Ss1.1-Pig4-TMW8043J06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGTGCGAGTTCATTGAGGACTGCGAGTTCACGGTGCTGGCTACCCGCATCCTGCATCT CCTGGGCCAGGATGGGCCCAAGACCAACAACCCCTCCAAGTACATCCGCTTCATCTACAA CCGGGTGGTCTTGGAACATGAGGAAGTCCGAGCAGGAGCTGTGAGTGCTCTGGCCAAGTT TGGAGCTCAGAATGAAGAGATGTTACCCAGTATCTTGGTGTTGCTGAAGAGGTGTGTGAT GGATGATGACAATGAAGTGAGGGACCGAGCCACCTTCTATCTCAATGTCCTGGAGCAGAA GCAGAAGGCCCTTAATGCTGGCTACATCCTAAATGGTCTGACGGTGTCCATCCCTGGTCT GGAGAGGGCTCTGCAGCAGTACACACTGGAACCGTCAGAAAAACCTTTTGACCTCAAGTC TGTGCCCCTGGCCACCACGCCCATGGCAGAGCAGAGAACAGAAAGCACGCCCATCACAGC AGCCAAGCAGCCTGAGAAGGTGGCAGCCACCCGGCAAGAAATCTTCCAAGAGCAGCTGGC GGCAGTGCCCGAGTTCCAGGGGCTGGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC TCTCACCGAGTCAGAGACAGAGTATGTCATCCGCTGCACCAAGCACACCTTCACCAACCA CATGGTGTTCCAGTTTGACTGCACGAACACACTGAACGACCAAACCCTGGAGAATGTCAC CGTGCAGATGGAGCCCACCGAGGCCTATGAGGTACTGTGCTACGTTCCTGCCCGGAGCCT CCCTTACAACCAGCCTGGGACCTGCTACACACTGGTGGCACTGCCCAAGGAAGACCCCAC TGCAGTGGCCTGCACGTTCAGCTGCATGATGAAGTTCACTGTCAAGGACTGTGACCCTAC CACTGGGGAGACTGATGACGAGGGATATGAAGACGAGTATGTGCTGGAAGATCTGGAAGT CACTATCGCCGATCACATCCAAAAGGTCATGAAGCTGAACTTTGAGGCGGCCTGGGATGA GGTAGGGGATGAATTTGAGAAGGAGGAGACATTCACCTTATCTACCATCAAGACACTAGA AGAGGCCGTGGGCAATATTGTGAAATTCTTAGGAATGCACCCTTGTGAGAGATCAGACAA AGTGCCAGATAACAAGAATACTCACACGCTGCTCCTGGCTGGCGTGTTCCGGGGCGGTCA TGACATCCTGGTACGCTCCCGGCTGCTGCTCTTGGACACAGTAACGATGCAGGTGACCGC CAGGAGTTCAGAAGAGCTGCCAGTAGACATCGTCTTGGCATCTGTGGGCTAAGGCACCTG CCTGCCTGGGCCCTACTTCTACCCTCCCCATTGCCCTGTGATACTATGTGGAAGTCACAC CTTCCTCGTGAACCGTCGGAAACTCCTTTCCAAGCCTCTGTATTCAAACCAATTAGGAAT CATTGAGGGCTTTGTTTTTTGTTTTGTGTGTGTGTGTGTTTTTTTGTTTTTGTTTCTTTT TTTTAAGGTTTAACCCCTGCCCCAAGATTGCTGGGGGTAAGTTTTTAAATAGAGTGACAT TATCTTGTCCTGGAACTTGCTGCCGTGCCTGCTAGGGAAGGGATATCGCAAGTGAATAAA GTGCACACACCACCTCTTGAATCTATCTGCTAAGAAACCATCTTATTCCTATAAATAAAT CAGCATGTATTTATTGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGTGCGAGTTCATTGAGGACTGCGAGTTCACGGTGCTGGCTACCCGCATCCTGCATCT CCTGGGCCAGGATGGGCCCAAGACCAACAACCCCTCCAAGTACATCCGCTTCATCTACAA CCGGGTGGTCTTGGAACATGAGGAAGTCCGAGCAGGAGCTGTGAGTGCTCTGGCCAAGTT TGGAGCTCAGAATGAAGAGATGTTACCCAGTATCTTGGTGTTGCTGAAGAGGTGTGTGAT GGATGATGACAATGAAGTGAGGGACCGAGCCACCTTCTATCTCAATGTCCTGGAGCAGAA GCAGAAGGCCCTTAATGCTGGCTACATCCTAAATGGTCTGACGGTGTCCATCCCTGGTCT GGAGAGGGCTCTGCAGCAGTACACACTGGAACCGTCAGAAAAACCTTTTGACCTCAAGTC TGTGCCCCTGGCCACCACGCCCATGGCAGAGCAGAGAACAGAAAGCACGCCCATCACAGC AGCCAAGCAGCCTGAGAAGGTGGCAGCCACCCGGCAAGAAATCTTCCAAGAGCAGCTGGC GGCAGTGCCCGAGTTCCAGGGGCTGGGGCCCCTCTTCAAGTCCTCGCCTGAGCCCGTGGC TCTCACCGAGTCAGAGACAGAGTATGTCATCCGCTGCACCAAGCACACCTTCACCAACCA CATGGTGTTCCAGTTTGACTGCACGAACACACTGAACGACCAAACCCTGGAGAATGTCAC CGTGCAGATGGAGCCCACCGAGGCCTATGAGGTACTGTGCTACGTTCCTGCCCGGAGCCT CCCTTACAACCAGCCTGGGACCTGCTACACACTGGTGGCACTGCCCAAGGAAGACCCCAC TGCAGTGGCCTGCACGTTCAGCTGCATGATGAAGTTCACTGTCAAGGACTGTGACCCTAC