Ss1.1-Pig4-TMW8043K09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTGAAAATTAATAAAGTGGATATGCAGTGGGTACCAGGTTTTGGCAGAAGGCTGGGCA ACCCCGCTGAATGGCTTTATGAGAGAGAGGGAGTACTTGCAGTGTCTTCATTTTGATTGT CTTCTGGATGGGGGTGTTATCAACTTGTCGGTACCTATAGTTCTGACAGCTACTCAGGAA GATAAAGAGAGACTGGACGGCTGTACAGCATTTGCTCTGATGTACGAGGGCCGCCGCGTG GCTATTCTTCGCAATCCCGAGTTTTTTGAGCACAGGAAGGAGGAGCGCTGTGCCAGACAG TGGGGAACAACGTGCAAGAACCACCCCTACATCAAGATGGTTATGGAACAAGGAGATTGG CTGGTTGGAGGAGATCTTCAAGTCTTGGACCGAATTTATTGGAATGATGGTCTTGATCAA TATCGTTTTACTCCTACCGAGCTGAAGCAGAAATTTAAAGATATGAATGCTGATGCTGTC TTTGCGTTTCAGTTACGCAACCCAGTGCACAACGGCCATGCTCTGTTAATGCAGGACACC CATAAGCAGCTTCTAGATAGGGGCTATCGGCGCCCTGTCCTCCTTCTTCACCCTCTTGGT GGCTGGACAAAGGATGATGATGTTCCTTTGATGTGGCGGATGAAGCAGCACGCTGCAGTG CTGGAGGAAGGAGTCCTGAATCCTGAAACAACGGTGGTAGCCATCTTCCCGTCTCCCATG ATGTATGCTGGACCAACTGAGGTCCAGTGGCATTGCAGAGCACGGATGGTTGCAGGAGCC AATTTTTATATTGTTGGGCGAGACCCGGCTGGCATGCCTCATCCAGAAACAGGGAAGGAT CTTTATGAGCCAACTCATGGCGCCAAAGTGCTGACCATGGCCCCCGGCCTAATCACCTTG GAAATAGTTCCCTTTCGAGTGGCAGCTTATAACAAGAAAAAGAAGCGGATGGACTACTAT GACTCTGAGCACCATGAAGACTTTGAATTTATTTCGGGAACACGAATGCGCAAACTTGCC CGAGAAGGCCAGAAGCCTCCTGAAGGCTTCATGGCTCCCAAGGCGTGGACCGTGCTGATG GAATACTACAAATCCTTGGAGAAGGCCTAAACTCTGAAGCCAGTCATCTCACCTTTGACA CCTCACTGAGTAACAAGAGGGGACCACGTAGTTATTGTTGGCTTTTCTTTGTGGTATCTG TCCAGATGTGCTTCCTAAAAGCAGACCCTTTCCTATAACTAGCATCAGTTTTGGTCGGCC TTATGAGTTCTGTTCTGAACTAATGTAACACACTCCTGGTTGTAACGTATCTTTTCCACT GACTATAATATTCCTACAATTCAGTTTTAAAACTTTGTCTTTTTGTTTTATATTTATGCT TCTGTCTCATGATTTTTTTTTCAAGCTGATATATATTAGTTATAACCAATAGTATTCATA TGGCATCTTACTTTTCATCTCTTAAGAAAAGAAAAAAAAAAAAATCTCCTAAACAATAAA CATGGTTAGACCTTGTTTTGGGAATTTTACAAGACATCTGTAGGAATTAGATTTTCTTTT CTCTCCATTGAAAATATAAATTGCTTTCTTCCAATCAGCTATTGAGCGCTCAGCTGTTAT AATCTAAAATATATTAATATCTGTGTAAGCCCTAAATGAACTTTCTTTATTCAATAAAAG TAAACTTTGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTGAAAATTAATAAAGTGGATATGCAGTGGGTACCAGGTTTTGGCAGAAGGCTGGGCA ACCCCGCTGAATGGCTTTATGAGAGAGAGGGAGTACTTGCAGTGTCTTCATTTTGATTGT CTTCTGGATGGGGGTGTTATCAACTTGTCGGTACCTATAGTTCTGACAGCTACTCAGGAA GATAAAGAGAGACTGGACGGCTGTACAGCATTTGCTCTGATGTACGAGGGCCGCCGCGTG GCTATTCTTCGCAATCCCGAGTTTTTTGAGCACAGGAAGGAGGAGCGCTGTGCCAGACAG TGGGGAACAACGTGCAAGAACCACCCCTACATCAAGATGGTTATGGAACAAGGAGATTGG CTGGTTGGAGGAGATCTTCAAGTCTTGGACCGAATTTATTGGAATGATGGTCTTGATCAA TATCGTTTTACTCCTACCGAGCTGAAGCAGAAATTTAAAGATATGAATGCTGATGCTGTC TTTGCGTTTCAGTTACGCAACCCAGTGCACAACGGCCATGCTCTGTTAATGCAGGACACC CATAAGCAGCTTCTAGATAGGGGCTATCGGCGCCCTGTCCTCCTTCTTCACCCTCTTGGT GGCTGGACAAAGGATGATGATGTTCCTTTGATGTGGCGGATGAAGCAGCACGCTGCAGTG CTGGAGGAAGGAGTCCTGAATCCTGAAACAACGGTGGTAGCCATCTTCCCGTCTCCCATG ATGTATGCTGGACCAACTGAGGTCCAGTGGCATTGCAGAGCACGGATGGTTGCAGGAGCC AATTTTTATATTGTTGGGCGAGACCCGGCTGGCATGCCTCATCCAGAAACAGGGAAGGAT CTTTATGAGCCAACTCATGGCGCCAAAGTGCTGACCATGGCCCCCGGCCTAATCACCTTG GAAATAGTTCCCTTTCGAGTGGCAGCTTATAACAAGAAAAAGAAGCGGATGGACTACTAT GACTCTGAGCACCATGAAGACTTTGAATTTATTTCGGGAACACGAATGCGCAAACTTGCC CGAGAAGGCCAGAAGCCTCCTGAAGGCTTCATGGCTCCCAAGGCGTGGACCGTGCTGATG