Ss1.1-Pig4-TMW8043K08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCCTCCCTCCCTCTCCCTCTCTCTCTTTCCCCTCCCTTTACCTTCTCCCTCTTCTCTC TCCCAGCTTCCTAACATTAAAGAGAAAATGCTGCTATCAGTGACTTCGAGGCCTGGGATT TCGACTTTTGGCTATAACAAGAACAACAAGAAGCCATATGTGTCATTGTCTCAGCAGATG GCACCACCTAGTCCAAGCAACAGCACCCCTAACAGCAGCAATGGGAGCAATGTAAATGAC CAGCTGAGTAAAACCAACCTCTACATCCGGGGATTGCAGCCAGGCACTACTGACCAGGAC CTAGTCAAGTTGTGTCAGTCATATGGCAAGATTGTCTCCACTAAGGCCATATTGGACAAG ACCACAAACAAATGCAAAGGCTATGGCTTTGTGGACTTTGACAGTCCTTCAGCAGCACAG AAAGCTGTAACAGCACTGAAAGCCAGTGGTGTGCAAGCACAGATGGCAAAGCAACAAGAG CAGGACCCCACAAATCTATACATATCAAACCTCCCACTGTCAATGGATGAGCAAGAACTG GAGGGAATGCTGAAGCCTTTTGGCCAGGTTATCTCCACTCGAATCCTTCGAGACACCAGT GGGACCAGCAGAGGGGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTGAAGCCATC ATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAGCCCCATCTGAT CCCTTGCTTTGCAAATTTGCTGATGGGGGTCCAAAGAAACGACAGAACCAAGGAAAATTT GTGCAAAATGGACGGGCCTGGCCAAGGAATGGAGACATGGGTGGTTTGGCCCTGACCTAT GATCCTACCACAGCTCTTCAGAATGGGTTTTACCCAGCTCCTTATAACATCACCCCCAAC AGGATGCTTTCTCAATCTGCACTCTCACCGTACCTTCCGTCTCCTGTGTCTTCCTATCAG AGAGTAACTCAGACATCTCCTCTTCAAGTACCTAACCCGTCTTGGATGCACCACCAGTCA TACCTCATGCAACCTTCAGGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTC CAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGCCATCTCTCCCTCAGCAGC ATGGGCACGTACATGCCAGCAGCTGCAGCTGTGCAAGGAGCTTATATCTCTCAGTTCACC CCTGTGCCTTCTTCCAGTGTTTCACTTGAGGAGAGCGGCGGCCAGCAAAGTCAAGTGACA GCGGAAGCTCCCTCAGACCATGGCGTCTATTCTTTCCAGTTCAACAAGTAACAGTGGATT TCCCTCCCCATCTTTGTTGAATGCAAATGAATTCTTGGAGAGGCTGATGCTCCGGACTCC AGAGGGCTGCCCAGGAATAGAGCCCCTCTGTGGGCCCTGCTGAGGACTAACACTTGGCCA GCGGTGTTCACAGGCCGGGGCCTGGAAAAAGAAATCTCTGCTCTCCTGCCCTCTGTTCTT CCTCTGCTCCTGGTGGAGCCTGGGGCAGCTGTCACTTTTGTGTGTCTTATAGTCAAGGAG ATCAAAAGAACTTTTTTCTTTTGTGAAGAAAGTTTTATGTTTTGTTTTTAACTGCAATAT ACTCTTTCCGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCCTCCCTCCCTCTCCCTCTCTCTCTTTCCCCTCCCTTTACCTTCTCCCTCTTCTCTC TCCCAGCTTCCTAACATTAAAGAGAAAATGCTGCTATCAGTGACTTCGAGGCCTGGGATT TCGACTTTTGGCTATAACAAGAACAACAAGAAGCCATATGTGTCATTGTCTCAGCAGATG GCACCACCTAGTCCAAGCAACAGCACCCCTAACAGCAGCAATGGGAGCAATGTAAATGAC CAGCTGAGTAAAACCAACCTCTACATCCGGGGATTGCAGCCAGGCACTACTGACCAGGAC CTAGTCAAGTTGTGTCAGTCATATGGCAAGATTGTCTCCACTAAGGCCATATTGGACAAG ACCACAAACAAATGCAAAGGCTATGGCTTTGTGGACTTTGACAGTCCTTCAGCAGCACAG AAAGCTGTAACAGCACTGAAAGCCAGTGGTGTGCAAGCACAGATGGCAAAGCAACAAGAG CAGGACCCCACAAATCTATACATATCAAACCTCCCACTGTCAATGGATGAGCAAGAACTG GAGGGAATGCTGAAGCCTTTTGGCCAGGTTATCTCCACTCGAATCCTTCGAGACACCAGT GGGACCAGCAGAGGGGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTGAAGCCATC ATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAGCCCCATCTGAT CCCTTGCTTTGCAAATTTGCTGATGGGGGTCCAAAGAAACGACAGAACCAAGGAAAATTT GTGCAAAATGGACGGGCCTGGCCAAGGAATGGAGACATGGGTGGTTTGGCCCTGACCTAT GATCCTACCACAGCTCTTCAGAATGGGTTTTACCCAGCTCCTTATAACATCACCCCCAAC AGGATGCTTTCTCAATCTGCACTCTCACCGTACCTTCCGTCTCCTGTGTCTTCCTATCAG AGAGTAACTCAGACATCTCCTCTTCAAGTACCTAACCCGTCTTGGATGCACCACCAGTCA TACCTCATGCAACCTTCAGGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTC CAGCCTGCCTCCATGATGGGACCTCTTACCCAGCAACTGGGCCATCTCTCCCTCAGCAGC ATGGGCACGTACATGCCAGCAGCTGCAGCTGTGCAAGGAGCTTATATCTCTCAGTTCACC CCTGTGCCTTCTTCCAGTGTTTCACTTGAGGAGAGCGGCGGCCAGCAAAGTCAAGTGACA GCGGAAGCTCCCTCAGACCATGGCGTCTATTCTTTCCAGTTCAACAAGTAACAGTGGATT TCCCTCCCCATCTTTGTTGAATGCAAATGAATTCTTGGAGAGGCTGATGCTCCGGACTCC AGAGGGCTGCCCAGGAATAGAGCCCCTCTGTGGGCCCTGCTGAGGACTAACACTTGGCCA GCGGTGTTCACAGGCCGGGGCCTGGAAAAAGAAATCTCTGCTCTCCTGCCCTCTGTTCTT CCTCTGCTCCTGGTGGAGCCTGGGGCAGCTGTCACTTTTGTGTGTCTTATAGTCAAGGAG ATCAAAAGAACTTTTTTCTTTTGTGAAGAAAGTTTTATGTTTTGTTTTTAACTGCAATAT ACTCTTTCCGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1039-1149, + strand, RNAz p=0.769361 | |
| 1355-1472, + strand, RNAz p=0.643463 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1039-1149, + strand, RNAz p=0.769361 | |
| 1355-1472, + strand, RNAz p=0.643463 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002898, + |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 152-323, gnl|bosTau2|chr5 (33168327-33168156) | |
| 152-323, gnl|Hg17|chr12 (55242466-55242637) | |
| 152-323, gnl|Mm7|chr10 (127652854-127652677) | |
| 470-630, gnl|bosTau2|chr22 (1628063-1627903) | |
| 470-630, gnl|canFam2|chr23 (17749999-17749812) | |
| 470-630, gnl|danRer3|chr21 (18466820-18466638) | |
| 470-630, gnl|dasNov1|scaffold_17116 (7809-7994) | |
| 470-630, gnl|echTel1|scaffold_289762 (1736-1549) | |
| 470-630, gnl|fr1|chrUn (229151962-229152149) | |
| 470-630, gnl|galGal2|chr2 (38573128-38573312) | |
| 470-630, gnl|hg17|chr3 (29756189-29756376) | |
| 470-630, gnl|Hg17|chr3 (29756213-29756373) | |
| 470-630, gnl|loxAfr1|scaffold_156711 (4276-4458) | |
| 470-630, gnl|mm7|chr9 (116495252-116495064) | |
| 470-630, gnl|Mm7|chr9 (116495225-116495065) | |
| 470-630, gnl|monDom2|scaffold_7 (85715014-85715204) | |
| 470-630, gnl|oryCun1|scaffold_209806 (112588-112401) | |
| 470-630, gnl|panTro1|chr2 (30692801-30692988) | |
| 470-630, gnl|rheMac2|chr2 (172176781-172176968) | |
| 470-630, gnl|rn3|chr8 (121379086-121378898) | |
| 470-630, gnl|tetNig1|chr21_random (2775223-2775413) | |
| 470-630, gnl|xenTro1|scaffold_586 (15394-15581) | |
| 707-820, gnl|bosTau2|chr5 (33154998-33154885) | |
