Ss1.1-Pig4-TMW8043I03.5
|
GTGGAGGAGGCAACTACCGAGGAGGTTTCAACCGCAGTGGGGGTGGTGGCTACAACCAGA
ACCGCTGGGGTAACAACAGCCGGGATAACAACAACTCCAACAACCGAGGCAGCTACAACC
GGGCTCCCCAGCAACAGCCACCACCACAGCAGCCGCCGCCCCCACAGCCACCACCACAGC
AGCCTCCACCGCCACCCAGCTACAGCCCTGCTCGGAATCCCCCAGGGGCCAGCAGCTACA
ACAAGAACAGCAACATCCCTGGTTCAAGCGCCAATACCAGCACCCCTACAGTCAGCAGCT
ACAGCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGTTACAGCCAGG
GCTACACAGCCCCTCCGCCTCCACCTCCACCACCACCTGCCTACAACTATGGGAGCTACG
GCGGCTACAACCCAGCCCCATACACCCCACCACCGCCCCCCACCGCACAGACCTACCCTC
AGCCCAGCTATAACCAGTATCAACAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACC
AGGGCCAGTGGACGCCATACTACGGGAACTACGACTATGGGAGCTACTCTGGGAACACAC
AGGGGGGCACAAGCACACAGTAGCAGTGTGTCCTGGGGGCCCCTCCCGGCTTCCTCCACC
AGCGCCCACCTTGGCCCCCCTCGTCCACCCCCACTGGGTCCCGTGGTGCTGGGGGACGGG
TCCTCCCAGGGCTGCCTCCCCTCTGAGGGGCTCTTCCCCCAGACAGGGTGGGTGTTTTCC
TCTGGATTCAAACAGGCAACAATGACCTTTTATTTTCTGTTTGTCCCCCAGCCCTTTCCT
CTTCCCCTGCCTCCTTTTTGACTAAAGATCCCCTACCATTCATCATACAGTGAGGCTACA
GGACTGAGGGAAGAGCCCCTTCCTGTCCTCTTGCCCCAGCCCTGCTCCAGCCCCTCAGCT
TCCCAGACTCTCTTGCAGTTGGTTGTAAATTCTTCCAGGAGCTGTTTTACTGTCTACTTT
TAAGGATTTAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAAAAAAAAGTTTAAAAGCA
AAATGCAGAGGGAGGAAGCAGTGACAGAATTTTTTGGTAATTATGCTTTTTTTTAATTTT
TAGAATTGTCCATTTTTACTGTGGGTCGGCTGTTGATATTTCATCAGGATAACCATTTCT
TTTCTGAGTTCAGGTGACGGAGGAAGAGCCACACCCTTAAAACAAAACACACCCAAAACA
AAACCACAGAATCATCTTTAACCTGACTTTTTATACAATGTCTCAGTTTCCCGTAACTTT
GCACACAAGCTTCTGTGTTGAGTTGAATTGTACCTGCTTTTTGTATTTGGAGAGAGTGTG
ACTATTGAACTTGAAACCTTTTATTCCAGGCGTCTTGGTAGTTTCTGGTGGGATGAAGTG
GGGAGAGGGAAGAAGGGAGTTGGGGGGAGGGGGTTCCTTCCCTTCAGGACATGAAGTTTC
TCCCACCGCTTCCTCTCCCGAGGTCTCCCAGGTACCAGATCTAAAAGTTTTCCCTACAGT
GATCCTCTGATTATTTTTACTTCCCCCTGACCCCTATGTTTTAACAGGATTTTAACAAAC
TGCACTTATTAAGAAATGTGTTTGCCCTGTTTTGTTTTTGTTTTGTTTCAATAAATGACA
TGGCACCTCCTAGCAGGAAGGAAGCAGGGTTTCAAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGGAGGAGGCAACTACCGAGGAGGTTTCAACCGCAGTGGGGGTGGTGGCTACAACCAGA
ACCGCTGGGGTAACAACAGCCGGGATAACAACAACTCCAACAACCGAGGCAGCTACAACC
GGGCTCCCCAGCAACAGCCACCACCACAGCAGCCGCCGCCCCCACAGCCACCACCACAGC
AGCCTCCACCGCCACCCAGCTACAGCCCTGCTCGGAATCCCCCAGGGGCCAGCAGCTACA
ACAAGAACAGCAACATCCCTGGTTCAAGCGCCAATACCAGCACCCCTACAGTCAGCAGCT
ACAGCCCTCCACAGCCGAGTTACAGCCAGCCACCCTACAACCAAGGAGGTTACAGCCAGG
GCTACACAGCCCCTCCGCCTCCACCTCCACCACCACCTGCCTACAACTATGGGAGCTACG
GCGGCTACAACCCAGCCCCATACACCCCACCACCGCCCCCCACCGCACAGACCTACCCTC
AGCCCAGCTATAACCAGTATCAACAGTATGCCCAGCAGTGGAACCAGTACTATCAGAACC
AGGGCCAGTGGACGCCATACTACGGGAACTACGACTATGGGAGCTACTCTGGGAACACAC
AGGGGGGCACAAGCACACAGTAGCAGTGTGTCCTGGGGGCCCCTCCCGGCTTCCTCCACC
