Ss1.1-Pig4-TMW8043I11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGAAGTATTTGATGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGTATCTGCAGAGC TGTCCAGTTCCCCGCCAGGACCCTACCATCAGGAGCCCTACGTCTGGAAACCAGAGGAGC GGTTTAAAGCCCCACCCATCCTCCCACCACACCTTCTCCAGGTCATCCTGAACAAGGACA CAGGCATTTCTTGTGATCCAGCTTTGCTTCCTGAGCCCAACCACGTCATGTTGAACCACC TTTACGCACTATCCATCAAGGATGGAGTGATGGTGCTCAGCGCGACCCACCGGTACAAGA AAAAATATGTCACTACCTTGTTGTACAAGCCCATATGAAGAGCTGGGAGCTACCCATGGG CTGCAGCCCCAGGCTCCACCCGTGCATGCTTCCCACTAGAAGGAATGGACTGCAGATTTC TCACTTCACACTCTTCATAAGACATTTCATACCCGCCCTTGTCCTACTTGAAGGTTTGTT CCAGACACAGCAGCTCCTGAAGCACCTCAGTCTATAACAGTCCTCTTAGTACCCAGTGCT GGGTCTGGGGACCCATCAAGGCTGAGAAGGGAGTGGGGGAAGCAGGTGCTCTGCAGCCCC CACACCGCAGGGCAGAGGGCAGCAGTGCACGTCTCAGTCAACAGCCTCTGAACTGGTTAT GGAGATTTTTCTTAAGCCAAAAATGAACACTAGGCACTTTGCTAGTGAAAATCTGGGAAG CGGGAATGGAGGCCGCACAAAATTTGGGGTCGTATATGTTTGTATTGACTTGTCCCTGCT GAGGCCTGGCCGCAGACCTGGCAGCAAGTTCAGGGTTGGTCCTACCTGTCCTCTGAAATC AAAGCAATAGGCCGTCTTCCAGTTCCTGCTCCAGGGAGGCGTAATTTCTATAGAAATTAG AACCTGTCTGGTTTCCAGATGAAGTTTGACAATTATTTCCTACATTTACGTGCACTAAGT ATTTTTGTTTCTGTTTTTAACCAGAGGTGGCTGTGACTATACAGCCTTAGGACAATTTTT AAGTCACCCTGACTAGACTACAGGTCACATGAACTATGCTCAGCAATAATCTGTTCTCAG AGCAGAGTTGGAAAACCACAGATGGATTTATTAAACTGGGAGTTTGTGTAGCTTTGTACT CAAATCATAATGAGGTGACAATGTTACCACGAAAACTTTGGAGGCACCTGATCCTAGCCT GTGCCACCCTGCTTGGGACCTCTGTCCCTTCTCAGCCAGGAAGGCTGTGGCAACTGCTGT TGTTTATTCTGGAAGAAAATTAGAACTGGCAGCAGCCTTCTGAATTTGTGCCAGGAAGAC ATCCTTTGGACCAAAGTGAATCTCTCCCCACGGCTTGGTTTCCAGGTTGATGCCAGAGAC ACAGCCATTAGCGAGGCTCCTGTCCCTGAGGGGGCGGAGGCTGCCATCATGCCCTGTGCT CCTGCTGGGAGACAGAGGAACAAGCCCCCTGGCTTCTGGTATTTATTTGGTAAACCTGCG TCCGGGATACCCCTTTTGTTACTGTTTTCAAAACACTGAATTACTGTCACTTTGATGTAC AGGTTTCAATAAAGCTTATAAAGATAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGAAGTATTTGATGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGTATCTGCAGAGC TGTCCAGTTCCCCGCCAGGACCCTACCATCAGGAGCCCTACGTCTGGAAACCAGAGGAGC GGTTTAAAGCCCCACCCATCCTCCCACCACACCTTCTCCAGGTCATCCTGAACAAGGACA CAGGCATTTCTTGTGATCCAGCTTTGCTTCCTGAGCCCAACCACGTCATGTTGAACCACC TTTACGCACTATCCATCAAGGATGGAGTGATGGTGCTCAGCGCGACCCACCGGTACAAGA AAAAATATGTCACTACCTTGTTGTACAAGCCCATATGAAGAGCTGGGAGCTACCCATGGG CTGCAGCCCCAGGCTCCACCCGTGCATGCTTCCCACTAGAAGGAATGGACTGCAGATTTC TCACTTCACACTCTTCATAAGACATTTCATACCCGCCCTTGTCCTACTTGAAGGTTTGTT CCAGACACAGCAGCTCCTGAAGCACCTCAGTCTATAACAGTCCTCTTAGTACCCAGTGCT GGGTCTGGGGACCCATCAAGGCTGAGAAGGGAGTGGGGGAAGCAGGTGCTCTGCAGCCCC CACACCGCAGGGCAGAGGGCAGCAGTGCACGTCTCAGTCAACAGCCTCTGAACTGGTTAT GGAGATTTTTCTTAAGCCAAAAATGAACACTAGGCACTTTGCTAGTGAAAATCTGGGAAG CGGGAATGGAGGCCGCACAAAATTTGGGGTCGTATATGTTTGTATTGACTTGTCCCTGCT GAGGCCTGGCCGCAGACCTGGCAGCAAGTTCAGGGTTGGTCCTACCTGTCCTCTGAAATC