Non-Coding RNA Search

Ss1.1-Pig4-TMW8043J05.5

Sequence:


               
               GAGTGCTGGCCTCAGCCCCCAGGATACTTGGACCTCAGTGGCCACACTGTGTCAGGGGTG
GTCCCACCTAAGGATGTTTGCACAGGAATATCAGATGGGAAAATCACAGCCTGTTTGGAT
GGACTGTACTGCCGTATCCTCAGAGGACACTAGGGGGCAAGAGGCCCTCACAGAAAAACT
CAGGCTTGACTTTTAAAAGGGACTTTCTGCCCACTTTTCATGCACACCTTGGGCAGGCCA
GTCGTCCTGAACTCAGCAGACACCTTGGAATGTCCTTTGCGCCCATTCAAGGGTGCAGAA
CTGAAGCTTCAGAAGGAATTTGGAACTCTACCCTCTTCTCCGTAAAATAAACAAAGGTTC
CTAACCAAGTGGACTTTTTAAAAGCCAAAGTGCCCTTCACTTTGGCTCAGACTGAGGGGC
ACCAGCCCCAAACAGGAAAACTCAGGCAGATTTCAAGGAGACTGTTGACCTATCACCATT
TATTATTTCAGCACTGTAACTGAGGAGCCTGAATTGCTGGCTCTTCTTCCCTTTGCATTT
GTGTAAGGAGCACTGTACTCCTATAAAAGGTTTTAAGATACAAAATGTACAAGAAAACAA
CAATCTCAAGTGCCGTAAACATAACTGAGAACCAGTTCCTTAACTGACCCGTTTTATAAA
ATACAAGGTTTCAACTTGAGCCCATCTGAGCCTTACAGATGACCATCTCTTCTGAGATTC
AAAAAACAGGGCTTCACAGCCAGGCCAAGTGAAGCTCTGGTGATAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGCTGGCCTCAGCCCCCAGGATACTTGGACCTCAGTGGCCACACTGTGTCAGGGGTG
GTCCCACCTAAGGATGTTTGCACAGGAATATCAGATGGGAAAATCACAGCCTGTTTGGAT
GGACTGTACTGCCGTATCCTCAGAGGACACTAGGGGGCAAGAGGCCCTCACAGAAAAACT
CAGGCTTGACTTTTAAAAGGGACTTTCTGCCCACTTTTCATGCACACCTTGGGCAGGCCA
GTCGTCCTGAACTCAGCAGACACCTTGGAATGTCCTTTGCGCCCATTCAAGGGTGCAGAA
CTGAAGCTTCAGAAGGAATTTGGAACTCTACCCTCTTCTCCGTAAAATAAACAAAGGTTC
CTAACCAAGTGGACTTTTTAAAAGCCAAAGTGCCCTTCACTTTGGCTCAGACTGAGGGGC
ACCAGCCCCAAACAGGAAAACTCAGGCAGATTTCAAGGAGACTGTTGACCTATCACCATT
TATTATTTCAGCACTGTAACTGAGGAGCCTGAATTGCTGGCTCTTCTTCCCTTTGCATTT
GTGTAAGGAGCACTGTACTCCTATAAAAGGTTTTAAGATACAAAATGTACAAGAAAACAA
CAATCTCAAGTGCCGTAAACATAACTGAGAACCAGTTCCTTAACTGACCCGTTTTATAAA
ATACAAGGTTTCAACTTGAGCCCATCTGAGCCTTACAGATGACCATCTCTTCTGAGATTC
AAAAAACAGGGCTTCACAGCCAGGCCAAGTGAAGCTCTGGTGATAGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-429, - strand, RNAz p=0.987284
               

               
               648-766, + strand, RNAz p=0.650881

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-429, - strand, RNAz p=0.987284
               

               
               648-766, + strand, RNAz p=0.650881

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC030146, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC030146, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-766, gnl|bosTau2|chr18 (14745803-14746589)
               

               
               1-766, gnl|Hg17|chr16 (66821144-66820362)
               

               
               1-766, gnl|Mm7|chr8 (104729927-104729114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-766, gnl|bosTau2|chr18 (14745803-14746589)
               

               
               1-766, gnl|Hg17|chr16 (66821144-66820362)
               

               
               1-766, gnl|Mm7|chr8 (104729927-104729114)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               sin (0.174948)

	320-429, - strand, RNAz p=0.987284
	648-766, + strand, RNAz p=0.650881

	1-766, gnl\|bosTau2\|chr18 (14745803-14746589)
	1-766, gnl\|Hg17\|chr16 (66821144-66820362)
	1-766, gnl\|Mm7\|chr8 (104729927-104729114)