GAATACTACAAATCCTTGGAGAAGGCCTAAACTCTGAAGCCAGTCATCTCACCTTTGACA CCTCACTGAGTAACAAGAGGGGACCACGTAGTTATTGTTGGCTTTTCTTTGTGGTATCTG TCCAGATGTGCTTCCTAAAAGCAGACCCTTTCCTATAACTAGCATCAGTTTTGGTCGGCC TTATGAGTTCTGTTCTGAACTAATGTAACACACTCCTGGTTGTAACGTATCTTTTCCACT GACTATAATATTCCTACAATTCAGTTTTAAAACTTTGTCTTTTTGTTTTATATTTATGCT TCTGTCTCATGATTTTTTTTTCAAGCTGATATATATTAGTTATAACCAATAGTATTCATA TGGCATCTTACTTTTCATCTCTTAAGAAAAGAAAAAAAAAAAAATCTCCTAAACAATAAA CATGGTTAGACCTTGTTTTGGGAATTTTACAAGACATCTGTAGGAATTAGATTTTCTTTT CTCTCCATTGAAAATATAAATTGCTTTCTTCCAATCAGCTATTGAGCGCTCAGCTGTTAT AATCTAAAATATATTAATATCTGTGTAAGCCCTAAATGAACTTTCTTTATTCAATAAAAG TAAACTTTGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 551-670, + strand, RNAz p=0.681345 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 551-670, + strand, RNAz p=0.681345 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 117-336, gnl|bosTau2|chr6 (6699941-6699723) | |
| 117-336, gnl|canFam2|chr32 (31104809-31105008) | |
| 117-336, gnl|danRer3|chr1 (49669769-49669595) | |
| 117-336, gnl|dasNov1|scaffold_231698 (1879-1685) | |
| 117-336, gnl|echTel1|scaffold_258102 (10344-10145) | |
| 117-336, gnl|fr1|chrUn (70996049-70996251) | |
| 117-336, gnl|galGal2|chr4 (38669956-38669782) | |
| 117-336, gnl|hg17|chr4 (108933429-108933628) | |
| 117-336, gnl|Hg17|chr4 (108933673-108933455) | |
| 117-336, gnl|loxAfr1|scaffold_40820 (11270-11461) | |
| 117-336, gnl|mm7|chr3 (131402987-131402808) | |
| 117-336, gnl|Mm7|chr3 (131402762-131402979) | |
| 117-336, gnl|monDom2|scaffold_37 (2378476-2378278) | |
| 117-336, gnl|oryCun1|scaffold_206852 (42175-41976) | |
| 117-336, gnl|panTro1|chr3 (125420636-125420835) | |
| 117-336, gnl|rheMac2|chr5 (100595284-100595482) | |
| 117-336, gnl|rn3|chr2 (228997251-228997072) | |
| 117-336, gnl|tetNig1|chr18 (6049319-6049494) | |
| 117-336, gnl|xenTro1|scaffold_173 (186764-186575) | |
| 472-743, gnl|bosTau2|chr6 (6686916-6686645) | |
| 472-743, gnl|canFam2|chr32 (31088525-31088810) | |
| 472-743, gnl|danRer3|chr1 (49683171-49682888) | |
| 472-743, gnl|dasNov1|scaffold_6218 (36302-36586) | |
| 472-743, gnl|echTel1|scaffold_291055 (4405-4690) | |
| 472-743, gnl|fr1|chrUn (70994140-70994426) | |
| 472-743, gnl|galGal2|chr4 (38673781-38673483) | |
| 472-743, gnl|hg17|chr4 (108923559-108923844) | |
| 472-743, gnl|Hg17|chr4 (108923831-108923560) | |
| 472-743, gnl|loxAfr1|scaffold_16430 (34685-34970) | |
| 472-743, gnl|mm7|chr3 (131416223-131415938) | |
| 472-743, gnl|Mm7|chr3 (131415949-131416220) | |
| 472-743, gnl|monDom2|scaffold_37 (2392310-2392025) | |
| 472-743, gnl|oryCun1|scaffold_206852 (50281-49996) | |
| 472-743, gnl|panTro1|chr3 (125410766-125411051) | |
| 472-743, gnl|rheMac2|chr5 (100585385-100585670) | |
| 472-743, gnl|rn3|chr2 (229009886-229009601) | |
| 472-743, gnl|tetNig1|chr18 (6048209-6048489) | |
| 472-743, gnl|xenTro1|scaffold_173 (189744-189454) | |
| 972-1688, gnl|bosTau2|chr6 (6647402-6646693) | |