| 707-820, gnl|canFam2|chr10 (3801998-3802125) | |
| 707-820, gnl|danRer3|chrNA (143304610-143304722) | |
| 707-820, gnl|dasNov1|scaffold_75131 (6910-6802) | |
| 707-820, gnl|echTel1|scaffold_320897 (13503-13629) | |
| 707-820, gnl|fr1|chrUn (41156998-41157116) | |
| 707-820, gnl|hg17|chr12 (55261448-55261575) | |
| 707-820, gnl|Hg17|chr12 (55261447-55261560) | |
| 707-820, gnl|loxAfr1|scaffold_14918 (3519-3646) | |
| 707-820, gnl|mm7|chr10 (127639530-127639403) | |
| 707-820, gnl|Mm7|chr10 (127639529-127639416) | |
| 707-820, gnl|oryCun1|scaffold_202872 (58674-58559) | |
| 707-820, gnl|panTro1|chr10_random (22371497-22371624) | |
| 707-820, gnl|rheMac2|chr11 (53664704-53664831) | |
| 707-820, gnl|rn3|chr7 (1430905-1430778) | |
| 707-820, gnl|tetNig1|chr11 (6727220-6727102) | |
| 707-820, gnl|xenTro1|scaffold_85 (1118860-1118744) | |
| 1039-1149, gnl|bosTau2|chr5 (33148974-33148864) | |
| 1039-1149, gnl|canFam2|chr10 (3810084-3810249) | |
| 1039-1149, gnl|danRer3|chrNA (143309825-143309962) | |
| 1039-1149, gnl|dasNov1|scaffold_4517 (71087-70918) | |
| 1039-1149, gnl|echTel1|scaffold_320897 (19474-19642) | |
| 1039-1149, gnl|fr1|chrUn (41157759-41157923) | |
| 1039-1149, gnl|hg17|chr12 (55267578-55267747) | |
| 1039-1149, gnl|Hg17|chr12 (55267605-55267715) | |
| 1039-1149, gnl|loxAfr1|scaffold_14918 (9381-9549) | |
| 1039-1149, gnl|mm7|chr10 (127636633-127636469) | |
| 1039-1149, gnl|Mm7|chr10 (127636604-127636494) | |
| 1039-1149, gnl|oryCun1|scaffold_131108 (6487-6662) | |
| 1039-1149, gnl|panTro1|chr10_random (22377956-22378125) | |
| 1039-1149, gnl|rheMac2|chr11 (53671062-53671231) | |
| 1039-1149, gnl|rn3|chr7 (1428267-1428102) | |
| 1039-1149, gnl|tetNig1|chr11 (6726262-6726115) | |
| 1316-1626, gnl|bosTau2|chr5 (33147578-33147262) | |
| 1316-1626, gnl|Hg17|chr12 (55269190-55269490) | |
| 1316-1626, gnl|Mm7|chr10 (127634997-127634687) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-323, gnl|bosTau2|chr5 (33168327-33168156) | |
| 152-323, gnl|Hg17|chr12 (55242466-55242637) | |
| 152-323, gnl|Mm7|chr10 (127652854-127652677) | |
| 470-630, gnl|bosTau2|chr22 (1628063-1627903) | |
| 470-630, gnl|canFam2|chr23 (17749999-17749812) | |
| 470-630, gnl|danRer3|chr21 (18466820-18466638) | |
| 470-630, gnl|dasNov1|scaffold_17116 (7809-7994) | |
| 470-630, gnl|echTel1|scaffold_289762 (1736-1549) | |
| 470-630, gnl|fr1|chrUn (229151962-229152149) | |
| 470-630, gnl|galGal2|chr2 (38573128-38573312) | |
| 470-630, gnl|hg17|chr3 (29756189-29756376) | |
| 470-630, gnl|Hg17|chr3 (29756213-29756373) | |
| 470-630, gnl|loxAfr1|scaffold_156711 (4276-4458) | |