AAAGCAATAGGCCGTCTTCCAGTTCCTGCTCCAGGGAGGCGTAATTTCTATAGAAATTAG AACCTGTCTGGTTTCCAGATGAAGTTTGACAATTATTTCCTACATTTACGTGCACTAAGT ATTTTTGTTTCTGTTTTTAACCAGAGGTGGCTGTGACTATACAGCCTTAGGACAATTTTT AAGTCACCCTGACTAGACTACAGGTCACATGAACTATGCTCAGCAATAATCTGTTCTCAG AGCAGAGTTGGAAAACCACAGATGGATTTATTAAACTGGGAGTTTGTGTAGCTTTGTACT CAAATCATAATGAGGTGACAATGTTACCACGAAAACTTTGGAGGCACCTGATCCTAGCCT GTGCCACCCTGCTTGGGACCTCTGTCCCTTCTCAGCCAGGAAGGCTGTGGCAACTGCTGT TGTTTATTCTGGAAGAAAATTAGAACTGGCAGCAGCCTTCTGAATTTGTGCCAGGAAGAC ATCCTTTGGACCAAAGTGAATCTCTCCCCACGGCTTGGTTTCCAGGTTGATGCCAGAGAC ACAGCCATTAGCGAGGCTCCTGTCCCTGAGGGGGCGGAGGCTGCCATCATGCCCTGTGCT CCTGCTGGGAGACAGAGGAACAAGCCCCCTGGCTTCTGGTATTTATTTGGTAAACCTGCG TCCGGGATACCCCTTTTGTTACTGTTTTCAAAACACTGAATTACTGTCACTTTGATGTAC AGGTTTCAATAAAGCTTATAAAGATAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 46-190, gnl|bosTau2|chr17 (29903257-29903113) | |
| 46-190, gnl|canFam2|chr26 (18737734-18737926) | |
| 46-190, gnl|danRer3|chr10 (9410182-9410038) | |
| 46-190, gnl|dasNov1|scaffold_12566 (41314-41121) | |
| 46-190, gnl|echTel1|scaffold_290090 (126833-126631) | |
| 46-190, gnl|fr1|chrUn (138660835-138661001) | |
| 46-190, gnl|galGal2|chr15 (9565834-9565657) | |
| 46-190, gnl|hg17|chr12 (118577013-118577206) | |
| 46-190, gnl|Hg17|chr12 (118577050-118577194) | |
| 46-190, gnl|loxAfr1|scaffold_1285 (74310-74110) | |
| 46-190, gnl|mm7|chr5 (115247618-115247431) | |
| 46-190, gnl|Mm7|chr5 (115247585-115247441) | |
| 46-190, gnl|monDom2|scaffold_101 (687832-687643) | |
| 46-190, gnl|oryCun1|scaffold_191138 (144080-143888) | |
| 46-190, gnl|panTro1|chr10 (121575800-121575994) | |
| 46-190, gnl|rheMac2|chr11 (120661796-120661990) | |
| 46-190, gnl|rn3|chr12 (41710136-41710325) | |
| 46-190, gnl|tetNig1|chr4 (5211188-5211331) | |
| 46-190, gnl|xenTro1|scaffold_9 (4489796-4489963) | |
| 241-1108, gnl|bosTau2|chr17 (29901455-29900591) | |
| 241-1108, gnl|Hg17|chr12 (118580754-118581600) | |
| 1125-1354, gnl|bosTau2|chr17 (29900540-29900309) | |
| 1125-1354, gnl|canFam2|chr26 (18740356-18740522) | |
| 1125-1354, gnl|canFam2|chr26 (18740213-18740522) | |
| 1125-1354, gnl|dasNov1|scaffold_71083 (1798-1623) | |
| 1125-1354, gnl|dasNov1|scaffold_71083 (1935-1623) | |
| 1125-1354, gnl|echTel1|scaffold_290090 (125190-125025) | |
| 1125-1354, gnl|hg17|chr12 (118581641-118581836) | |
| 1125-1354, gnl|Hg17|chr12 (118581650-118581932) | |
| 1125-1354, gnl|hg17|chrX (34830274-34830589) | |
| 1125-1354, gnl|loxAfr1|scaffold_1285 (70115-69930) | |
| 1125-1354, gnl|loxAfr1|scaffold_1285 (70244-69930) | |
| 1125-1354, gnl|mm7|chr5 (115243509-115243335) | |
| 1125-1354, gnl|mm7|chr5 (115243640-115243337) | |
| 1125-1354, gnl|Mm7|chr5 (115243496-115243247) | |
