Non-Coding RNA Search

Ss1.1-Pig4-TMW8043J07.5

Sequence:


               
               AATACAAGTAAACAGGTTTGCAGAGTTAAACCTAAATGCTAGCTGGTCCAGGTACATCCT
TGAGGTTCAAAACTGACGACAGAGTAGGGAAGGCCATTGAATAACTTCCTTTTAATTGAT
TATTTTACTGGCTATAAATTTTTAATGTGATAATTGAAAAAAAATTTAGAAAGTATGGAA
AGTTACTTTTTTTTTTTTTGGCTATTCCTTCGGCATGCAGAAGTCCCATGGCCAGGGATC
AAACCCTTGCCACAGCAGCCACAAAGCCAGATCCTTAACCTGCTGAGCCACCAGGGAGCT
CCTGTTCTTGTTTTTTTAAAGCAGAAGATAAGTCAGTTATAATCCTGGGTCCTACCATCC
AGAGGCAACTACTAGTAACATTTGGCATTCTTCCATCTAGTGTTTTCCTACTTTAAAAAA
AAAATAATAGAACTCATGCAATACAAACAACCCAGTTAACGGCTTTGCTTGTCTAACATT
GTTTTATAACATCTCCCAGTTAATTATTCAAGACCATAACTTTTCATGGCTGCATGACGT
TTAATCAAATGGATATACCATTATTTATTTAACTTTTGCTCAGTTGTTGGATACTTAGGT
ATAATGCTTATGTATAATATTATAAGTATTATAGTGTTATATGCTATAATAAACATCTTT
GTGCATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATACAAGTAAACAGGTTTGCAGAGTTAAACCTAAATGCTAGCTGGTCCAGGTACATCCT
TGAGGTTCAAAACTGACGACAGAGTAGGGAAGGCCATTGAATAACTTCCTTTTAATTGAT
TATTTTACTGGCTATAAATTTTTAATGTGATAATTGAAAAAAAATTTAGAAAGTATGGAA
AGTTACTTTTTTTTTTTTTGGCTATTCCTTCGGCATGCAGAAGTCCCATGGCCAGGGATC
AAACCCTTGCCACAGCAGCCACAAAGCCAGATCCTTAACCTGCTGAGCCACCAGGGAGCT
CCTGTTCTTGTTTTTTTAAAGCAGAAGATAAGTCAGTTATAATCCTGGGTCCTACCATCC
AGAGGCAACTACTAGTAACATTTGGCATTCTTCCATCTAGTGTTTTCCTACTTTAAAAAA
AAAATAATAGAACTCATGCAATACAAACAACCCAGTTAACGGCTTTGCTTGTCTAACATT
GTTTTATAACATCTCCCAGTTAATTATTCAAGACCATAACTTTTCATGGCTGCATGACGT
TTAATCAAATGGATATACCATTATTTATTTAACTTTTGCTCAGTTGTTGGATACTTAGGT
ATAATGCTTATGTATAATATTATAAGTATTATAGTGTTATATGCTATAATAAACATCTTT
GTGCATAAAAAAAAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               7-199, gnl|bosTau2|chr15 (50943755-50943953)
               

               
               7-199, gnl|Hg17|chr11 (57359488-57360312)
               


               
               384-629, gnl|bosTau2|chr15 (50944003-50944255)
               

               
               384-629, gnl|Hg17|chr11 (57360380-57360620)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-199, gnl|bosTau2|chr15 (50943755-50943953)
               

               
               7-199, gnl|Hg17|chr11 (57359488-57360312)
               


               
               384-629, gnl|bosTau2|chr15 (50944003-50944255)
               

               
               384-629, gnl|Hg17|chr11 (57360380-57360620)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	7-199, gnl\|bosTau2\|chr15 (50943755-50943953)
	7-199, gnl\|Hg17\|chr11 (57359488-57360312)

	384-629, gnl\|bosTau2\|chr15 (50944003-50944255)
	384-629, gnl\|Hg17\|chr11 (57360380-57360620)

	amn (0.417711)
	fbs (0.175346)
	rec (0.17307)
	nmm (0.132802)
	ova (0.129132)
	cty (0.10408)