Non-Coding RNA Search

Ss1.1-Pig4-TMW8043K03.5

Sequence:


               
               GCATCGCTTCCCCGGAGCGTCTTGCCGGCTGGGCTCGGCTTAGTTGGGGCGTACGGGAGC
TCGGGCTGGGGCACTCTTCCGAATCTCCGGGGTGCAGAGAAACATGGCACTCCCCACACT
GCCTTCCTCCTGGTGCAGCCGAAGGCTCCTGGATCAGCAGGCCGCACGACAGCGACACCG
GGAGCAGGAGGCCCAGCTTCGGCAGCAGTGGGATGAGAACAGCCGCTACTTCAAGATGTC
TGACATCTGCAGCTCCAAACAGGCAGAATGGAGCTCCAGGTCCTCCTACCAGCGGAGCAT
GCATGCCTACCAGCGGGAGAAGATGAAGGAGGAGGGGAGAAAGCGTCTGGAAGCCAGACG
GCAGAGACTCAGACAGCTTCTGCTGGAGGAGCAGGACCTGCTAGTCAGAGAACTAGAGGA
ACTGAGGCTGAGCATGAACTTGAGGGAAAGGAGAATCCGGGAGCGGCATGGGAATCTGAA
GTCGGCCCGAGAAGAGCAAAGGAAACTGATTGCTGAACAACTTCTGTATGAACACTGGAA
AAAGAACAACCCCCAACTTCGAGAGATTGAACTGGACCTTCACAAGAAGCATGTGATAAA
CTCTTGGGAAATGCAGAAAGAGGAAAAAAAACAGCAAGAAGCCGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCGCTTCCCCGGAGCGTCTTGCCGGCTGGGCTCGGCTTAGTTGGGGCGTACGGGAGC
TCGGGCTGGGGCACTCTTCCGAATCTCCGGGGTGCAGAGAAACATGGCACTCCCCACACT
GCCTTCCTCCTGGTGCAGCCGAAGGCTCCTGGATCAGCAGGCCGCACGACAGCGACACCG
GGAGCAGGAGGCCCAGCTTCGGCAGCAGTGGGATGAGAACAGCCGCTACTTCAAGATGTC
TGACATCTGCAGCTCCAAACAGGCAGAATGGAGCTCCAGGTCCTCCTACCAGCGGAGCAT
GCATGCCTACCAGCGGGAGAAGATGAAGGAGGAGGGGAGAAAGCGTCTGGAAGCCAGACG
GCAGAGACTCAGACAGCTTCTGCTGGAGGAGCAGGACCTGCTAGTCAGAGAACTAGAGGA
ACTGAGGCTGAGCATGAACTTGAGGGAAAGGAGAATCCGGGAGCGGCATGGGAATCTGAA
GTCGGCCCGAGAAGAGCAAAGGAAACTGATTGCTGAACAACTTCTGTATGAACACTGGAA
AAAGAACAACCCCCAACTTCGAGAGATTGAACTGGACCTTCACAAGAAGCATGTGATAAA
CTCTTGGGAAATGCAGAAAGAGGAAAAAAAACAGCAAGAAGCCGCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CTP0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTP0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-297, - strand, RNAz p=0.690752

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-297, - strand, RNAz p=0.690752

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               104-297, gnl|bosTau2|chr17 (35929237-35929430)
               

               
               104-297, gnl|Hg17|chr12 (108803552-108803739)
               

               
               104-297, gnl|Mm7|chr5 (113929487-113929671)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-297, gnl|bosTau2|chr17 (35929237-35929430)
               

               
               104-297, gnl|Hg17|chr12 (108803552-108803739)
               

               
               104-297, gnl|Mm7|chr5 (113929487-113929671)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	104-297, gnl\|bosTau2\|chr17 (35929237-35929430)
	104-297, gnl\|Hg17\|chr12 (108803552-108803739)
	104-297, gnl\|Mm7\|chr5 (113929487-113929671)