Ss1.1-Pig4-TMW8043I17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGAGCAAGCTTTCTCGCCATGGCAGCGGCGCCGACAGTGACTATGAGAACACACAGAG TGGGGACCCGCTGCTGGGCCTGGAAGGGAAGAGGTTTCTAGAGCTGGGCAAGGAGGAGGA CTTCCACCCCGAGCTGGAAAGCCTGGATGGAGACCTGGACCCTGGCCTTCCCAGCACAGA GGACGTCATCCTGAAGACGGAGCAGGTTACCAAGAACATTCAGGAGTTACTGCGGGCTGC CCAGGAATTCAAGCACGACAGCTTTGTGCCCTGCTCAGAAAAGATCCATCTGGCTGTGAC GGAGATGGCTTCTCTCTTCCCAAAGAGGCCAGCCCTGGAGCCAGTGCGCAGCTCGCTGCG GCTGCTCAACGCCAGCGCCTACCGGCTGCAGAGCGAGTGCCGGAAGACTGTGCCCCCGGA GCCTGGCGCCCCTGTGGACTTCCAGCTGCTGACTCAGCAGGTGATCCAGTGCGCCTATGA CATCGCCAAGGCTGCCAAGCAGCTGGTCACCATCACCACCCGAGAGAAGAAGCAGTGACC ACTCTCCCTGCACCCTCACCCGCACCCCGGGACCTCACTGGCCATGGGAGCTGGGCCACT CCAGACACTAATCCCCACCCTAACAGAGCCGCTGGCACAAGTGCCCTTAGTGCTGCCACT CTCCCCTGGCAGCCAGGTGCCCTGGTGCCCATCCCCCTCGAGCCCCCAAGAATGGGGGGG GTGAGGTGGCAGAAGCTTCTGTCCCCCACATTCCATGCACCTCTCCCTGTACATAGCATC CCCTCCCCTCTAGTGTGCAGGGGTCTACAAGGCGTCACTCCCAGCCCCTTGCCCCCTGGG GCACCCTCAGCAAAGGGTTGGGTGGGGACACTCCAAGTGGGGCGGTTCCCCTACATGCAC CCCACCCCCATGAGCCAGTCCAGCCCTATTGGGGGCTGAGTGGGGGCATCCCCCTTGTAC ATAATACCTGTGGATGTCCCCATCCTGTAGCCACCAGCCCCCTGCTGCTCTCCTCTAATG CCAAACGGCCCCAGCCTAGGGCACAGGCCCCAAACCTGTGATCCCGGGGTCCCCAGCAGC AAAACACTGGAAAAATCTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGAGCAAGCTTTCTCGCCATGGCAGCGGCGCCGACAGTGACTATGAGAACACACAGAG TGGGGACCCGCTGCTGGGCCTGGAAGGGAAGAGGTTTCTAGAGCTGGGCAAGGAGGAGGA CTTCCACCCCGAGCTGGAAAGCCTGGATGGAGACCTGGACCCTGGCCTTCCCAGCACAGA GGACGTCATCCTGAAGACGGAGCAGGTTACCAAGAACATTCAGGAGTTACTGCGGGCTGC CCAGGAATTCAAGCACGACAGCTTTGTGCCCTGCTCAGAAAAGATCCATCTGGCTGTGAC GGAGATGGCTTCTCTCTTCCCAAAGAGGCCAGCCCTGGAGCCAGTGCGCAGCTCGCTGCG GCTGCTCAACGCCAGCGCCTACCGGCTGCAGAGCGAGTGCCGGAAGACTGTGCCCCCGGA GCCTGGCGCCCCTGTGGACTTCCAGCTGCTGACTCAGCAGGTGATCCAGTGCGCCTATGA CATCGCCAAGGCTGCCAAGCAGCTGGTCACCATCACCACCCGAGAGAAGAAGCAGTGACC ACTCTCCCTGCACCCTCACCCGCACCCCGGGACCTCACTGGCCATGGGAGCTGGGCCACT CCAGACACTAATCCCCACCCTAACAGAGCCGCTGGCACAAGTGCCCTTAGTGCTGCCACT CTCCCCTGGCAGCCAGGTGCCCTGGTGCCCATCCCCCTCGAGCCCCCAAGAATGGGGGGG GTGAGGTGGCAGAAGCTTCTGTCCCCCACATTCCATGCACCTCTCCCTGTACATAGCATC CCCTCCCCTCTAGTGTGCAGGGGTCTACAAGGCGTCACTCCCAGCCCCTTGCCCCCTGGG GCACCCTCAGCAAAGGGTTGGGTGGGGACACTCCAAGTGGGGCGGTTCCCCTACATGCAC CCCACCCCCATGAGCCAGTCCAGCCCTATTGGGGGCTGAGTGGGGGCATCCCCCTTGTAC ATAATACCTGTGGATGTCCCCATCCTGTAGCCACCAGCCCCCTGCTGCTCTCCTCTAATG CCAAACGGCCCCAGCCTAGGGCACAGGCCCCAAACCTGTGATCCCGGGGTCCCCAGCAGC AAAACACTGGAAAAATCTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 78-967, - strand, RNAz p=0.997682 | |
| 442-561, - strand, RNAz p=0.533279 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 78-967, - strand, RNAz p=0.997682 | |
| 442-561, - strand, RNAz p=0.533279 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 78-261, gnl|bosTau2|chr19 (14062903-14063086) | |
| 78-261, gnl|canFam2|chr9 (47003488-47003644) | |
| 78-261, gnl|danRer3|chr5 (10068325-10068476) | |
| 78-261, gnl|dasNov1|scaffold_101389 (4015-3859) | |
| 78-261, gnl|echTel1|scaffold_319342 (128575-128419) | |
| 78-261, gnl|fr1|chrUn (1799355-1799513) | |
| 78-261, gnl|galGal2|chr15 (6816360-6816509) | |
| 78-261, gnl|hg17|chr17 (24926430-24926586) | |
| 78-261, gnl|Hg17|chr17 (24926615-24926432) | |
| 78-261, gnl|loxAfr1|scaffold_5024 (20312-20467) | |
| 78-261, gnl|mm7|chr11 (77587641-77587485) | |
| 78-261, gnl|Mm7|chr11 (77587454-77587637) | |
| 78-261, gnl|monDom2|scaffold_192 (383067-382916) | |
| 78-261, gnl|oryCun1|scaffold_205469 (869-1025) | |
| 78-261, gnl|panTro1|chr19 (28277952-28278108) | |
| 78-261, gnl|rheMac2|chr16 (24807542-24807698) | |
| 78-261, gnl|rn3|chr10 (66625301-66625457) | |
| 78-261, gnl|tetNig1|chrUn_random (15130761-15130596) | |
| 78-261, gnl|xenTro1|scaffold_370 (106633-106788) | |
| 297-967, gnl|bosTau2|chr19 (14063400-14064069) | |
| 297-967, gnl|Hg17|chr17 (24926096-24925416) | |
| 297-967, gnl|Mm7|chr11 (77587931-77588607) | |
| 344-538, gnl|bosTau2|chr17 (35948514-35948320) | |
| 344-538, gnl|Hg17|chr12 (108833697-108833501) | |
| 344-538, gnl|Mm7|chr5 (113951209-113951015) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-261, gnl|bosTau2|chr19 (14062903-14063086) | |
| 78-261, gnl|canFam2|chr9 (47003488-47003644) | |
| 78-261, gnl|danRer3|chr5 (10068325-10068476) | |
| 78-261, gnl|dasNov1|scaffold_101389 (4015-3859) | |
| 78-261, gnl|echTel1|scaffold_319342 (128575-128419) | |
| 78-261, gnl|fr1|chrUn (1799355-1799513) | |
| 78-261, gnl|galGal2|chr15 (6816360-6816509) | |
| 78-261, gnl|hg17|chr17 (24926430-24926586) | |
| 78-261, gnl|Hg17|chr17 (24926615-24926432) | |
| 78-261, gnl|loxAfr1|scaffold_5024 (20312-20467) | |
| 78-261, gnl|mm7|chr11 (77587641-77587485) | |
| 78-261, gnl|Mm7|chr11 (77587454-77587637) | |
| 78-261, gnl|monDom2|scaffold_192 (383067-382916) | |
| 78-261, gnl|oryCun1|scaffold_205469 (869-1025) | |
| 78-261, gnl|panTro1|chr19 (28277952-28278108) | |
| 78-261, gnl|rheMac2|chr16 (24807542-24807698) | |
| 78-261, gnl|rn3|chr10 (66625301-66625457) | |
| 78-261, gnl|tetNig1|chrUn_random (15130761-15130596) | |
| 78-261, gnl|xenTro1|scaffold_370 (106633-106788) | |
| 297-967, gnl|bosTau2|chr19 (14063400-14064069) | |
| 297-967, gnl|Hg17|chr17 (24926096-24925416) | |
| 297-967, gnl|Mm7|chr11 (77587931-77588607) | |
| 344-538, gnl|bosTau2|chr17 (35948514-35948320) | |
| 344-538, gnl|Hg17|chr12 (108833697-108833501) | |
| 344-538, gnl|Mm7|chr5 (113951209-113951015) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.133672) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cty (0.10408) |