Ss1.1-Pig4-TMW8043H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTGCTCCTGGAGACGCCGCTTGGGGACCGGCGCTTGCTTCCTCCGGCAGCTGAGGC TGCGGCGGGGCCCGGGGCTGGGGTCGGGGCCAGGAGGAATTTTGTTGTCAGAGACTAAAA GGAGGTTGTCGTAATTGCCCTTGAACAGCACACAGTAAAACACTGAGCTCTTCAGCTCCA CCTTTCTTGGTCTGAGAATTGGGAAACCAAGAAGGTTTGATGTTTTGTGTCGCGCCGCCT GAATTAGAAGCCACAATGAACGTGACCAAAGGAGGTCTGGTGTTGTTTTCAGCAAATTCT AATTCGTCGTGTATGGAGCTTTCCAAGAAAATTGCCGAGCGGCTGGGGGTGGAGATGGGC AAGGTGCAGGTTTACCAGGAGCCCGACAGAGAAACAAGAGTGCAAATTCAAGAGTCTGTG CGGGGGAAGGATGTTTTCATCATCCAGACTGTTTCAAAGGACGTCAACACCACCATCATG GAGCTGCTGATCATGGTGTACGCCTGCAAGACCTCCTGCGCCAAGAGCGTCACCGGCGTG ATCCCCTACTTCCCCTACAGCAAGCAGTGCAAGATGCGCAAGCGGGGCTCCATCGTCTCC AAGCTGCTGGCCTCCATGATGTGCAAAGCCGGTCTAACTCATCTCATTACTATGGATTTA CACCAAAAGGAAATTCAGGGCTTCTTCAATATTCCTGTTGATAATTTAAGAGCATCTCCG GGGGCCCGGGGCTGGGGTCGGGGCCAGATCCCGGACTACAGGAATGCGGTGATCGTGGCC AAGTCTCCAGCCTCGGCCAAGAGGGCACAATCCTTCGCCGAGCGGCTGCGGCTGGGCATC GCGGTGATTCACGGAGAAGCGCAGGACGCGGAGTCGGACCTGGTGGACGGCCGGCACTCG CCGCCCATGGTCAGGAGCGCGGCGGCCATCCACCCCAGCCTGGAGATCCCCATGCTGATC CCGAAGGAGAAGCCTCCCATCACGGTTGTCGGCGACGTGGGAGGAAGGATTGCCATCATC GTGGATGACATCATCGATGACGTGGACAGCTTCCTCGCGGCGGCGGAGACCCTGAAGGAG AGGGGCGCCTATAAGATCTTCGTGATGGCGACCCACGGCTTGTTGTCCTCCGACGCCCCC CGGCTCATTGAGGAATCTGCCATCGACGAGGTGGTGGTCACCAACACAATTCCGCATGAA ATCCAGAAGCTCCAGTGCCCCAAGATCAAAACGGTGGACATCAGCATGATCCTCTCGGAG GCCATCCGCCGGATTCACAATGGGGAGTCCATGTCCTACCTTTTCAGAAACATAGGTGTA GACGACTGAGCTCCCTTCCTCTCAACTCCCCGGGCCAGACCGGGGCCGCGGGAGTGAGCG CTGTGAGGCTCCTGCCCTCGGGCTGTGTTTCCCGGGGCCGTCGGTGTCTTGTCCCTTCTT TTCGTTCATCCCTATGAAGATAGACCACCTTTTTATGTCCTTTTGGGTGTTTGTGGGGGG GGTATTTTTTAAAAGGCAAACTATCATCTCCTCTAAATAAAGTAAGTTAACACCCAGTTG TGTTCAGTTTAACTGTTTAAAAAATAACTTGGACTGCGATTTTTTAAGCTCACAAACAGC CTTTTCCAAAGTTGCTGGAGCCCAAGTGCTTGAAAGTTCATAAAATGATCTACTCTATGA TACTGTAGTTGAAAAGCCAAAAAGTTTATGCTATTAAATCCAGTAAGTTACATTTTTAGA AATGCTTTTATAGACAAGCATATGGAATGTGTGACCATTATTTATTTTCCGCAACAAAAA AGGAGGAATAAAAAACTACTGTGCGTGTGTTTTTTTAAACTTTGTGTTTAGGCAGTCGTT TTATAACTAAAATAAAAGGAAAGCTGAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTGCTCCTGGAGACGCCGCTTGGGGACCGGCGCTTGCTTCCTCCGGCAGCTGAGGC TGCGGCGGGGCCCGGGGCTGGGGTCGGGGCCAGGAGGAATTTTGTTGTCAGAGACTAAAA GGAGGTTGTCGTAATTGCCCTTGAACAGCACACAGTAAAACACTGAGCTCTTCAGCTCCA CCTTTCTTGGTCTGAGAATTGGGAAACCAAGAAGGTTTGATGTTTTGTGTCGCGCCGCCT GAATTAGAAGCCACAATGAACGTGACCAAAGGAGGTCTGGTGTTGTTTTCAGCAAATTCT AATTCGTCGTGTATGGAGCTTTCCAAGAAAATTGCCGAGCGGCTGGGGGTGGAGATGGGC AAGGTGCAGGTTTACCAGGAGCCCGACAGAGAAACAAGAGTGCAAATTCAAGAGTCTGTG CGGGGGAAGGATGTTTTCATCATCCAGACTGTTTCAAAGGACGTCAACACCACCATCATG GAGCTGCTGATCATGGTGTACGCCTGCAAGACCTCCTGCGCCAAGAGCGTCACCGGCGTG ATCCCCTACTTCCCCTACAGCAAGCAGTGCAAGATGCGCAAGCGGGGCTCCATCGTCTCC AAGCTGCTGGCCTCCATGATGTGCAAAGCCGGTCTAACTCATCTCATTACTATGGATTTA CACCAAAAGGAAATTCAGGGCTTCTTCAATATTCCTGTTGATAATTTAAGAGCATCTCCG GGGGCCCGGGGCTGGGGTCGGGGCCAGATCCCGGACTACAGGAATGCGGTGATCGTGGCC AAGTCTCCAGCCTCGGCCAAGAGGGCACAATCCTTCGCCGAGCGGCTGCGGCTGGGCATC GCGGTGATTCACGGAGAAGCGCAGGACGCGGAGTCGGACCTGGTGGACGGCCGGCACTCG CCGCCCATGGTCAGGAGCGCGGCGGCCATCCACCCCAGCCTGGAGATCCCCATGCTGATC CCGAAGGAGAAGCCTCCCATCACGGTTGTCGGCGACGTGGGAGGAAGGATTGCCATCATC GTGGATGACATCATCGATGACGTGGACAGCTTCCTCGCGGCGGCGGAGACCCTGAAGGAG AGGGGCGCCTATAAGATCTTCGTGATGGCGACCCACGGCTTGTTGTCCTCCGACGCCCCC CGGCTCATTGAGGAATCTGCCATCGACGAGGTGGTGGTCACCAACACAATTCCGCATGAA ATCCAGAAGCTCCAGTGCCCCAAGATCAAAACGGTGGACATCAGCATGATCCTCTCGGAG GCCATCCGCCGGATTCACAATGGGGAGTCCATGTCCTACCTTTTCAGAAACATAGGTGTA GACGACTGAGCTCCCTTCCTCTCAACTCCCCGGGCCAGACCGGGGCCGCGGGAGTGAGCG CTGTGAGGCTCCTGCCCTCGGGCTGTGTTTCCCGGGGCCGTCGGTGTCTTGTCCCTTCTT TTCGTTCATCCCTATGAAGATAGACCACCTTTTTATGTCCTTTTGGGTGTTTGTGGGGGG GGTATTTTTTAAAAGGCAAACTATCATCTCCTCTAAATAAAGTAAGTTAACACCCAGTTG TGTTCAGTTTAACTGTTTAAAAAATAACTTGGACTGCGATTTTTTAAGCTCACAAACAGC CTTTTCCAAAGTTGCTGGAGCCCAAGTGCTTGAAAGTTCATAAAATGATCTACTCTATGA TACTGTAGTTGAAAAGCCAAAAAGTTTATGCTATTAAATCCAGTAAGTTACATTTTTAGA AATGCTTTTATAGACAAGCATATGGAATGTGTGACCATTATTTATTTTCCGCAACAAAAA AGGAGGAATAAAAAACTACTGTGCGTGTGTTTTTTTAAACTTTGTGTTTAGGCAGTCGTT TTATAACTAAAATAAAAGGAAAGCTGAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 835-952, - strand, RNAz p=0.689219 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 835-952, - strand, RNAz p=0.689219 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 182-339, gnl|bosTau2|chr19 (26739975-26740134) | |
| 182-339, gnl|Hg17|chr17 (18709832-18709991) | |
| 182-339, gnl|Mm7|chr11 (61837911-61837752) | |
| 459-633, gnl|bosTau2|chr19 (26743428-26743602) | |
| 459-633, gnl|Hg17|chr17 (18721736-18721910) | |
| 459-633, gnl|Mm7|chr11 (61830642-61830468) | |
| 802-952, gnl|bosTau2|chr19 (26749269-26749419) | |
| 802-952, gnl|canFam2|chr5 (44133660-44133474) | |
| 802-952, gnl|danRer3|chr3 (38255968-38255798) | |
| 802-952, gnl|dasNov1|scaffold_67787 (1888-2072) | |
| 802-952, gnl|echTel1|scaffold_157737 (4553-4731) | |
| 802-952, gnl|fr1|chrUn (132241402-132241221) | |
| 802-952, gnl|galGal2|chr14 (7185935-7186107) | |
| 802-952, gnl|hg17|chr17 (18755110-18755297) | |
| 802-952, gnl|Hg17|chr17 (18755139-18755289) | |
| 802-952, gnl|loxAfr1|scaffold_9877 (14511-14345) | |
| 802-952, gnl|mm7|chr11 (61818652-61818468) | |
| 802-952, gnl|Mm7|chr11 (61818624-61818474) | |
| 802-952, gnl|monDom2|scaffold_19 (6863934-6864118) | |