| 972-1688, gnl|Hg17|chr4 (108893147-108892437) | |
| 972-1688, gnl|Mm7|chr3 (131439893-131440592) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-336, gnl|bosTau2|chr6 (6699941-6699723) | |
| 117-336, gnl|canFam2|chr32 (31104809-31105008) | |
| 117-336, gnl|danRer3|chr1 (49669769-49669595) | |
| 117-336, gnl|dasNov1|scaffold_231698 (1879-1685) | |
| 117-336, gnl|echTel1|scaffold_258102 (10344-10145) | |
| 117-336, gnl|fr1|chrUn (70996049-70996251) | |
| 117-336, gnl|galGal2|chr4 (38669956-38669782) | |
| 117-336, gnl|hg17|chr4 (108933429-108933628) | |
| 117-336, gnl|Hg17|chr4 (108933673-108933455) | |
| 117-336, gnl|loxAfr1|scaffold_40820 (11270-11461) | |
| 117-336, gnl|mm7|chr3 (131402987-131402808) | |
| 117-336, gnl|Mm7|chr3 (131402762-131402979) | |
| 117-336, gnl|monDom2|scaffold_37 (2378476-2378278) | |
| 117-336, gnl|oryCun1|scaffold_206852 (42175-41976) | |
| 117-336, gnl|panTro1|chr3 (125420636-125420835) | |
| 117-336, gnl|rheMac2|chr5 (100595284-100595482) | |
| 117-336, gnl|rn3|chr2 (228997251-228997072) | |
| 117-336, gnl|tetNig1|chr18 (6049319-6049494) | |
| 117-336, gnl|xenTro1|scaffold_173 (186764-186575) | |
| 472-743, gnl|bosTau2|chr6 (6686916-6686645) | |
| 472-743, gnl|canFam2|chr32 (31088525-31088810) | |
| 472-743, gnl|danRer3|chr1 (49683171-49682888) | |
| 472-743, gnl|dasNov1|scaffold_6218 (36302-36586) | |
| 472-743, gnl|echTel1|scaffold_291055 (4405-4690) | |
| 472-743, gnl|fr1|chrUn (70994140-70994426) | |
| 472-743, gnl|galGal2|chr4 (38673781-38673483) | |
| 472-743, gnl|hg17|chr4 (108923559-108923844) | |
| 472-743, gnl|Hg17|chr4 (108923831-108923560) | |
| 472-743, gnl|loxAfr1|scaffold_16430 (34685-34970) | |
| 472-743, gnl|mm7|chr3 (131416223-131415938) | |
| 472-743, gnl|Mm7|chr3 (131415949-131416220) | |
| 472-743, gnl|monDom2|scaffold_37 (2392310-2392025) | |
| 472-743, gnl|oryCun1|scaffold_206852 (50281-49996) | |
| 472-743, gnl|panTro1|chr3 (125410766-125411051) | |
| 472-743, gnl|rheMac2|chr5 (100585385-100585670) | |
| 472-743, gnl|rn3|chr2 (229009886-229009601) | |
| 472-743, gnl|tetNig1|chr18 (6048209-6048489) | |
| 472-743, gnl|xenTro1|scaffold_173 (189744-189454) | |
| 972-1688, gnl|bosTau2|chr6 (6647402-6646693) | |
| 972-1688, gnl|Hg17|chr4 (108893147-108892437) | |
| 972-1688, gnl|Mm7|chr3 (131439893-131440592) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| mgp (0.922722) | |
| lyg (0.665513) | |
| fco (0.628832) | |
| spc (0.453463) | |
| elu (0.385356) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbr (0.255951) | |
| ese (0.253004) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.922722) | |
| lyg (0.665513) | |
| fco (0.628832) | |
| spc (0.453463) | |
| elu (0.385356) | |
| sug (0.381874) | |
| cmu (0.372787) | |
| ebs (0.354904) | |
| fbs (0.350693) | |
| ova (0.258264) | |
| ret (0.257467) | |
| cbr (0.255951) | |
| ese (0.253004) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) |