Non-Coding RNA Search

Ss1.1-Pig4-TMW8043I04.3

Sequence:


               
               AGAAAAGTACATCACAGACAATTACCTGGGTAAGAGGAAGGAGGTGGGCTTCAGGGACCA
CCATGGATAGGGCTGTAAAAGTATCCTGCCCAGAGCCTCTTCCCTGGGTGACAGCGCAGG
AGGCTACAGCCTGCTGCTGGGACACAAGCCCTGCCTCCTCTCCCATCAGCCGTGAGCCTG
GTCCCTTGGTGCCTCCAGAAGGTGCTCGGTGCCCATATACTTCCCTGAGTGCACAGTCGC
TTACAGAGCAGAGGGGGAGGAGGGGTAGTGAACCCCAGGTGCCCTCCCCACCCTGTGTCA
GAACAGAGTTGAGGCCCCTCTCTGGGCCTGAGCAAGGTAACCAGGTTTCTGTAACTTCTG
AAGTATGCGCTTTGGCTCAAGCTTCCAATAGATCAGAAACCCACAAAGATCAAAGCACCT
AGCATGCACAGCTGTCCTGGCTCTTTGGCCAGACCCATGGGGCGCACTGGGCATGACTCC
ACCCTCACTTCCCATTGTCAGCCCAAGGCAGGGGTCAGCCTGACCTGCTCGTTGTCCAGC
CAGGTCATCCTGACACCAGCAGGACATGCAGCCTGTCACCAAGCCCCCATGCCCTCTGGG
CACTTAACCTTTTCAAGCACTTACAGGTGGACGGCCTCCGAGGCCCCCGCGCCTCCCACA
GAGCCGGACCAGCTCCCCTCCACAACCCAGGGAACTGCTGCCCCCTTGGGTTTTCTATCT
CCTCTTTGCTGTTTGATGTCTGCTTTCGCTACCATCTTGGGACTGTTTAACCTTTTGATT
ATTTCCTCTGGTGTCTTTGTTTACCCTCCTCACTGTTCTACCTCCTGGCCAGGTCTCTCA
TCGTAGCTGCCCTGGCGTGGGGTGTTTTCCAGACCTTCCAGCCACAGCTGCCTCCCCTCA
TGCTGGCTGGCTCGGGGGAGGGGGCCCAGCTCACAGCTTCCTGTCTTGCCAAGTTGCACA
TACTCAGCGAGGCAGCAGTGGAGTGTGGAGGACAGGCGGGGTAACCCCTCTTCAGAAAGG
ACACAGCTGCAGGAGCACACAGTGGGGGGCAGGTGCCACAGGGGCCACACAGCATCAGGT
CCTGCCCATGGCCAGACTCAACTTCTCGTGGGGACCCTGACTTTGGATGACAAGGCTTTA
TCTGTAAATATGCTCTTAATATGCAACTTTGAGAATAAAATAGAAACATCATGTATTTTA
AAATATAAGATGAAGTGTGACGCACTGTATACAATTTAATATATATTTTTAGGATTTTGT
TATTTAAGAAAATGGAATGTAATGGTACTTAACTTTTACAAAAGAGAGAAAAATGTTATT
TTTACTGTCTGGAGAAAATAAATATTCTCATTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAGTACATCACAGACAATTACCTGGGTAAGAGGAAGGAGGTGGGCTTCAGGGACCA
CCATGGATAGGGCTGTAAAAGTATCCTGCCCAGAGCCTCTTCCCTGGGTGACAGCGCAGG
AGGCTACAGCCTGCTGCTGGGACACAAGCCCTGCCTCCTCTCCCATCAGCCGTGAGCCTG
GTCCCTTGGTGCCTCCAGAAGGTGCTCGGTGCCCATATACTTCCCTGAGTGCACAGTCGC
TTACAGAGCAGAGGGGGAGGAGGGGTAGTGAACCCCAGGTGCCCTCCCCACCCTGTGTCA
GAACAGAGTTGAGGCCCCTCTCTGGGCCTGAGCAAGGTAACCAGGTTTCTGTAACTTCTG
AAGTATGCGCTTTGGCTCAAGCTTCCAATAGATCAGAAACCCACAAAGATCAAAGCACCT
AGCATGCACAGCTGTCCTGGCTCTTTGGCCAGACCCATGGGGCGCACTGGGCATGACTCC
ACCCTCACTTCCCATTGTCAGCCCAAGGCAGGGGTCAGCCTGACCTGCTCGTTGTCCAGC
CAGGTCATCCTGACACCAGCAGGACATGCAGCCTGTCACCAAGCCCCCATGCCCTCTGGG
CACTTAACCTTTTCAAGCACTTACAGGTGGACGGCCTCCGAGGCCCCCGCGCCTCCCACA
GAGCCGGACCAGCTCCCCTCCACAACCCAGGGAACTGCTGCCCCCTTGGGTTTTCTATCT
CCTCTTTGCTGTTTGATGTCTGCTTTCGCTACCATCTTGGGACTGTTTAACCTTTTGATT
ATTTCCTCTGGTGTCTTTGTTTACCCTCCTCACTGTTCTACCTCCTGGCCAGGTCTCTCA
TCGTAGCTGCCCTGGCGTGGGGTGTTTTCCAGACCTTCCAGCCACAGCTGCCTCCCCTCA
TGCTGGCTGGCTCGGGGGAGGGGGCCCAGCTCACAGCTTCCTGTCTTGCCAAGTTGCACA
TACTCAGCGAGGCAGCAGTGGAGTGTGGAGGACAGGCGGGGTAACCCCTCTTCAGAAAGG
ACACAGCTGCAGGAGCACACAGTGGGGGGCAGGTGCCACAGGGGCCACACAGCATCAGGT
CCTGCCCATGGCCAGACTCAACTTCTCGTGGGGACCCTGACTTTGGATGACAAGGCTTTA
TCTGTAAATATGCTCTTAATATGCAACTTTGAGAATAAAATAGAAACATCATGTATTTTA
AAATATAAGATGAAGTGTGACGCACTGTATACAATTTAATATATATTTTTAGGATTTTGT
TATTTAAGAAAATGGAATGTAATGGTACTTAACTTTTACAAAAGAGAGAAAAATGTTATT
TTTACTGTCTGGAGAAAATAAATATTCTCATTGTTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               147-462, gnl|bosTau2|chr17 (41256194-41256502)
               

