Ss1.1-Pig4-TMW8043I08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCACGTCCTCCGTCCAGAAGGGCGAATCCCTGGCGGACTCAGTGCAGACCATGAGCT GCTACGCCGACGTCGTGGTGCTGCGGCACCCCCAGCCCGGGGCGGTGGAGCTGGCAGCCA AGCACTGCCGGCGGCCAGTGATCAACGCCGGGGATGGGGTTGGAGAGCATCCCACCCAGG CCTTGCTGGACATCTTCACCATCCGGGAGGAGCTGGGCACGGTCAATGGCATGACGATCA CCATGGTGGGGGACCTGAAGCACGGCCGCACGGTGCACTCGCTGGCCTGCCTGCTCACCC AGTACCGCGTCAGCCTGCGCTACGTGGCGCCGCCCAGCCTGCGCATGCCTCCCGACGTGC GGGCCTTCGTGGCCTCCCGCGGCACCAAGCAGGAGGAATTTGAGAGCATTGAGGAGGCGC TGCCCGACACCGACGTGCTCTACATGACGCGAATCCAGAAGGAGCGCTTTGGCTCCGCCC AGGAGTACGAGGCTTGCTTTGGCCAGTTCATCCTCACTCCCCACATCATGACCCGGGCCA AGAAGAAGATGGTGGTGATGCACCCGATGCCCCGCGTCAATGAGATAAGCGTGGAGGTGG ACTCGGACCCCCGAGCAGCCTACTTCCGCCAGGCTGAGAACGGCATGTACATCCGCATGG CCCTGTTGGCCACCGTGCTGGGCCGCTTCTAGGGCCCGGCTCCTTAGCCTCTTTGCAGGC CCAGCTGCCCGGCACAGAATCCAGTGCCCTCCACGGCAGCAGCGCACTTAGCAGATGCTC TGGGGCTTCCAGATAGGTCACGTGCTCACATGCACACACATGCAGACCGTGCTTCAGGCA CTGGACTGGACCGGAGCCTCTCGTGTCGGGGTGGGGCCTCAGATGCGGGGCCCAGTCTGC CCCGTCTCCCTTACTGCGCCTCAAGTATGTACAGACTTTTCTTAATAAAACAGCTAAGCT AAGCTGCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCACGTCCTCCGTCCAGAAGGGCGAATCCCTGGCGGACTCAGTGCAGACCATGAGCT GCTACGCCGACGTCGTGGTGCTGCGGCACCCCCAGCCCGGGGCGGTGGAGCTGGCAGCCA AGCACTGCCGGCGGCCAGTGATCAACGCCGGGGATGGGGTTGGAGAGCATCCCACCCAGG CCTTGCTGGACATCTTCACCATCCGGGAGGAGCTGGGCACGGTCAATGGCATGACGATCA CCATGGTGGGGGACCTGAAGCACGGCCGCACGGTGCACTCGCTGGCCTGCCTGCTCACCC AGTACCGCGTCAGCCTGCGCTACGTGGCGCCGCCCAGCCTGCGCATGCCTCCCGACGTGC GGGCCTTCGTGGCCTCCCGCGGCACCAAGCAGGAGGAATTTGAGAGCATTGAGGAGGCGC TGCCCGACACCGACGTGCTCTACATGACGCGAATCCAGAAGGAGCGCTTTGGCTCCGCCC AGGAGTACGAGGCTTGCTTTGGCCAGTTCATCCTCACTCCCCACATCATGACCCGGGCCA AGAAGAAGATGGTGGTGATGCACCCGATGCCCCGCGTCAATGAGATAAGCGTGGAGGTGG ACTCGGACCCCCGAGCAGCCTACTTCCGCCAGGCTGAGAACGGCATGTACATCCGCATGG CCCTGTTGGCCACCGTGCTGGGCCGCTTCTAGGGCCCGGCTCCTTAGCCTCTTTGCAGGC CCAGCTGCCCGGCACAGAATCCAGTGCCCTCCACGGCAGCAGCGCACTTAGCAGATGCTC TGGGGCTTCCAGATAGGTCACGTGCTCACATGCACACACATGCAGACCGTGCTTCAGGCA CTGGACTGGACCGGAGCCTCTCGTGTCGGGGTGGGGCCTCAGATGCGGGGCCCAGTCTGC CCCGTCTCCCTTACTGCGCCTCAAGTATGTACAGACTTTTCTTAATAAAACAGCTAAGCT AAGCTGCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 627-818, - strand, RNAz p=0.975726 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 627-818, - strand, RNAz p=0.975726 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr11 (52082274-52082134) | |
| 1-143, gnl|canFam2|chr17 (24200456-24200640) | |
| 1-143, gnl|danRer3|chr20 (45761193-45761017) | |
| 1-143, gnl|dasNov1|scaffold_9836 (21880-21696) | |
| 1-143, gnl|echTel1|scaffold_206966 (10553-10370) | |
| 1-143, gnl|fr1|chrUn (205553924-205553735) | |
| 1-143, gnl|galGal2|chrUn (160507438-160507621) | |
| 1-143, gnl|hg17|chr2 (27376472-27376680) | |
| 1-143, gnl|Hg17|chr2 (27376533-27376673) | |
| 1-143, gnl|loxAfr1|scaffold_42389 (6480-6295) | |
| 1-143, gnl|mm7|chr5 (30109232-30109417) | |
| 1-143, gnl|Mm7|chr5 (30109293-30109455) | |
| 1-143, gnl|monDom2|scaffold_1 (149049551-149049375) | |
| 1-143, gnl|oryCun1|scaffold_203841 (106232-106047) | |
| 1-143, gnl|panTro1|chr12 (28315553-28315738) | |
| 1-143, gnl|rheMac2|chr13 (27209506-27209691) | |
| 1-143, gnl|rn3|chr6 (25277036-25276851) | |
| 1-143, gnl|tetNig1|chr14 (9267822-9267627) | |
| 1-143, gnl|xenTro1|scaffold_1369 (94633-94841) | |
| 236-393, gnl|bosTau2|chr11 (52081640-52081483) | |