AGCGCCCACCTTGGCCCCCCTCGTCCACCCCCACTGGGTCCCGTGGTGCTGGGGGACGGG
TCCTCCCAGGGCTGCCTCCCCTCTGAGGGGCTCTTCCCCCAGACAGGGTGGGTGTTTTCC
TCTGGATTCAAACAGGCAACAATGACCTTTTATTTTCTGTTTGTCCCCCAGCCCTTTCCT
CTTCCCCTGCCTCCTTTTTGACTAAAGATCCCCTACCATTCATCATACAGTGAGGCTACA
GGACTGAGGGAAGAGCCCCTTCCTGTCCTCTTGCCCCAGCCCTGCTCCAGCCCCTCAGCT
TCCCAGACTCTCTTGCAGTTGGTTGTAAATTCTTCCAGGAGCTGTTTTACTGTCTACTTT
TAAGGATTTAAAAAAAAAAAAAAAAATCAAAAACTTAAAAAAAAAAAAAGTTTAAAAGCA
AAATGCAGAGGGAGGAAGCAGTGACAGAATTTTTTGGTAATTATGCTTTTTTTTAATTTT
TAGAATTGTCCATTTTTACTGTGGGTCGGCTGTTGATATTTCATCAGGATAACCATTTCT
TTTCTGAGTTCAGGTGACGGAGGAAGAGCCACACCCTTAAAACAAAACACACCCAAAACA
AAACCACAGAATCATCTTTAACCTGACTTTTTATACAATGTCTCAGTTTCCCGTAACTTT
GCACACAAGCTTCTGTGTTGAGTTGAATTGTACCTGCTTTTTGTATTTGGAGAGAGTGTG
ACTATTGAACTTGAAACCTTTTATTCCAGGCGTCTTGGTAGTTTCTGGTGGGATGAAGTG
GGGAGAGGGAAGAAGGGAGTTGGGGGGAGGGGGTTCCTTCCCTTCAGGACATGAAGTTTC
TCCCACCGCTTCCTCTCCCGAGGTCTCCCAGGTACCAGATCTAAAAGTTTTCCCTACAGT
GATCCTCTGATTATTTTTACTTCCCCCTGACCCCTATGTTTTAACAGGATTTTAACAAAC
TGCACTTATTAAGAAATGTGTTTGCCCTGTTTTGTTTTTGTTTTGTTTCAATAAATGACA
TGGCACCTCCTAGCAGGAAGGAAGCAGGGTTTCAAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
108-216, - strand, RNAmicro p=0.999997 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
108-216, - strand, RNAmicro p=0.999997 |
|
1474-1438, DB814876 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB814876.1|), blast E-value=1e-23, identity=100% |
|
1380-1434, AM036586 KN-252-spleen, Bos indicus Bos indicus cDNA clone
(emb|AM036586.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, AM037109 KN-252-spleen, Bos indicus Bos indicus cDNA clone
(emb|AM037109.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, nae12e07.x1 Dog eye eye minus lens and cornea. Unnormalized (nae)
(gb|DN877278.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, CYLA_5754 cynomolgus monkey B lymphocytes library Macaca
(gb|DW528042.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, 000926BEMN016399HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY068691.1|), blast E-value=7e-19, identity=98.18% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1474-1438, DB814876 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB814876.1|), blast E-value=1e-23, identity=100% |
|
1380-1434, AM036586 KN-252-spleen, Bos indicus Bos indicus cDNA clone
(emb|AM036586.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, AM037109 KN-252-spleen, Bos indicus Bos indicus cDNA clone
(emb|AM037109.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, nae12e07.x1 Dog eye eye minus lens and cornea. Unnormalized (nae)
