Ss1.1-Pig4-TMW8043J21.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGGTTTCCAGTTGACATCTTCTATACCAAGGCCCCAGAGGCAGACTACCTGGAGGCC TGCGTGGTGTCGGTGCTACAGATCCATGTGACCCAGCCCCCTGGGGATATCCTGGTGTTC CTGACAGGACAGGAGGAGATCGAGGCTGCCTGCGAGATGCTCCAGGATCGCTGCCGCCGC CTGGGCTCCAAAATCCGGGAGCTCCTGGTGCTGCCCATTTATGCCAACCTGCCTTCCGAC ATGCAGGCTCGGATCTTCCAGCCCACGCCCCCCGGGGCCCGAAAGGTGGTCGTGGCAACG AACATTGCGGAGACCTCGCTCACCATTGAGGGCATCATTTACGTGCTGGATCCAGGGTTC TGTAAGCAGAAGAGCTACAACCCCCGCACGGGCATGGAATCGCTCACCGTCACACCCTGC AGTAAGGCCTCAGCCAATCAGCGAGCTGGTCGGGCAGGGCGGGTGGCTGCAGGGAAGTGC TTCCGCCTGTATACCGCCTGGGCCTACCAGCATGAGCTGGAGGAGACCACGGTGCCTGAG ATCCAGAGGACCAGCCTGGGCAACGTCGTGTTGCTGCTCAAGAGCTTAGGGATCCATGAC CTGATGCATTTTGACTTCCTCGACCCTCCGCCGTATGAGACCCTGCTGTTGGCTTTGGAG CAGCTGTACGCGCTGGGAGCTCTCAACCACCTGGGGGAGCTCACCACGTCTGGTCGAAAG ATGGCAGAGCTGCCCGTGGACCCCATGCTGTCTAAAATGATCCTGGCCTCGGAGAAGTAC AGCTGTTCAGAGGAGATCCTGACAGTGGCTGCCATGCTCTCTGTCAACAACTCCATCTTC TACCGACCCAAGGACAAGGTCGTCCATGCCGACAATGCCCGAGTCAACTTCTTCCTCCCT GGTGGGGACCACCTGGTTCTGCTGAACGTTTATACACAGTGGGCTGAGAGTGGTTACTCT TCCCAGTGGTGCTATGAGAACTTTGTACAGTTCAGGTCCATGCGCCGAGCCCGGGATGTT CGGGAACAGCTGGAGGGGCTCCTGGAACGTGTGGAAGTCGGTCTCAGTTCCTGCCAGGGG GACTATATCCGTGTCCGGAAGGCCATCACTGCCGGTTACTTTTACCACACGGCACGCTTG ACCCGCAGCGGCTACCGCACAGTCAAACAGCAGCAGACAGTGTTCATTCATCCCAACTCT TCCCTCTTTGAGGAACAGCCACGCTGGCTGCTCTACCATGAACTTGTCTTGACCACCAAG GAATTCATGAGACAGGTATTGGAGATTGAGAGCAGTTGGCTTCTGGAGGTGGCTCCTCAC TATTATAAGGCCAAGGAACTGGAAGATCCCCATGCTAAGAAAATGCCCAAGAAAACAGGC AAGACACGAGAAGAGCTAGGGTAATAAAGAGGGAATGTAAAAGAACAAACAGAACCTAAC AGCAGCTCCTTTTCCTTATGTACATTATTTAATATCTACTAATAAAAATATTTTTGGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGGTTTCCAGTTGACATCTTCTATACCAAGGCCCCAGAGGCAGACTACCTGGAGGCC TGCGTGGTGTCGGTGCTACAGATCCATGTGACCCAGCCCCCTGGGGATATCCTGGTGTTC CTGACAGGACAGGAGGAGATCGAGGCTGCCTGCGAGATGCTCCAGGATCGCTGCCGCCGC CTGGGCTCCAAAATCCGGGAGCTCCTGGTGCTGCCCATTTATGCCAACCTGCCTTCCGAC ATGCAGGCTCGGATCTTCCAGCCCACGCCCCCCGGGGCCCGAAAGGTGGTCGTGGCAACG AACATTGCGGAGACCTCGCTCACCATTGAGGGCATCATTTACGTGCTGGATCCAGGGTTC TGTAAGCAGAAGAGCTACAACCCCCGCACGGGCATGGAATCGCTCACCGTCACACCCTGC AGTAAGGCCTCAGCCAATCAGCGAGCTGGTCGGGCAGGGCGGGTGGCTGCAGGGAAGTGC TTCCGCCTGTATACCGCCTGGGCCTACCAGCATGAGCTGGAGGAGACCACGGTGCCTGAG ATCCAGAGGACCAGCCTGGGCAACGTCGTGTTGCTGCTCAAGAGCTTAGGGATCCATGAC CTGATGCATTTTGACTTCCTCGACCCTCCGCCGTATGAGACCCTGCTGTTGGCTTTGGAG CAGCTGTACGCGCTGGGAGCTCTCAACCACCTGGGGGAGCTCACCACGTCTGGTCGAAAG ATGGCAGAGCTGCCCGTGGACCCCATGCTGTCTAAAATGATCCTGGCCTCGGAGAAGTAC AGCTGTTCAGAGGAGATCCTGACAGTGGCTGCCATGCTCTCTGTCAACAACTCCATCTTC TACCGACCCAAGGACAAGGTCGTCCATGCCGACAATGCCCGAGTCAACTTCTTCCTCCCT GGTGGGGACCACCTGGTTCTGCTGAACGTTTATACACAGTGGGCTGAGAGTGGTTACTCT TCCCAGTGGTGCTATGAGAACTTTGTACAGTTCAGGTCCATGCGCCGAGCCCGGGATGTT CGGGAACAGCTGGAGGGGCTCCTGGAACGTGTGGAAGTCGGTCTCAGTTCCTGCCAGGGG GACTATATCCGTGTCCGGAAGGCCATCACTGCCGGTTACTTTTACCACACGGCACGCTTG ACCCGCAGCGGCTACCGCACAGTCAAACAGCAGCAGACAGTGTTCATTCATCCCAACTCT TCCCTCTTTGAGGAACAGCCACGCTGGCTGCTCTACCATGAACTTGTCTTGACCACCAAG GAATTCATGAGACAGGTATTGGAGATTGAGAGCAGTTGGCTTCTGGAGGTGGCTCCTCAC TATTATAAGGCCAAGGAACTGGAAGATCCCCATGCTAAGAAAATGCCCAAGAAAACAGGC AAGACACGAGAAGAGCTAGGGTAATAAAGAGGGAATGTAAAAGAACAAACAGAACCTAAC AGCAGCTCCTTTTCCTTATGTACATTATTTAATATCTACTAATAAAAATATTTTTGGAGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 130-287, gnl|bosTau2|chr23 (20846271-20846428) | |