| 236-393, gnl|canFam2|chr17 (24201124-24201288) | |
| 236-393, gnl|danRer3|chr20 (45758076-45757913) | |
| 236-393, gnl|dasNov1|scaffold_9836 (21338-21174) | |
| 236-393, gnl|echTel1|scaffold_206966 (10027-9864) | |
| 236-393, gnl|fr1|chrUn (205553246-205553085) | |
| 236-393, gnl|galGal2|chrUn (160507895-160508049) | |
| 236-393, gnl|hg17|chr2 (27377134-27377298) | |
| 236-393, gnl|Hg17|chr2 (27377138-27377295) | |
| 236-393, gnl|loxAfr1|scaffold_42389 (5498-5335) | |
| 236-393, gnl|mm7|chr5 (30109862-30110026) | |
| 236-393, gnl|Mm7|chr5 (30109866-30110023) | |
| 236-393, gnl|monDom2|scaffold_1 (149044556-149044392) | |
| 236-393, gnl|oryCun1|scaffold_203841 (105646-105486) | |
| 236-393, gnl|panTro1|chr12 (28316214-28316378) | |
| 236-393, gnl|rheMac2|chr13 (27210190-27210354) | |
| 236-393, gnl|rn3|chr6 (25276487-25276323) | |
| 236-393, gnl|tetNig1|chr14 (9267155-9266997) | |
| 236-393, gnl|xenTro1|scaffold_1369 (95491-95659) | |
| 588-960, gnl|bosTau2|chr11 (52080894-52080513) | |
| 588-960, gnl|Hg17|chr2 (27377933-27378296) | |
| 588-960, gnl|Mm7|chr5 (30110607-30110992) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr11 (52082274-52082134) | |
| 1-143, gnl|canFam2|chr17 (24200456-24200640) | |
| 1-143, gnl|danRer3|chr20 (45761193-45761017) | |
| 1-143, gnl|dasNov1|scaffold_9836 (21880-21696) | |
| 1-143, gnl|echTel1|scaffold_206966 (10553-10370) | |
| 1-143, gnl|fr1|chrUn (205553924-205553735) | |
| 1-143, gnl|galGal2|chrUn (160507438-160507621) | |
| 1-143, gnl|hg17|chr2 (27376472-27376680) | |
| 1-143, gnl|Hg17|chr2 (27376533-27376673) | |
| 1-143, gnl|loxAfr1|scaffold_42389 (6480-6295) | |
| 1-143, gnl|mm7|chr5 (30109232-30109417) | |
| 1-143, gnl|Mm7|chr5 (30109293-30109455) | |
| 1-143, gnl|monDom2|scaffold_1 (149049551-149049375) | |
| 1-143, gnl|oryCun1|scaffold_203841 (106232-106047) | |
| 1-143, gnl|panTro1|chr12 (28315553-28315738) | |
| 1-143, gnl|rheMac2|chr13 (27209506-27209691) | |
| 1-143, gnl|rn3|chr6 (25277036-25276851) | |
| 1-143, gnl|tetNig1|chr14 (9267822-9267627) | |
| 1-143, gnl|xenTro1|scaffold_1369 (94633-94841) | |
| 236-393, gnl|bosTau2|chr11 (52081640-52081483) | |
| 236-393, gnl|canFam2|chr17 (24201124-24201288) | |
| 236-393, gnl|danRer3|chr20 (45758076-45757913) | |
| 236-393, gnl|dasNov1|scaffold_9836 (21338-21174) | |
| 236-393, gnl|echTel1|scaffold_206966 (10027-9864) | |
| 236-393, gnl|fr1|chrUn (205553246-205553085) | |
| 236-393, gnl|galGal2|chrUn (160507895-160508049) | |
| 236-393, gnl|hg17|chr2 (27377134-27377298) | |
| 236-393, gnl|Hg17|chr2 (27377138-27377295) | |
| 236-393, gnl|loxAfr1|scaffold_42389 (5498-5335) | |
| 236-393, gnl|mm7|chr5 (30109862-30110026) | |
| 236-393, gnl|Mm7|chr5 (30109866-30110023) | |
| 236-393, gnl|monDom2|scaffold_1 (149044556-149044392) | |
| 236-393, gnl|oryCun1|scaffold_203841 (105646-105486) | |
| 236-393, gnl|panTro1|chr12 (28316214-28316378) | |
| 236-393, gnl|rheMac2|chr13 (27210190-27210354) | |
| 236-393, gnl|rn3|chr6 (25276487-25276323) | |
| 236-393, gnl|tetNig1|chr14 (9267155-9266997) | |
| 236-393, gnl|xenTro1|scaffold_1369 (95491-95659) | |
| 588-960, gnl|bosTau2|chr11 (52080894-52080513) | |
| 588-960, gnl|Hg17|chr2 (27377933-27378296) | |
| 588-960, gnl|Mm7|chr5 (30110607-30110992) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| eli (0.151814) |