17|chr2 (219439044-219439183) | |
| 782-886, gnl|Hg17|chr2 (219439063-219439167) | |
| 782-886, gnl|loxAfr1|scaffold_16913 (55369-55229) | |
| 782-886, gnl|mm7|chr1 (74928227-74928366) | |
| 782-886, gnl|Mm7|chr1 (74928247-74928351) | |
| 782-886, gnl|monDom2|scaffold_39 (1914262-1914122) | |
| 782-886, gnl|panTro1|chr13 (109602834-109602973) | |
| 782-886, gnl|rheMac2|chr12 (82597912-82598051) | |
| 782-886, gnl|rn3|chr9 (74166620-74166759) | |
| 782-886, gnl|tetNig1|chr2 (17104620-17104491) | |
| 782-886, gnl|xenTro1|scaffold_31 (2280170-2280045) | |
| 1010-1154, gnl|bosTau2|chr2 (64720086-64719942) | |
| 1010-1154, gnl|Hg17|chr2 (219440230-219440374) | |
| 1010-1154, gnl|Mm7|chr1 (74929634-74929787) | |
| 1256-1416, gnl|bosTau2|chr2 (64717797-64717637) | |
| 1256-1416, gnl|canFam2|chr37 (28338181-28338447) | |
| 1256-1416, gnl|danRer3|chr9 (16901781-16901560) | |
| 1256-1416, gnl|dasNov1|scaffold_38362 (41334-41596) | |
| 1256-1416, gnl|echTel1|scaffold_203495 (5731-5468) | |
| 1256-1416, gnl|fr1|chrUn (40505619-40505390) | |
| 1256-1416, gnl|galGal2|chr7 (23181376-23181114) | |
| 1256-1416, gnl|hg17|chr2 (219442964-219443231) | |
| 1256-1416, gnl|Hg17|chr2 (219442989-219443149) | |
| 1256-1416, gnl|loxAfr1|scaffold_63686 (4383-4117) | |
| 1256-1416, gnl|mm7|chr1 (74936059-74936326) | |
| 1256-1416, gnl|Mm7|chr1 (74936084-74936244) | |
| 1256-1416, gnl|monDom2|scaffold_39 (1911289-1911045) | |
| 1256-1416, gnl|oryCun1|scaffold_203163 (155691-155958) | |
| 1256-1416, gnl|panTro1|chr13 (109606774-109607041) | |
| 1256-1416, gnl|rheMac2|chr12 (82601859-82602126) | |
| 1256-1416, gnl|rn3|chr9 (74170802-74171069) | |
| 1256-1416, gnl|tetNig1|chr2 (17103637-17103421) | |
| 1256-1416, gnl|xenTro1|scaffold_31 (2277455-2277224) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |