Non-Coding RNA Search

Ss1.1-Pig4-TMW8043H06.5

Sequence:


               
               TTCCATGTGCTGCGTCGCCAGATTCTCCTGCCCTTCCGGAAGCCGTTAATCATCTTCACC
CCCAAGTCCCTGCTGCGGCACCCCGAGGCCAGAACCAGCTTCGACGAGATGCTTCCAGGG
ACCCACTTCCAGAGGGTGATCCCAGAAGACGGCCCTGCAGCCCAGAACCCAGAAAACGTC
AAGAGACTGCTCTTCTGCACCGGCAAAGTGTACTACGACCTCACCCGAGAGCGCAAAGCG
CGAGGCATGGCCGAGCAAGTGGCCATCACCAGGCTCGAGCAGCTGTCGCCCTTCCCCTTC
GACCTCCTGCTGCAGGAGGTGCAGAAGTACCCCAACGCCGAGCTGGCCTGGTGCCAGGAG
GAGCACAAGAACCAGGGCTACTACGACTACGTGAAGCCCAGGCTGCGGACCACCATCAGC
CGCGCCAAGCCCGTGTGGTATGCGGGCCGGGACCCAGCGGCGGCTCCGGCCACCGGCAAC
AAGAAGACCCACCTCACAGAGCTTCAGCGCCTCCTGGACACGGCCTTCGACCTGGACGCC
TTCAAGAACTTCTCGTAGACGCGGCCCAGGCTGCGGGGGCCGCCTCCACGTCCCCACTGC
CCCTCGCTTCTCAACTAAAGAATAGTGCCTCGGCGCTGCCCGCACCTCTGCCCGCCCGCT
GCACCGCACACTCCCCCTCGCTCACCTAGGCATCAGGCTGCCGACCCCCTCACATGCGTG
GCCACCCCCAAGCCAGCAACTCCCCAGGCTCCGTGACTGCTGTCCAGTGGAGCAGCTTCA
GGGAGGCCTTGGGGAGCCAGGGGAGAGGGAGCCCCCGCAGGTGTCCTGGGGGGTCAGATC
TGCACCCACCCCCCAGCTCACCCAGCAGGACGGGCCTCACGTGGCATCCCCAGGTGCTGG
CCGTCCTCGTCACCCAGCAGGGGGACTCCCGCACCTGGACTTGGGTGGCTTCCTCTCCCC
CATCCCAGCCCCAGACCTCTCAAAGGAGCCACCGCTGTCAGAGGCTTGGCGGGGTGGGCC
GGGTTCTGGCGGGACCCTCGCGTGCAGCGAACCCTGGGCACTGCTGAGGGGCGGCTGGCG
GGAGAGGGCCTGAGGCTGACCTTGCACAGAGAGGGCAGGTCCGCTCTCTGCAGAGTCCAT
CTCCCCCCTCGAGGGTCCCGGGCGGTGGGGGGGCCCGCAGCCTCCACCCGCCTAAGGCTG
GGCAGGGAGGCGGGCCGGGCTGTGCATGGCCAGGAAGCCCCACCGGGGCTCCAGGGCCAG
GGTGCCAGTCGCTGGTCAGGTCCTGCTCTCCCTTCACCTCCAGCTCCGCCCCCTTTCCTC
GCTCCCTCTCACACGAAGGAGACTGAAGCCTTCTTCTCTCTGCTGTGCCAAAGCTGGTCA
GAAGGGGGAGAGGAAGGGCAGGAGTGAGGGGCAGCGCTGGGCCAAGGGGCCAGCCCCCCC
GACCCGTCACAGGGACAAATCTGATTTATTTATTTTGGTTAAAAAAAAAATAATAGAAAC
AACTTGGCATTGCATTTGGCTTGACCCATAAACTAAGTTATCCTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCATGTGCTGCGTCGCCAGATTCTCCTGCCCTTCCGGAAGCCGTTAATCATCTTCACC
CCCAAGTCCCTGCTGCGGCACCCCGAGGCCAGAACCAGCTTCGACGAGATGCTTCCAGGG
ACCCACTTCCAGAGGGTGATCCCAGAAGACGGCCCTGCAGCCCAGAACCCAGAAAACGTC
AAGAGACTGCTCTTCTGCACCGGCAAAGTGTACTACGACCTCACCCGAGAGCGCAAAGCG
CGAGGCATGGCCGAGCAAGTGGCCATCACCAGGCTCGAGCAGCTGTCGCCCTTCCCCTTC
GACCTCCTGCTGCAGGAGGTGCAGAAGTACCCCAACGCCGAGCTGGCCTGGTGCCAGGAG
GAGCACAAGAACCAGGGCTACTACGACTACGTGAAGCCCAGGCTGCGGACCACCATCAGC
CGCGCCAAGCCCGTGTGGTATGCGGGCCGGGACCCAGCGGCGGCTCCGGCCACCGGCAAC
AAGAAGACCCACCTCACAGAGCTTCAGCGCCTCCTGGACACGGCCTTCGACCTGGACGCC
TTCAAGAACTTCTCGTAGACGCGGCCCAGGCTGCGGGGGCCGCCTCCACGTCCCCACTGC
CCCTCGCTTCTCAACTAAAGAATAGTGCCTCGGCGCTGCCCGCACCTCTGCCCGCCCGCT
GCACCGCACACTCCCCCTCGCTCACCTAGGCATCAGGCTGCCGACCCCCTCACATGCGTG
GCCACCCCCAAGCCAGCAACTCCCCAGGCTCCGTGACTGCTGTCCAGTGGAGCAGCTTCA
GGGAGGCCTTGGGGAGCCAGGGGAGAGGGAGCCCCCGCAGGTGTCCTGGGGGGTCAGATC
TGCACCCACCCCCCAGCTCACCCAGCAGGACGGGCCTCACGTGGCATCCCCAGGTGCTGG
CCGTCCTCGTCACCCAGCAGGGGGACTCCCGCACCTGGACTTGGGTGGCTTCCTCTCCCC
CATCCCAGCCCCAGACCTCTCAAAGGAGCCACCGCTGTCAGAGGCTTGGCGGGGTGGGCC
GGGTTCTGGCGGGACCCTCGCGTGCAGCGAACCCTGGGCACTGCTGAGGGGCGGCTGGCG
GGAGAGGGCCTGAGGCTGACCTTGCACAGAGAGGGCAGGTCCGCTCTCTGCAGAGTCCAT
CTCCCCCCTCGAGGGTCCCGGGCGGTGGGGGGGCCCGCAGCCTCCACCCGCCTAAGGCTG
GGCAGGGAGGCGGGCCGGGCTGTGCATGGCCAGGAAGCCCCACCGGGGCTCCAGGGCCAG
GGTGCCAGTCGCTGGTCAGGTCCTGCTCTCCCTTCACCTCCAGCTCCGCCCCCTTTCCTC
GCTCCCTCTCACACGAAGGAGACTGAAGCCTTCTTCTCTCTGCTGTGCCAAAGCTGGTCA
GAAGGGGGAGAGGAAGGGCAGGAGTGAGGGGCAGCGCTGGGCCAAGGGGCCAGCCCCCCC
GACCCGTCACAGGGACAAATCTGATTTATTTATTTTGGTTAAAAAAAAAATAATAGAAAC
AACTTGGCATTGCATTTGGCTTGACCCATAAACTAAGTTATCCTTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5ISS2_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ISS2_MACFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               791-1443, + strand, RNAz p=0.999862

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               791-1443, + strand, RNAz p=0.999862

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002541, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002541, +

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               280-474, gnl|bosTau2|chr28 (34049497-34049307)
               

               
               280-474, gnl|Hg17|chr10 (50614232-50614043)
               

               
               280-474, gnl|Mm7|chr14 (29776236-29776430)
               


               
               598-1234, gnl|bosTau2|chr10 (33558222-33558863)
               

               
               598-1234, gnl|Hg17|chr7 (44520886-44521575)
               


               
               1252-1547, gnl|bosTau2|chr10 (33558854-33559148)
               

               
               1252-1547, gnl|Hg17|chr7 (44521558-44521896)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-474, gnl|bosTau2|chr28 (34049497-34049307)
               

               
               280-474, gnl|Hg17|chr10 (50614232-50614043)
               

               
               280-474, gnl|Mm7|chr14 (29776236-29776430)
               


               
               598-1234, gnl|bosTau2|chr10 (33558222-33558863)
               

               
               598-1234, gnl|Hg17|chr7 (44520886-44521575)
               


               
               1252-1547, gnl|bosTau2|chr10 (33558854-33559148)
               

               
               1252-1547, gnl|Hg17|chr7 (44521558-44521896)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               nms (0.427716)
               

               
               fcc (0.39557)
               

               
               nco (0.323468)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               fcc (0.39557)
               

               
               nco (0.323468)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	280-474, gnl\|bosTau2\|chr28 (34049497-34049307)
	280-474, gnl\|Hg17\|chr10 (50614232-50614043)
	280-474, gnl\|Mm7\|chr14 (29776236-29776430)

	598-1234, gnl\|bosTau2\|chr10 (33558222-33558863)
	598-1234, gnl\|Hg17\|chr7 (44520886-44521575)

	1252-1547, gnl\|bosTau2\|chr10 (33558854-33559148)
	1252-1547, gnl\|Hg17\|chr7 (44521558-44521896)

	nms (0.427716)
	fcc (0.39557)
	nco (0.323468)
	cov (0.264306)
	eru (0.240096)
	ece (0.229305)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	eli (0.151814)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)