(gb|DN877278.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, CYLA_5754 cynomolgus monkey B lymphocytes library Macaca
(gb|DW528042.1|), blast E-value=7e-19, identity=98.18% |
|
1380-1434, 000926BEMN016399HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY068691.1|), blast E-value=7e-19, identity=98.18% |
Human gene identifier and UTR site,
human gene reading direction
|
23-319, gnl|bosTau2|chr18 (45785791-45786087) |
|
23-319, gnl|canFam2|chr5 (44236405-44236248) |
|
23-319, gnl|hg17|chr17 (18191009-18191260) |
|
23-319, gnl|Hg17|chr19 (46501715-46502011) |
|
23-319, gnl|loxAfr1|scaffold_15630 (32391-32118) |
|
23-319, gnl|mm7|chr7 (22498576-22498776) |
|
23-319, gnl|Mm7|chr7 (22498878-22498582) |
|
23-319, gnl|oryCun1|scaffold_189143 (41877-42103) |
|
23-319, gnl|panTro1|chr19 (18597252-18597503) |
|
23-319, gnl|rheMac2|chr16 (18268096-18268347) |
|
23-319, gnl|rn3|chr1 (81007861-81008064) |
| |
|
949-1701, gnl|bosTau2|chr16 (50161593-50160849) |
|
949-1701, gnl|Hg17|chr19 (46504685-46505424) |
|
949-1701, gnl|Mm7|chr7 (3493639-3492908) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
23-319, gnl|bosTau2|chr18 (45785791-45786087) |
|
23-319, gnl|canFam2|chr5 (44236405-44236248) |
|
23-319, gnl|hg17|chr17 (18191009-18191260) |
|
23-319, gnl|Hg17|chr19 (46501715-46502011) |
|
23-319, gnl|loxAfr1|scaffold_15630 (32391-32118) |
|
23-319, gnl|mm7|chr7 (22498576-22498776) |
|
23-319, gnl|Mm7|chr7 (22498878-22498582) |
|
23-319, gnl|oryCun1|scaffold_189143 (41877-42103) |
|
23-319, gnl|panTro1|chr19 (18597252-18597503) |
|
23-319, gnl|rheMac2|chr16 (18268096-18268347) |
|
23-319, gnl|rn3|chr1 (81007861-81008064) |
| |
|
949-1701, gnl|bosTau2|chr16 (50161593-50160849) |
|
949-1701, gnl|Hg17|chr19 (46504685-46505424) |
|
949-1701, gnl|Mm7|chr7 (3493639-3492908) |
|
fce (0.543183) |
|
ese (0.506009) |
|
hyp (0.42851) |
|
tes (0.415628) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
cag (0.302389) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
jca (0.22792) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
csp (0.161186) |
|
fco (0.157208) |
|
eli (0.151814) |
|
fat (0.147427) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
fce (0.543183) |
|
ese (0.506009) |
|
hyp (0.42851) |
|
tes (0.415628) |
|
duo (0.345602) |
|
ecc (0.345105) |
|
cag (0.302389) |
|
cte (0.29274) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
jca (0.22792) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
csp (0.161186) |
|
fco (0.157208) |
|
eli (0.151814) |
|
fat (0.147427) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cbl (0.114797) |
|
spc (0.113366) |