               
               147-462, gnl|Hg17|chr22 (27866045-27866422)
               


               
               483-926, gnl|bosTau2|chr17 (41257122-41257550)
               

               
               483-926, gnl|Hg17|chr22 (27866452-27866884)
               

               
               483-926, gnl|Mm7|chr11 (5144432-5144022)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-462, gnl|bosTau2|chr17 (41256194-41256502)
               

               
               147-462, gnl|Hg17|chr22 (27866045-27866422)
               


               
               483-926, gnl|bosTau2|chr17 (41257122-41257550)
               

               
               483-926, gnl|Hg17|chr22 (27866452-27866884)
               

               
               483-926, gnl|Mm7|chr11 (5144432-5144022)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               duo (0.345602)
               

               
               sme (0.305437)
               

               
               eru (0.240096)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               eru (0.240096)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

	147-462, gnl\|bosTau2\|chr17 (41256194-41256502)
	147-462, gnl\|Hg17\|chr22 (27866045-27866422)

	483-926, gnl\|bosTau2\|chr17 (41257122-41257550)
	483-926, gnl\|Hg17\|chr22 (27866452-27866884)
	483-926, gnl\|Mm7\|chr11 (5144432-5144022)

	duo (0.345602)
	sme (0.305437)
	eru (0.240096)
	cmu (0.186393)
	sto (0.179824)
	pla (0.133672)
	ova (0.129132)