| 1125-1354, gnl|oryCun1|scaffold_191138 (139775-139641) | |
| 1125-1354, gnl|panTro1|chr10 (121580434-121580629) | |
| 1125-1354, gnl|panTro1|chrX_random (45022677-45022377) | |
| 1125-1354, gnl|rheMac2|chr11 (120666188-120666388) | |
| 1125-1354, gnl|rheMac2|chrX (33078782-33079097) | |
| 1125-1354, gnl|rn3|chr12 (41714208-41714376) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-190, gnl|bosTau2|chr17 (29903257-29903113) | |
| 46-190, gnl|canFam2|chr26 (18737734-18737926) | |
| 46-190, gnl|danRer3|chr10 (9410182-9410038) | |
| 46-190, gnl|dasNov1|scaffold_12566 (41314-41121) | |
| 46-190, gnl|echTel1|scaffold_290090 (126833-126631) | |
| 46-190, gnl|fr1|chrUn (138660835-138661001) | |
| 46-190, gnl|galGal2|chr15 (9565834-9565657) | |
| 46-190, gnl|hg17|chr12 (118577013-118577206) | |
| 46-190, gnl|Hg17|chr12 (118577050-118577194) | |
| 46-190, gnl|loxAfr1|scaffold_1285 (74310-74110) | |
| 46-190, gnl|mm7|chr5 (115247618-115247431) | |
| 46-190, gnl|Mm7|chr5 (115247585-115247441) | |
| 46-190, gnl|monDom2|scaffold_101 (687832-687643) | |
| 46-190, gnl|oryCun1|scaffold_191138 (144080-143888) | |
| 46-190, gnl|panTro1|chr10 (121575800-121575994) | |
| 46-190, gnl|rheMac2|chr11 (120661796-120661990) | |
| 46-190, gnl|rn3|chr12 (41710136-41710325) | |
| 46-190, gnl|tetNig1|chr4 (5211188-5211331) | |
| 46-190, gnl|xenTro1|scaffold_9 (4489796-4489963) | |
| 241-1108, gnl|bosTau2|chr17 (29901455-29900591) | |
| 241-1108, gnl|Hg17|chr12 (118580754-118581600) | |
| 1125-1354, gnl|bosTau2|chr17 (29900540-29900309) | |
| 1125-1354, gnl|canFam2|chr26 (18740356-18740522) | |
| 1125-1354, gnl|canFam2|chr26 (18740213-18740522) | |
| 1125-1354, gnl|dasNov1|scaffold_71083 (1798-1623) | |
| 1125-1354, gnl|dasNov1|scaffold_71083 (1935-1623) | |
| 1125-1354, gnl|echTel1|scaffold_290090 (125190-125025) | |
| 1125-1354, gnl|hg17|chr12 (118581641-118581836) | |
| 1125-1354, gnl|Hg17|chr12 (118581650-118581932) | |
| 1125-1354, gnl|hg17|chrX (34830274-34830589) | |
| 1125-1354, gnl|loxAfr1|scaffold_1285 (70115-69930) | |
| 1125-1354, gnl|loxAfr1|scaffold_1285 (70244-69930) | |
| 1125-1354, gnl|mm7|chr5 (115243509-115243335) | |
| 1125-1354, gnl|mm7|chr5 (115243640-115243337) | |
| 1125-1354, gnl|Mm7|chr5 (115243496-115243247) | |
| 1125-1354, gnl|oryCun1|scaffold_191138 (139775-139641) | |
| 1125-1354, gnl|panTro1|chr10 (121580434-121580629) | |
| 1125-1354, gnl|panTro1|chrX_random (45022677-45022377) | |
| 1125-1354, gnl|rheMac2|chr11 (120666188-120666388) | |
| 1125-1354, gnl|rheMac2|chrX (33078782-33079097) | |
| 1125-1354, gnl|rn3|chr12 (41714208-41714376) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |