Non-Coding RNA Search

Ss1.1-Pig4-TMW8043H12.5

Sequence:


               
               GGATGATGGTGAAGCAAAAGAAATTTCCACTCCTACCCATTGGTCTAAACTTGATCCAAA
GACAATGAAGGTAAATGATCTCCGTAAAGAATTAGAAAGTCGAACTCTTAGTTCCAAAGG
CTTAAAATCCCAGTTAATAGCCCGATTGACAAAACAGCTTAAACTAGAAGAGCAAAAAGA
GAAAGGAAGAAAGTTAGAGAAATCTGAAAAAGAAGAGGAAGAGGAAGATGATAGGAAATC
TGAAGATGATAAAGAGGAAGAAGAAAGAAAACGTCAAGAAGAACTAGAACGCCAGCGTCG
GATCGAGATGAGGAAGAAATAAACAAACGAGATGACAAAAGAGATATTAAACTGGGCTGC
AAAAAGTGGCAAGTTTGATTGTAGCATCATGTCTTTGAGTGTACTTTTGGACTACAGATT
AGAGGATAATAAAGAACATTCATTTGAGGTTTCATTATTTGCAGAACTTTTCAATGAGAT
GCTTCAAAGAGATTTTGGTGTTAGAATATACAAATCATTATTGTCTCTTCCTGAGAAAGA
GGATAAAAAAGAAAAGGAGAAGAAAAGCAAAAAGGATGATAGAAAAGATAAAAAAGAAGA
AAGAGATGATGAAACTGATGAGCCAAAACCCAAGCGAAGAAAATCAGGCGATGATAAAGA
TAAAAAAGAAGATAGAGATGAAAGGAAGAAAGAAGATAAAAGAAAAGATGATTCTAAAGA
TGATGATGAAACTGAAGAAGATAATAATCAAGATGAATATGATCCAATGGAAGCAGAAGA
AGCAGAAAAAGGATGATAGAAAAGATAAAAAAGAAGAAAGAGATGATGAAACTGATGAGC
CAAAACCCAAGCGAAGAAAATCAGGCGATGATAAAGATAAAAAAGAAGATAGAGATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGATGGTGAAGCAAAAGAAATTTCCACTCCTACCCATTGGTCTAAACTTGATCCAAA
GACAATGAAGGTAAATGATCTCCGTAAAGAATTAGAAAGTCGAACTCTTAGTTCCAAAGG
CTTAAAATCCCAGTTAATAGCCCGATTGACAAAACAGCTTAAACTAGAAGAGCAAAAAGA
GAAAGGAAGAAAGTTAGAGAAATCTGAAAAAGAAGAGGAAGAGGAAGATGATAGGAAATC
TGAAGATGATAAAGAGGAAGAAGAAAGAAAACGTCAAGAAGAACTAGAACGCCAGCGTCG
GATCGAGATGAGGAAGAAATAAACAAACGAGATGACAAAAGAGATATTAAACTGGGCTGC
AAAAAGTGGCAAGTTTGATTGTAGCATCATGTCTTTGAGTGTACTTTTGGACTACAGATT
AGAGGATAATAAAGAACATTCATTTGAGGTTTCATTATTTGCAGAACTTTTCAATGAGAT
GCTTCAAAGAGATTTTGGTGTTAGAATATACAAATCATTATTGTCTCTTCCTGAGAAAGA
GGATAAAAAAGAAAAGGAGAAGAAAAGCAAAAAGGATGATAGAAAAGATAAAAAAGAAGA
AAGAGATGATGAAACTGATGAGCCAAAACCCAAGCGAAGAAAATCAGGCGATGATAAAGA
TAAAAAAGAAGATAGAGATGAAAGGAAGAAAGAAGATAAAAGAAAAGATGATTCTAAAGA
TGATGATGAAACTGAAGAAGATAATAATCAAGATGAATATGATCCAATGGAAGCAGAAGA
AGCAGAAAAAGGATGATAGAAAAGATAAAAAAGAAGAAAGAGATGATGAAACTGATGAGC
CAAAACCCAAGCGAAGAAAATCAGGCGATGATAAAGATAAAAAAGAAGATAGAGATGAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               69-257, gnl|bosTau2|chr28 (16601676-16601488)
               

               
               69-257, gnl|Hg17|chr10 (70190768-70190956)
               

               
               69-257, gnl|Mm7|chr10 (62279069-62278881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-257, gnl|bosTau2|chr28 (16601676-16601488)
               

               
               69-257, gnl|Hg17|chr10 (70190768-70190956)
               

               
               69-257, gnl|Mm7|chr10 (62279069-62278881)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.346141)
               

               
               ste (0.135208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               ste (0.135208)

	69-257, gnl\|bosTau2\|chr28 (16601676-16601488)
	69-257, gnl\|Hg17\|chr10 (70190768-70190956)
	69-257, gnl\|Mm7\|chr10 (62279069-62278881)