CACTGGGGAGACTGATGACGAGGGATATGAAGACGAGTATGTGCTGGAAGATCTGGAAGT CACTATCGCCGATCACATCCAAAAGGTCATGAAGCTGAACTTTGAGGCGGCCTGGGATGA GGTAGGGGATGAATTTGAGAAGGAGGAGACATTCACCTTATCTACCATCAAGACACTAGA AGAGGCCGTGGGCAATATTGTGAAATTCTTAGGAATGCACCCTTGTGAGAGATCAGACAA AGTGCCAGATAACAAGAATACTCACACGCTGCTCCTGGCTGGCGTGTTCCGGGGCGGTCA TGACATCCTGGTACGCTCCCGGCTGCTGCTCTTGGACACAGTAACGATGCAGGTGACCGC CAGGAGTTCAGAAGAGCTGCCAGTAGACATCGTCTTGGCATCTGTGGGCTAAGGCACCTG CCTGCCTGGGCCCTACTTCTACCCTCCCCATTGCCCTGTGATACTATGTGGAAGTCACAC CTTCCTCGTGAACCGTCGGAAACTCCTTTCCAAGCCTCTGTATTCAAACCAATTAGGAAT CATTGAGGGCTTTGTTTTTTGTTTTGTGTGTGTGTGTGTTTTTTTGTTTTTGTTTCTTTT TTTTAAGGTTTAACCCCTGCCCCAAGATTGCTGGGGGTAAGTTTTTAAATAGAGTGACAT TATCTTGTCCTGGAACTTGCTGCCGTGCCTGCTAGGGAAGGGATATCGCAAGTGAATAAA GTGCACACACCACCTCTTGAATCTATCTGCTAAGAAACCATCTTATTCCTATAAATAAAT CAGCATGTATTTATTGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 1-159, gnl|bosTau2|chr22 (47539056-47539214) | |
| 1-159, gnl|canFam2|chr20 (5852395-5852176) | |
| 1-159, gnl|danRer3|chr4 (16063291-16063093) | |
| 1-159, gnl|dasNov1|scaffold_26531 (15513-15291) | |
| 1-159, gnl|echTel1|scaffold_314333 (6066-5841) | |
| 1-159, gnl|fr1|chrUn (75913433-75913629) | |
| 1-159, gnl|galGal2|chr12 (9159124-9159336) | |
| 1-159, gnl|hg17|chr3 (130467142-130467365) | |
| 1-159, gnl|Hg17|chr3 (130467179-130467337) | |
| 1-159, gnl|loxAfr1|scaffold_16553 (50834-51057) | |
| 1-159, gnl|mm7|chr6 (87977343-87977565) | |
| 1-159, gnl|Mm7|chr6 (87977380-87977538) | |
| 1-159, gnl|monDom2|scaffold_5 (47699470-47699249) | |
| 1-159, gnl|oryCun1|scaffold_81500 (4022-4245) | |
| 1-159, gnl|panTro1|chr2 (132520153-132520376) | |
| 1-159, gnl|rheMac2|chr11 (85576034-85575811) | |
| 1-159, gnl|rn3|chr4 (122369240-122369462) | |
| 1-159, gnl|tetNig1|chr19 (2572691-2572495) | |
| 1-159, gnl|xenTro1|scaffold_72 (1456361-1456163) | |
| 230-337, gnl|bosTau2|chr22 (47540981-47541088) | |
| 230-337, gnl|canFam2|chr20 (5847136-5847045) | |
| 230-337, gnl|danRer3|chr4 (16062302-16062213) | |
| 230-337, gnl|dasNov1|scaffold_26531 (13531-13440) | |
| 230-337, gnl|echTel1|scaffold_78304 (1524-1435) | |
| 230-337, gnl|fr1|chrUn (75913864-75913955) | |
| 230-337, gnl|galGal2|chr12 (9159981-9160074) | |
| 230-337, gnl|hg17|chr3 (130469474-130469565) | |
| 230-337, gnl|Hg17|chr3 (130469476-130469583) | |
| 230-337, gnl|loxAfr1|scaffold_16553 (53049-53140) | |
| 230-337, gnl|mm7|chr6 (87979177-87979268) | |
| 230-337, gnl|Mm7|chr6 (87979179-87979286) | |
| 230-337, gnl|monDom2|scaffold_5 (47698550-47698460) | |
| 230-337, gnl|oryCun1|scaffold_81500 (6985-7076) | |
| 230-337, gnl|panTro1|chr2 (132522487-132522578) | |
| 230-337, gnl|rheMac2|chr11 (85573468-85573377) | |
| 230-337, gnl|rn3|chr4 (122371035-122371126) | |
| 230-337, gnl|tetNig1|chr19 (2572266-2572175) | |
| 230-337, gnl|xenTro1|scaffold_72 (1455512-1455421) | |