| 470-630, gnl|mm7|chr9 (116495252-116495064) | |
| 470-630, gnl|Mm7|chr9 (116495225-116495065) | |
| 470-630, gnl|monDom2|scaffold_7 (85715014-85715204) | |
| 470-630, gnl|oryCun1|scaffold_209806 (112588-112401) | |
| 470-630, gnl|panTro1|chr2 (30692801-30692988) | |
| 470-630, gnl|rheMac2|chr2 (172176781-172176968) | |
| 470-630, gnl|rn3|chr8 (121379086-121378898) | |
| 470-630, gnl|tetNig1|chr21_random (2775223-2775413) | |
| 470-630, gnl|xenTro1|scaffold_586 (15394-15581) | |
| 707-820, gnl|bosTau2|chr5 (33154998-33154885) | |
| 707-820, gnl|canFam2|chr10 (3801998-3802125) | |
| 707-820, gnl|danRer3|chrNA (143304610-143304722) | |
| 707-820, gnl|dasNov1|scaffold_75131 (6910-6802) | |
| 707-820, gnl|echTel1|scaffold_320897 (13503-13629) | |
| 707-820, gnl|fr1|chrUn (41156998-41157116) | |
| 707-820, gnl|hg17|chr12 (55261448-55261575) | |
| 707-820, gnl|Hg17|chr12 (55261447-55261560) | |
| 707-820, gnl|loxAfr1|scaffold_14918 (3519-3646) | |
| 707-820, gnl|mm7|chr10 (127639530-127639403) | |
| 707-820, gnl|Mm7|chr10 (127639529-127639416) | |
| 707-820, gnl|oryCun1|scaffold_202872 (58674-58559) | |
| 707-820, gnl|panTro1|chr10_random (22371497-22371624) | |
| 707-820, gnl|rheMac2|chr11 (53664704-53664831) | |
| 707-820, gnl|rn3|chr7 (1430905-1430778) | |
| 707-820, gnl|tetNig1|chr11 (6727220-6727102) | |
| 707-820, gnl|xenTro1|scaffold_85 (1118860-1118744) | |
| 1039-1149, gnl|bosTau2|chr5 (33148974-33148864) | |
| 1039-1149, gnl|canFam2|chr10 (3810084-3810249) | |
| 1039-1149, gnl|danRer3|chrNA (143309825-143309962) | |
| 1039-1149, gnl|dasNov1|scaffold_4517 (71087-70918) | |
| 1039-1149, gnl|echTel1|scaffold_320897 (19474-19642) | |
| 1039-1149, gnl|fr1|chrUn (41157759-41157923) | |
| 1039-1149, gnl|hg17|chr12 (55267578-55267747) | |
| 1039-1149, gnl|Hg17|chr12 (55267605-55267715) | |
| 1039-1149, gnl|loxAfr1|scaffold_14918 (9381-9549) | |
| 1039-1149, gnl|mm7|chr10 (127636633-127636469) | |
| 1039-1149, gnl|Mm7|chr10 (127636604-127636494) | |
| 1039-1149, gnl|oryCun1|scaffold_131108 (6487-6662) | |
| 1039-1149, gnl|panTro1|chr10_random (22377956-22378125) | |
| 1039-1149, gnl|rheMac2|chr11 (53671062-53671231) | |
| 1039-1149, gnl|rn3|chr7 (1428267-1428102) | |
| 1039-1149, gnl|tetNig1|chr11 (6726262-6726115) | |
| 1316-1626, gnl|bosTau2|chr5 (33147578-33147262) | |
| 1316-1626, gnl|Hg17|chr12 (55269190-55269490) | |
| 1316-1626, gnl|Mm7|chr10 (127634997-127634687) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pla (0.401016) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| jca (0.11396) |