| 802-952, gnl|oryCun1|scaffold_171701 (31610-31436) | |
| 802-952, gnl|panTro1|chr19 (19184778-19184965) | |
| 802-952, gnl|rheMac2|chr16 (18544741-18544928) | |
| 802-952, gnl|rn3|chr10 (47910903-47910718) | |
| 802-952, gnl|tetNig1|chrUn_random (37528949-37529116) | |
| 802-952, gnl|xenTro1|scaffold_12 (681003-681163) | |
| 1169-1891, gnl|bosTau2|chr19 (26755038-26755778) | |
| 1169-1891, gnl|Hg17|chr17 (18774576-18775305) | |
| 1169-1891, gnl|Mm7|chr11 (61811862-61811160) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 182-339, gnl|bosTau2|chr19 (26739975-26740134) | |
| 182-339, gnl|Hg17|chr17 (18709832-18709991) | |
| 182-339, gnl|Mm7|chr11 (61837911-61837752) | |
| 459-633, gnl|bosTau2|chr19 (26743428-26743602) | |
| 459-633, gnl|Hg17|chr17 (18721736-18721910) | |
| 459-633, gnl|Mm7|chr11 (61830642-61830468) | |
| 802-952, gnl|bosTau2|chr19 (26749269-26749419) | |
| 802-952, gnl|canFam2|chr5 (44133660-44133474) | |
| 802-952, gnl|danRer3|chr3 (38255968-38255798) | |
| 802-952, gnl|dasNov1|scaffold_67787 (1888-2072) | |
| 802-952, gnl|echTel1|scaffold_157737 (4553-4731) | |
| 802-952, gnl|fr1|chrUn (132241402-132241221) | |
| 802-952, gnl|galGal2|chr14 (7185935-7186107) | |
| 802-952, gnl|hg17|chr17 (18755110-18755297) | |
| 802-952, gnl|Hg17|chr17 (18755139-18755289) | |
| 802-952, gnl|loxAfr1|scaffold_9877 (14511-14345) | |
| 802-952, gnl|mm7|chr11 (61818652-61818468) | |
| 802-952, gnl|Mm7|chr11 (61818624-61818474) | |
| 802-952, gnl|monDom2|scaffold_19 (6863934-6864118) | |
| 802-952, gnl|oryCun1|scaffold_171701 (31610-31436) | |
| 802-952, gnl|panTro1|chr19 (19184778-19184965) | |
| 802-952, gnl|rheMac2|chr16 (18544741-18544928) | |
| 802-952, gnl|rn3|chr10 (47910903-47910718) | |
| 802-952, gnl|tetNig1|chrUn_random (37528949-37529116) | |
| 802-952, gnl|xenTro1|scaffold_12 (681003-681163) | |
| 1169-1891, gnl|bosTau2|chr19 (26755038-26755778) | |
| 1169-1891, gnl|Hg17|chr17 (18774576-18775305) | |
| 1169-1891, gnl|Mm7|chr11 (61811862-61811160) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cbr (2.68748) | |
| cov (0.528611) | |
| cty (0.41632) | |
| ill (0.351185) | |
| eye (0.341006) | |
| sme (0.305437) | |
| med (0.232504) | |
| duo (0.172801) | |
| mga (0.160205) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (2.68748) | |
| cov (0.528611) | |
| cty (0.41632) | |
| ill (0.351185) | |
| eye (0.341006) | |
| sme (0.305437) | |
| med (0.232504) | |
| duo (0.172801) | |
| mga (0.160205) | |
| fco (0.157208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cly (0.120642) | |
| cbl (0.114797) | |
| eje (0.0988338) |