| 130-287, gnl|canFam2|chr12 (3467046-3467215) | |
| 130-287, gnl|danRer3|chr15 (38547762-38547600) | |
| 130-287, gnl|dasNov1|scaffold_41393 (6743-6892) | |
| 130-287, gnl|echTel1|scaffold_315780 (73003-73166) | |
| 130-287, gnl|fr1|chrUn (175668477-175668317) | |
| 130-287, gnl|galGal2|chr27 (2094555-2094389) | |
| 130-287, gnl|hg17|chr6 (30735224-30735393) | |
| 130-287, gnl|Hg17|chr6 (30735383-30735226) | |
| 130-287, gnl|loxAfr1|scaffold_96146 (441-600) | |
| 130-287, gnl|mm7|chr17 (33990422-33990253) | |
| 130-287, gnl|Mm7|chr17 (33990261-33990418) | |
| 130-287, gnl|monDom2|scaffold_42 (18658398-18658237) | |
| 130-287, gnl|oryCun1|scaffold_204107 (102339-102508) | |
| 130-287, gnl|panTro1|chr5 (31196505-31196674) | |
| 130-287, gnl|rheMac2|chr4 (30240858-30241026) | |
| 130-287, gnl|rn3|chr20 (3016594-3016765) | |
| 130-287, gnl|tetNig1|chrUn_random (31514079-31513913) | |
| 130-287, gnl|xenTro1|scaffold_547 (819936-820093) | |
| 487-690, gnl|bosTau2|chr18 (32086790-32086587) | |
| 487-690, gnl|Hg17|chr16 (70698741-70698944) | |
| 487-690, gnl|Mm7|chr8 (108153684-108153481) | |
| 777-939, gnl|bosTau2|chr23 (20849417-20849579) | |
| 777-939, gnl|Hg17|chr6 (30731353-30731191) | |
| 777-939, gnl|Mm7|chr17 (33993372-33993534) | |
| 1273-1500, gnl|bosTau2|chr23 (20850778-20851000) | |
| 1273-1500, gnl|Hg17|chr6 (30729128-30728912) | |
| 1273-1500, gnl|Mm7|chr17 (33996590-33996800) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-287, gnl|bosTau2|chr23 (20846271-20846428) | |
| 130-287, gnl|canFam2|chr12 (3467046-3467215) | |
| 130-287, gnl|danRer3|chr15 (38547762-38547600) | |
| 130-287, gnl|dasNov1|scaffold_41393 (6743-6892) | |
| 130-287, gnl|echTel1|scaffold_315780 (73003-73166) | |
| 130-287, gnl|fr1|chrUn (175668477-175668317) | |
| 130-287, gnl|galGal2|chr27 (2094555-2094389) | |
| 130-287, gnl|hg17|chr6 (30735224-30735393) | |
| 130-287, gnl|Hg17|chr6 (30735383-30735226) | |
| 130-287, gnl|loxAfr1|scaffold_96146 (441-600) | |
| 130-287, gnl|mm7|chr17 (33990422-33990253) | |
| 130-287, gnl|Mm7|chr17 (33990261-33990418) | |
| 130-287, gnl|monDom2|scaffold_42 (18658398-18658237) | |
| 130-287, gnl|oryCun1|scaffold_204107 (102339-102508) | |
| 130-287, gnl|panTro1|chr5 (31196505-31196674) | |
| 130-287, gnl|rheMac2|chr4 (30240858-30241026) | |
| 130-287, gnl|rn3|chr20 (3016594-3016765) | |
| 130-287, gnl|tetNig1|chrUn_random (31514079-31513913) | |
| 130-287, gnl|xenTro1|scaffold_547 (819936-820093) | |
| 487-690, gnl|bosTau2|chr18 (32086790-32086587) | |
| 487-690, gnl|Hg17|chr16 (70698741-70698944) | |
| 487-690, gnl|Mm7|chr8 (108153684-108153481) | |
| 777-939, gnl|bosTau2|chr23 (20849417-20849579) | |
| 777-939, gnl|Hg17|chr6 (30731353-30731191) | |
| 777-939, gnl|Mm7|chr17 (33993372-33993534) | |
| 1273-1500, gnl|bosTau2|chr23 (20850778-20851000) | |
| 1273-1500, gnl|Hg17|chr6 (30729128-30728912) | |
| 1273-1500, gnl|Mm7|chr17 (33996590-33996800) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.267344) | |
| sto (0.179824) | |
| lnt (0.142308) | |
| sug (0.127291) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| sto (0.179824) | |
| lnt (0.142308) | |
| sug (0.127291) |