Non-Coding RNA Search

Ss1.1-Pig4-TMW8043J10.5

Sequence:


               
               AAACTTTGACCCAAAAAAGCTTTCATACAGGTAGAAATATTTTTGTGGGTTGCCCATTGG
GAAACTATGCAGCTGCTTCTCCTGTGGTCTAGCACCCCCTGCTGGTCAGTGACATAACTG
TCCTGACTTCAGGGATGTCAGAGTGGTAACAGATGGAAAACAGTGTATATCAAACATTTT
CATTTTTCTTGAATTCATTGAGTGAAAAGCAAATTATCTTTCTTCTGTAAACTATTTATT
GGCCAGAAATAGCTTTCACGGAGTAGTTGTGGTCTCCTGCGCTCTTGTTTTTGTTATTTG
TATGCCAAGATCACTGTCTGTTTTGGCCCTAAGTACAGGGAAGACCAAAGATGCCCCCAT
TTGAGGCCTGGGATCCCCAAACTTATGTGCTCCAATGAACTGTAAGAGCATTTTTGGGCA
CCCCAGGAGTCAGAAGTGTTTTTTTTACTAAGACAAGTATTATAGAACAAAAACTCTAAT
GCTAAGTTACTTGCTATCATTACAGAAATGTTCTTTTACTAAGTTATTGCTGGTCATCGA
ATATCTTGTCAGATAACCAGGTGTGTTACCAAGAAGGAAATTTATATTTCTCACCGTGTT
TTGTTAAACAAATGTGAATGATTTTTTAAAGGAAAAAAGGCCTATGGTGAGATTTGTGTG
CTATTGTTCATAATTCTAGGAGTTATAAATTGCTTTGAACCTCTGCTTGAGTGTATTTTT
CTACCCAGGTCTATATTTCTGCAATTTTCTTCTTAAAAAAAAAAAAAGACAAAAAAAGTA
ACTATGTCATACACACATTAAAGTGTTCTTGGTTTTATATATCAAAAATAAAAACTTTTT
CTTTTTCTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTGACCCAAAAAAGCTTTCATACAGGTAGAAATATTTTTGTGGGTTGCCCATTGG
GAAACTATGCAGCTGCTTCTCCTGTGGTCTAGCACCCCCTGCTGGTCAGTGACATAACTG
TCCTGACTTCAGGGATGTCAGAGTGGTAACAGATGGAAAACAGTGTATATCAAACATTTT
CATTTTTCTTGAATTCATTGAGTGAAAAGCAAATTATCTTTCTTCTGTAAACTATTTATT
GGCCAGAAATAGCTTTCACGGAGTAGTTGTGGTCTCCTGCGCTCTTGTTTTTGTTATTTG
TATGCCAAGATCACTGTCTGTTTTGGCCCTAAGTACAGGGAAGACCAAAGATGCCCCCAT
TTGAGGCCTGGGATCCCCAAACTTATGTGCTCCAATGAACTGTAAGAGCATTTTTGGGCA
CCCCAGGAGTCAGAAGTGTTTTTTTTACTAAGACAAGTATTATAGAACAAAAACTCTAAT
GCTAAGTTACTTGCTATCATTACAGAAATGTTCTTTTACTAAGTTATTGCTGGTCATCGA
ATATCTTGTCAGATAACCAGGTGTGTTACCAAGAAGGAAATTTATATTTCTCACCGTGTT
TTGTTAAACAAATGTGAATGATTTTTTAAAGGAAAAAAGGCCTATGGTGAGATTTGTGTG
CTATTGTTCATAATTCTAGGAGTTATAAATTGCTTTGAACCTCTGCTTGAGTGTATTTTT
CTACCCAGGTCTATATTTCTGCAATTTTCTTCTTAAAAAAAAAAAAAGACAAAAAAAGTA
ACTATGTCATACACACATTAAAGTGTTCTTGGTTTTATATATCAAAAATAAAAACTTTTT
CTTTTTCTTTGC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-844, gnl|bosTau2|chr24 (1441605-1440768)
               

               
               1-844, gnl|Hg17|chr18 (76016903-76016124)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr24 (1441605-1440768)
               

               
               1-844, gnl|Hg17|chr18 (76016903-76016124)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-844, gnl\|bosTau2\|chr24 (1441605-1440768)
	1-844, gnl\|Hg17\|chr18 (76016903-76016124)

	mgp (0.230681)
	fat (0.147427)
	csk (0.140746)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)
	spc (0.113366)