| 668-845, gnl|bosTau2|chr4 (50955359-50955182) | |
| 668-845, gnl|Hg17|chr3 (130473779-130473956) | |
| 668-845, gnl|Mm7|chr6 (30739911-30739734) | |
| 669-843, gnl|bosTau2|chr22 (47518273-47518447) | |
| 669-843, gnl|Hg17|chr3 (130473780-130473954) | |
| 669-843, gnl|Mm7|chr6 (87982898-87983072) | |
| 943-1080, gnl|bosTau2|chr22 (47520751-47520888) | |
| 943-1080, gnl|canFam2|chr20 (5839430-5839284) | |
| 943-1080, gnl|danRer3|chr4 (16059389-16059243) | |
| 943-1080, gnl|dasNov1|scaffold_26531 (7288-7047) | |
| 943-1080, gnl|echTel1|scaffold_241473 (503-655) | |
| 943-1080, gnl|fr1|chrUn (75914969-75915118) | |
| 943-1080, gnl|galGal2|chr12 (9164992-9165137) | |
| 943-1080, gnl|hg17|chr3 (130476377-130476527) | |
| 943-1080, gnl|Hg17|chr3 (130476378-130476515) | |
| 943-1080, gnl|loxAfr1|scaffold_28364 (7963-7814) | |
| 943-1080, gnl|mm7|chr6 (87984755-87984905) | |
| 943-1080, gnl|Mm7|chr6 (87984756-87984893) | |
| 943-1080, gnl|monDom2|scaffold_5 (47692775-47692625) | |
| 943-1080, gnl|oryCun1|scaffold_129777 (17901-17754) | |
| 943-1080, gnl|panTro1|chr2_random (9089595-9089745) | |
| 943-1080, gnl|rheMac2|chr3 (167899387-167899237) | |
| 943-1080, gnl|rn3|chr4 (122376333-122376483) | |
| 943-1080, gnl|tetNig1|chr19 (2571065-2570918) | |
| 943-1080, gnl|xenTro1|scaffold_72 (1451734-1451589) | |
| 1174-1469, gnl|bosTau2|chr22 (47523061-47523351) | |
| 1174-1469, gnl|Hg17|chr3 (130478827-130479108) | |
| 1174-1469, gnl|Mm7|chr6 (87987257-87987524) | |
| 1480-1697, gnl|bosTau2|chr22 (47523332-47523555) | |
| 1480-1697, gnl|Hg17|chr3 (130479093-130479313) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-159, gnl|bosTau2|chr22 (47539056-47539214) | |
| 1-159, gnl|canFam2|chr20 (5852395-5852176) | |
| 1-159, gnl|danRer3|chr4 (16063291-16063093) | |
| 1-159, gnl|dasNov1|scaffold_26531 (15513-15291) | |
| 1-159, gnl|echTel1|scaffold_314333 (6066-5841) | |
| 1-159, gnl|fr1|chrUn (75913433-75913629) | |
| 1-159, gnl|galGal2|chr12 (9159124-9159336) | |
| 1-159, gnl|hg17|chr3 (130467142-130467365) | |
| 1-159, gnl|Hg17|chr3 (130467179-130467337) | |
| 1-159, gnl|loxAfr1|scaffold_16553 (50834-51057) | |
| 1-159, gnl|mm7|chr6 (87977343-87977565) | |
| 1-159, gnl|Mm7|chr6 (87977380-87977538) | |
| 1-159, gnl|monDom2|scaffold_5 (47699470-47699249) | |
| 1-159, gnl|oryCun1|scaffold_81500 (4022-4245) | |
| 1-159, gnl|panTro1|chr2 (132520153-132520376) | |
| 1-159, gnl|rheMac2|chr11 (85576034-85575811) | |
| 1-159, gnl|rn3|chr4 (122369240-122369462) | |
| 1-159, gnl|tetNig1|chr19 (2572691-2572495) | |
| 1-159, gnl|xenTro1|scaffold_72 (1456361-1456163) | |
| 230-337, gnl|bosTau2|chr22 (47540981-47541088) | |
| 230-337, gnl|canFam2|chr20 (5847136-5847045) | |
| 230-337, gnl|danRer3|chr4 (16062302-16062213) | |
| 230-337, gnl|dasNov1|scaffold_26531 (13531-13440) | |
| 230-337, gnl|echTel1|scaffold_78304 (1524-1435) | |
| 230-337, gnl|fr1|chrUn (75913864-75913955) | |
| 230-337, gnl|galGal2|chr12 (9159981-9160074) | |
| 230-337, gnl|hg17|chr3 (130469474-130469565) | |
| 230-337, gnl|Hg17|chr3 (130469476-130469583) | |
| 230-337, gnl|loxAfr1|scaffold_16553 (53049-53140) | |
| 230-337, gnl|mm7|chr6 (87979177-87979268) | |
| 230-337, gnl|Mm7|chr6 (87979179-87979286) | |
| 230-337, gnl|monDom2|scaffold_5 (47698550-47698460) | |
| 230-337, gnl|oryCun1|scaffold_81500 (6985-7076) | |
| 230-337, gnl|panTro1|chr2 (132522487-132522578) | |
| 230-337, gnl|rheMac2|chr11 (85573468-85573377) | |
| 230-337, gnl|rn3|chr4 (122371035-122371126) | |
| 230-337, gnl|tetNig1|chr19 (2572266-2572175) | |
| 230-337, gnl|xenTro1|scaffold_72 (1455512-1455421) | |
| 668-845, gnl|bosTau2|chr4 (50955359-50955182) | |
| 668-845, gnl|Hg17|chr3 (130473779-130473956) | |
| 668-845, gnl|Mm7|chr6 (30739911-30739734) | |
| 669-843, gnl|bosTau2|chr22 (47518273-47518447) | |
| 669-843, gnl|Hg17|chr3 (130473780-130473954) | |
| 669-843, gnl|Mm7|chr6 (87982898-87983072) | |
| 943-1080, gnl|bosTau2|chr22 (47520751-47520888) | |
| 943-1080, gnl|canFam2|chr20 (5839430-5839284) | |
| 943-1080, gnl|danRer3|chr4 (16059389-16059243) | |
| 943-1080, gnl|dasNov1|scaffold_26531 (7288-7047) | |
| 943-1080, gnl|echTel1|scaffold_241473 (503-655) | |
| 943-1080, gnl|fr1|chrUn (75914969-75915118) | |
| 943-1080, gnl|galGal2|chr12 (9164992-9165137) | |
| 943-1080, gnl|hg17|chr3 (130476377-130476527) | |
| 943-1080, gnl|Hg17|chr3 (130476378-130476515) | |
| 943-1080, gnl|loxAfr1|scaffold_28364 (7963-7814) | |
| 943-1080, gnl|mm7|chr6 (87984755-87984905) | |
| 943-1080, gnl|Mm7|chr6 (87984756-87984893) | |
| 943-1080, gnl|monDom2|scaffold_5 (47692775-47692625) | |
| 943-1080, gnl|oryCun1|scaffold_129777 (17901-17754) | |
| 943-1080, gnl|panTro1|chr2_random (9089595-9089745) | |
| 943-1080, gnl|rheMac2|chr3 (167899387-167899237) | |
| 943-1080, gnl|rn3|chr4 (122376333-122376483) | |
| 943-1080, gnl|tetNig1|chr19 (2571065-2570918) | |
| 943-1080, gnl|xenTro1|scaffold_72 (1451734-1451589) | |
| 1174-1469, gnl|bosTau2|chr22 (47523061-47523351) | |
| 1174-1469, gnl|Hg17|chr3 (130478827-130479108) | |
| 1174-1469, gnl|Mm7|chr6 (87987257-87987524) | |
| 1480-1697, gnl|bosTau2|chr22 (47523332-47523555) | |
| 1480-1697, gnl|Hg17|chr3 (130479093-130479313) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| lnt (0.569233) | |
| nca (0.410621) | |
| che (0.408942) | |
| elu (0.385356) | |
| cly (0.361925) | |
| eru (0.360144) | |
| spl (0.286369) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.569233) | |
| nca (0.410621) | |
| che (0.408942) | |
| elu (0.385356) | |
| cly (0.361925) | |
| eru (0.360144) | |
| spl (0.286369) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |